mRNA_Ecto-sp13_S_contig13963.3091.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: D8LTJ2_ECTSI (Rab7L, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ2_ECTSI) HSP 1 Score: 334 bits (857), Expect = 3.970e-113 Identity = 165/169 (97.63%), Postives = 166/169 (98.22%), Query Frame = 1
Query: 1 NQVGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQGMGHIETSAKDGTGVEVAMQAVAVLALEQKR 507
+ VGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKVDLATGL MDGIHGVDKTRV KWCEMQGMGHIETSAKDGTGVEVAMQAVAVLALEQKR
Sbjct: 162 SNVGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKVDLATGLAMDGIHGVDKTRVMKWCEMQGMGHIETSAKDGTGVEVAMQAVAVLALEQKR 330
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: A0A7S2RVV0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVV0_9STRA) HSP 1 Score: 218 bits (555), Expect = 1.580e-68 Identity = 103/169 (60.95%), Postives = 128/169 (75.74%), Query Frame = 1
Query: 1 NQVGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQGMGHIETSAKDGTGVEVAMQAVAVLALEQKR 507
+ VGKTSLM+R+ F++ RR T GADF +K + Q ++LQIWDTAGQERFH G+LG F+RGA+AALLVYD A SF+QV WR E+L R+DV P DFP+VV+GNKVD+ PMDGIHGVDK VT+WC G GHIETSAKDGTGV+VAM+A+ LAL +++
Sbjct: 15 SNVGKTSLMRRFCKNSFSEARRATTGADFSSKRMSFAGQEVMLQIWDTAGQERFHHGTLGGAFYRGADAALLVYDATSASSFKQVENWRSEVLSRIDVAPGDFPLVVVGNKVDMEGNTPMDGIHGVDKAAVTEWCRAHGTGHIETSAKDGTGVQVAMEAIGTLALARRK 183
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: F0Y7J9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7J9_AURAN) HSP 1 Score: 177 bits (448), Expect = 3.700e-53 Identity = 92/169 (54.44%), Postives = 117/169 (69.23%), Query Frame = 1
Query: 1 NQVGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQGMGHIETSAKDGTGVEVAMQAVAVLALEQKR 507
+ VGKTSL+ ++ G FT RR T GADF +K + GD+ + L IWDTAGQERFH G+LG F+RGA+AALLVYD +FEQ+ MWR ELL R+D P +FP+VV+GNKVD+ + ++ V +WC G+G TSAKDGTGV VAM+AVA+LALE KR
Sbjct: 19 SNVGKTSLLMQFVHGKFTPARRVTTGADFASKVLHLGDREVRLVIWDTAGQERFHHGTLGGAFYRGADAALLVYDTTDIRTFEQIEMWRRELLQRIDGPPEEFPVVVVGNKVDVP-----NKTREHEQAAVVRWCRDLGIGLCLTSAKDGTGVAVAMEAVAMLALENKR 182
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: A0A482SWX8_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWX8_9ARCH) HSP 1 Score: 169 bits (429), Expect = 1.880e-50 Identity = 91/163 (55.83%), Postives = 111/163 (68.10%), Query Frame = 1
Query: 19 SLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQGMGHIETSAKDGTGVEVAMQAVAVLALEQKR 507
S R+A G F+ RRPT+G+DF TK++V D + LQIWDTAGQERF+ GS+GS FFRGA+ ALLVYDV S EQ+A WREE L R D + FP+VVIGNK+D+ +P++ VD + V WC GHIETSAKDG GVE AM A+ LALE R
Sbjct: 9 SSFDRFATGRFSGLRRPTVGSDFQTKKMVVHDVEVTLQIWDTAGQERFNQGSIGSAFFRGAHGALLVYDVNDEKSIEQIAQWREECLSRQLEDEY-FPMVVIGNKIDVREKIPVE--RRVDVSGVLTWCREHSYGHIETSAKDGHGVEAAMLAITGLALENMR 168
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: A0A8J2S8J0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8J0_9STRA) HSP 1 Score: 161 bits (407), Expect = 2.210e-46 Identity = 85/169 (50.30%), Postives = 109/169 (64.50%), Query Frame = 1
Query: 1 NQVGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQGMGHIETSAKDGTGVEVAMQAVAVLALEQKR 507
+ VGK+SL++RY F RR T+GADF +K + G++ + L IWDTAGQERFH G++G F+RGA+ ALLVYD +F QV +WR ELL R+D P FPIV +GNK+DL D D+ WC G+G + SA DGTGV VAM+AVA LALE K+
Sbjct: 68 SNVGKSSLLERYTKNSFRPERRVTLGADFASKVIEVGEERVRLVIWDTAGQERFHHGTIGGAFYRGADGALLVYDTTDFATFAQVELWRRELLQRVD-GPEAFPIVCVGNKMDLPCPTRSD-----DEKAAEAWCAAHGVGLLFASACDGTGVAVAMEAVAALALENKK 230
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: A0A7S3K3U1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3U1_9STRA) HSP 1 Score: 156 bits (394), Expect = 6.690e-45 Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = 1
Query: 1 NQVGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQ--PMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQGMGHIETSAKDGTGVEVAMQAVAVLALEQKR 507
+ VGKTSL+ ++ G F RR T GADF ++ V+E DQ + L IWDTAGQERFH G+LG+ F+RGA+ ALLVYD SFEQ+ MWR ELL R+ P +FP+VV+GNK+D+ + + V KWC G+G TSAKDGTGV AM+A+A LA E K+
Sbjct: 20 SNVGKTSLLTQFIHGRFDSTRRATTGADFASR-VLEIDQGRKIRLVIWDTAGQERFHHGTLGNAFYRGADGALLVYDTTDIRSFEQIEMWRGELLQRVQGPPDEFPVVVVGNKIDIPSET-----RDSEFAAVQKWCRDLGIGICLTSAKDGTGVLAAMEAIAHLAYEAKQ 184
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: A0A7S3H9L0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9L0_9STRA) HSP 1 Score: 149 bits (376), Expect = 2.400e-42 Identity = 86/169 (50.89%), Postives = 109/169 (64.50%), Query Frame = 1
Query: 7 VGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQG---MGHIETSAKDGTGVEVAMQAVAVLALEQ 501
VGKTSLM +Y F+ + TIGADF+TKEV+ D+ + LQIWDTAGQERF SLG F+RGA+A +LV+D+ SFEQ+ WREE L + + DP +F VVIGNKVD + V K++VT+WC+ QG + + ETSAKD T VEVA A AL Q
Sbjct: 19 VGKTSLMNQYVNQRFSSQYKATIGADFLTKEVMIDDKLVTLQIWDTAGQERFQ--SLGVAFYRGADACILVHDITAEKSFEQLNSWREEFLAQANPRDPDNFSFVVIGNKVD------KESERRVPKSKVTQWCKSQGPKPIPYFETSAKDATKVEVAFLEAAQAALHQ 179
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: A0A0C2XM57_AMAMK (Uncharacterized protein n=4 Tax=Agaricales TaxID=5338 RepID=A0A0C2XM57_AMAMK) HSP 1 Score: 148 bits (374), Expect = 4.410e-42 Identity = 80/168 (47.62%), Postives = 110/168 (65.48%), Query Frame = 1
Query: 7 VGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQG-MGHIETSAKDGTGVEVAMQAVAVLALEQK 504
VGKTSLM +Y F++ + TIGADF+TKEV+ D+P+ +Q+WDTAGQERF SLG F+RGA+ +LVYDV + SFE + WR+E L++ DP +FP VV+GNK+D+ + V + R WC+ +G + + ETSAKD VE A Q VA AL+Q+
Sbjct: 16 VGKTSLMNQYVNKRFSNQYKATIGADFLTKEVIVDDRPVTMQLWDTAGQERFQ--SLGVAFYRGADCCVLVYDVNSSKSFETLDSWRDEFLIQASPHDPENFPFVVLGNKIDVE-----ENKRQVTQKRAMTWCQSKGNIPYFETSAKDAINVEQAFQTVAKNALQQE 176
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: A0A8H6YCD6_9AGAR (Putative GTPase Rab7 protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6YCD6_9AGAR) HSP 1 Score: 147 bits (372), Expect = 1.250e-41 Identity = 80/167 (47.90%), Postives = 110/167 (65.87%), Query Frame = 1
Query: 7 VGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQG-MGHIETSAKDGTGVEVAMQAVAVLALEQ 501
VGKTSLM +Y F++ + TIGADF+TKE++ D+P+ +Q+WDTAGQERF SLG F+RGA+ +LVYDV A SFE + WR+E L++ DP +FP VV+GNK+D+ + V + R WC+ +G + + ETSAK+ VE A QAVA AL+Q
Sbjct: 32 VGKTSLMNQYVNKRFSNQYKATIGADFLTKEIMVDDRPVTMQLWDTAGQERFQ--SLGVAFYRGADCCVLVYDVNNAKSFEALDSWRDEFLIQASPHDPENFPFVVLGNKIDVE-----ENKRQVSQKRAMAWCQSKGNIPYFETSAKEAINVEQAFQAVAKNALQQ 191
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Match: K5XK14_AGABU (Uncharacterized protein n=5 Tax=Agaricales TaxID=5338 RepID=K5XK14_AGABU) HSP 1 Score: 146 bits (369), Expect = 2.370e-41 Identity = 80/168 (47.62%), Postives = 110/168 (65.48%), Query Frame = 1
Query: 7 VGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKVDLATGLPMDGIHGVDKTRVTKWCEMQG-MGHIETSAKDGTGVEVAMQAVAVLALEQK 504
VGKTSLM +Y F++ + TIGADF+TKEV+ D+ + +Q+WDTAGQERF SLG F+RGA+ +LVYDV A SFE + WR+E L++ DP +FP VV+GNK+D+ +G V + R WC+ +G + + ETSAK+ VE A Q VA AL+Q+
Sbjct: 16 VGKTSLMNQYVNKRFSNQYKATIGADFLTKEVIVDDRLVTMQLWDTAGQERFQ--SLGVAFYRGADCCVLVYDVNSAKSFETLDSWRDEFLIQASPHDPENFPFVVLGNKIDVE-----EGKRQVTQKRAMTWCQSKGNIPYFETSAKEAINVEQAFQTVAKNALQQE 176 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13963.3091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13963.3091.1 >prot_Ecto-sp13_S_contig13963.3091.1 ID=prot_Ecto-sp13_S_contig13963.3091.1|Name=mRNA_Ecto-sp13_S_contig13963.3091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp MKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSback to top mRNA from alignment at Ecto-sp13_S_contig13963:1329..4555+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13963.3091.1 ID=mRNA_Ecto-sp13_S_contig13963.3091.1|Name=mRNA_Ecto-sp13_S_contig13963.3091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3227bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13963:1329..4555+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13963:1329..4555+ >mRNA_Ecto-sp13_S_contig13963.3091.1 ID=mRNA_Ecto-sp13_S_contig13963.3091.1|Name=mRNA_Ecto-sp13_S_contig13963.3091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13963:1329..4555+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |