mRNA_Ecto-sp13_S_contig1397.3095.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1397.3095.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI) HSP 1 Score: 287 bits (734), Expect = 9.780e-98 Identity = 149/154 (96.75%), Postives = 149/154 (96.75%), Query Frame = 1
Query: 1 MSSTFSDETWRYFREKYVSLLGDGSVVSAGLDNKSKSYRIHLVADLPEGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVERLRDSRHHIEAEAEAEVAAARTKRPRACHASAAEHARPEKRGGKREGAGRPRGSFGPKKLRQR 462
MSSTFSDETWRYFREK VSLLGDGSVVSAGLDNKSKSYRIHLVADL EGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDW PSEGGNVVERLRDSRH IEAEAEAEVAAARTKRPR CHASAAEHARPEKRGGKREGAGRPRGSFGPKKLRQR
Sbjct: 1 MSSTFSDETWRYFREKCVSLLGDGSVVSAGLDNKSKSYRIHLVADLREGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWRPSEGGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAEHARPEKRGGKREGAGRPRGSFGPKKLRQR 154
BLAST of mRNA_Ecto-sp13_S_contig1397.3095.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 8.300e-14 Identity = 61/134 (45.52%), Postives = 76/134 (56.72%), Query Frame = 1
Query: 70 GSVVSAGLDNKSKSYRIHLVADLPEGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPS-EGGNVVERLRDSRHHIEAEA-EAEVAAARTKRPRAC-HASAA-EHARPEKRGGKREGAGRPRGSFGPKKLRQ 459
G +VS + K YR+ L A + G + W S IK PKGR TGRD AE +F W PS GNV H +A A EAE A R KRPR C HA+A+ E A K GG R G+GRP+GS+G K++R+
Sbjct: 30 GELVSVRQEKSPKKYRVELTAHV-HGSEQRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGNVP--------HTDASAGEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVRE 154
BLAST of mRNA_Ecto-sp13_S_contig1397.3095.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 8.810e-14 Identity = 61/134 (45.52%), Postives = 76/134 (56.72%), Query Frame = 1
Query: 70 GSVVSAGLDNKSKSYRIHLVADLPEGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPS-EGGNVVERLRDSRHHIEAEA-EAEVAAARTKRPRAC-HASAA-EHARPEKRGGKREGAGRPRGSFGPKKLRQ 459
G +VS + K YR+ L A + G + W S IK PKGR TGRD AE +F W PS GNV H +A A EAE A R KRPR C HA+A+ E A K GG R G+GRP+GS+G K++R+
Sbjct: 30 GELVSVRQEKSPKKYRVELTAHV-HGSEQRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGNVP--------HTDASAGEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVRE 154
BLAST of mRNA_Ecto-sp13_S_contig1397.3095.1 vs. uniprot
Match: A0A6H5JPF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF3_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.410e-10 Identity = 51/119 (42.86%), Postives = 63/119 (52.94%), Query Frame = 1
Query: 103 SKSYRIHLVADLPEGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEG-GNVVERLRDSRHHIEAEAEAEVAAARTKRPRACHASAAEHARPEKRGGKREGAGRPRGSFGPKKLR 456
+K YR+ L ADL +G WRS IK PKG+ RD AE K+ W PS G+ V D+R + R KRPR C +A P KR G EGAGRP+G+FG K+LR
Sbjct: 33 AKKYRLQLTADLSDGSSSMWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRG----SNDTPPPPRGKRPRDCQPAAEILTPPPKRPGY-EGAGRPKGTFGRKRLR 146
BLAST of mRNA_Ecto-sp13_S_contig1397.3095.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 6.600e-10 Identity = 51/119 (42.86%), Postives = 63/119 (52.94%), Query Frame = 1
Query: 103 SKSYRIHLVADLPEGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEG-GNVVERLRDSRHHIEAEAEAEVAAARTKRPRACHASAAEHARPEKRGGKREGAGRPRGSFGPKKLR 456
+K YR+ L ADL +G WRS IK PKG+ RD AE K+ W PS G+ V D+R + R KRPR C +A P KR G EGAGRP+G+FG K+LR
Sbjct: 33 AKKYRLQLTADLSDGSSSMWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRG----SNDTPPPPRGKRPRDCQPAAEILTPPPKRPGY-EGAGRPKGTFGRKRLR 146
BLAST of mRNA_Ecto-sp13_S_contig1397.3095.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 6.650e-9 Identity = 54/121 (44.63%), Postives = 66/121 (54.55%), Query Frame = 1
Query: 106 KSYRIHLVADLPEGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSE-GGNVVERLRDSRHHIEAEAEAEVAAARTK-RPRACHASAAE-HARPEKRGGKREGAGRPRGSFGPKKLRQ 459
K YR+ L A + G R+ W S K PKGR TGRD AE ++ W P GNV H+ EAE A R K +P HA+ + A P KRGG R GAGRP+GS+G K+LRQ
Sbjct: 51 KKYRVQLTAQV-HGSRQRWCSPYNKFPKGRTTGRDWAAEDRWAATWRPFFCSGNVP-------HNDVRAREAEAAPPREKWQPDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRKRLRQ 163
BLAST of mRNA_Ecto-sp13_S_contig1397.3095.1 vs. uniprot
Match: A0A6H5JXV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV4_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 1.800e-6 Identity = 49/142 (34.51%), Postives = 63/142 (44.37%), Query Frame = 1
Query: 70 GSVVSAGLDNKSKSYRIHLVADLPEGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVERLRDSRHHIEAEAEAEVAAARTKRPRAC------------HASAAEHARPEKRGGKREGAGRPRGSFGPKKLRQ 459
G ++S +K YR+ + ADL GV WR+ IK PK K RD AE W PS +D+ ++ E A RTKRPR C H A+ A P GAGRP+GSFG K+L +
Sbjct: 22 GELLSVKQVQGAKQYRLEVTADLG-GVTTRWRTDCIKYPKSNKKARDWAAEAALAAVWRPSHCDRYATLSKDT-------SKVEPAPPRTKRPRDCCQQDLSCGRDHCHTPPAQRAAPA-------GAGRPKGSFGRKRLHE 148
BLAST of mRNA_Ecto-sp13_S_contig1397.3095.1 vs. uniprot
Match: A0A6H5K5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y7_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 2.220e-6 Identity = 47/131 (35.88%), Postives = 59/131 (45.04%), Query Frame = 1
Query: 103 SKSYRIHLVADLPEGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVERLRDSRHHIEAEAEAEVAAARTKRPRAC------------HASAAEHARPEKRGGKREGAGRPRGSFGPKKLRQ 459
+K YR+ + ADL GV WR+ IK PK K RD AE W PS +D+ ++ E A RTKRPR C H A+ A P GAGRP+GSFG K+L +
Sbjct: 3 AKQYRLEVTADLG-GVTTRWRTDCIKYPKSNKKARDWAAEAALAAVWRPSHCDRYATLSKDT-------SKVEPAPPRTKRPRDCCLQDLFCGRDHCHTPPAKRAAPA-------GAGRPKGSFGRKRLHE 118 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1397.3095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1397.3095.1 >prot_Ecto-sp13_S_contig1397.3095.1 ID=prot_Ecto-sp13_S_contig1397.3095.1|Name=mRNA_Ecto-sp13_S_contig1397.3095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp MSSTFSDETWRYFREKYVSLLGDGSVVSAGLDNKSKSYRIHLVADLPEGVback to top mRNA from alignment at Ecto-sp13_S_contig1397:11296..11757+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1397.3095.1 ID=mRNA_Ecto-sp13_S_contig1397.3095.1|Name=mRNA_Ecto-sp13_S_contig1397.3095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1397:11296..11757+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1397:11296..11757+ >mRNA_Ecto-sp13_S_contig1397.3095.1 ID=mRNA_Ecto-sp13_S_contig1397.3095.1|Name=mRNA_Ecto-sp13_S_contig1397.3095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1397:11296..11757+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |