mRNA_Ecto-sp13_S_contig13972.3096.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13972.3096.1
Unique NamemRNA_Ecto-sp13_S_contig13972.3096.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13972.3096.1 vs. uniprot
Match: D7FJV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV9_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 5.700e-43
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 3 
Query:    3 IQELLEMSLEALDHAHTAHVPSILMLQWLLGRAPHLRSLLLQGGVVRRAFHRLERAEAKGFGPGERAMQYATLFLVTGLMFE 248
            IQELLEMSLEALDHAHTAHVPSILMLQWLLGRAPHLRSLLLQGGVV RAF RLERAEAKGFGPGERAMQYATLFL TGLMFE
Sbjct:  366 IQELLEMSLEALDHAHTAHVPSILMLQWLLGRAPHLRSLLLQGGVVSRAFRRLERAEAKGFGPGERAMQYATLFLATGLMFE 447
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13972.3096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJV9_ECTSI5.700e-4396.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13972contigEcto-sp13_S_contig13972:927..1337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size411
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.627213-UTR-Ecto-sp13_S_contig13972:926..9461681462745.627213-UTR-Ecto-sp13_S_contig13972:926..946Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13972 927..946 +
1681462745.6517725-UTR-Ecto-sp13_S_contig13972:1177..13371681462745.6517725-UTR-Ecto-sp13_S_contig13972:1177..1337Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13972 1178..1337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.6414511-CDS-Ecto-sp13_S_contig13972:946..11771681462745.6414511-CDS-Ecto-sp13_S_contig13972:946..1177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13972 947..1177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13972.3096.1prot_Ecto-sp13_S_contig13972.3096.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13972 947..1177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13972.3096.1

>prot_Ecto-sp13_S_contig13972.3096.1 ID=prot_Ecto-sp13_S_contig13972.3096.1|Name=mRNA_Ecto-sp13_S_contig13972.3096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MSLEALDHAHTAHVPSILMLQWLLGRAPHLRSLLLQGGVVRRAFHRLERA
EAKGFGPGERAMQYATLFLVTGLMFE*
back to top

mRNA from alignment at Ecto-sp13_S_contig13972:927..1337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13972.3096.1 ID=mRNA_Ecto-sp13_S_contig13972.3096.1|Name=mRNA_Ecto-sp13_S_contig13972.3096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13972:927..1337+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGATTCAAGAGCTGCTGGAGATGAGCTTGGAGGCGCTGGACCACGCGCAC
ACCGCCCACGTTCCCTCGATTCTCATGCTGCAGTGGCTGCTGGGCAGGGC
TCCGCACCTCCGGTCTCTACTGCTTCAAGGAGGCGTGGTCCGCCGAGCGT
TTCATCGGCTGGAGAGGGCCGAGGCCAAGGGGTTCGGGCCAGGGGAGCGA
GCGATGCAGTACGCCACGCTGTTTCTCGTCACAGGGCTAATGTTTGAGTG
AATGAGAGCCGCGCTGGAAGCCACCACATTGTTTGCGCCCGCCCGCGGTT
GGCCTTGTGACCGTGGAGCTGCGATTTTGGTCGGATGAGGCTGACCCAAG
ACGCTTTTTTGGCTGTGTTGAAAGAAAAAATGGGTCGTTCCCTTGTATCG
CGCACGCCGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13972:927..1337+

>mRNA_Ecto-sp13_S_contig13972.3096.1 ID=mRNA_Ecto-sp13_S_contig13972.3096.1|Name=mRNA_Ecto-sp13_S_contig13972.3096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13972:927..1337+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTTGGAGGCGCTGGACCACGCGCACACCGCCCACGTTCCCTCGAT
TCTCATGCTGCAGTGGCTGCTGGGCAGGGCTCCGCACCTCCGGTCTCTAC
TGCTTCAAGGAGGCGTGGTCCGCCGAGCGTTTCATCGGCTGGAGAGGGCC
GAGGCCAAGGGGTTCGGGCCAGGGGAGCGAGCGATGCAGTACGCCACGCT
GTTTCTCGTCACAGGGCTAATGTTTGAGTGA
back to top