mRNA_Ecto-sp13_S_contig13961.3090.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13961.3090.1
Unique NamemRNA_Ecto-sp13_S_contig13961.3090.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13961.3090.1 vs. uniprot
Match: D7G0U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.590e-14
Identity = 39/51 (76.47%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:  299 HKTSVNRVGRRGVWDTGQLTGQATFQYNNGDRCTG--ERGRRSGVGTMFAA 445
            H TSVN VG RGVWD GQL+GQAT QYN G+R TG  ERGRRSG GTMFAA
Sbjct:  103 HNTSVNCVGSRGVWDNGQLSGQATAQYNYGNRYTGGFERGRRSGEGTMFAA 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13961.3090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0U9_ECTSI1.590e-1476.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13961contigEcto-sp13_S_contig13961:1667..3921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size456
Hectar predicted targeting categoryother localisation
Exons3
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.0920646-CDS-Ecto-sp13_S_contig13961:1666..18291681462745.0920646-CDS-Ecto-sp13_S_contig13961:1666..1829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13961 1667..1829 -
1681462745.104397-CDS-Ecto-sp13_S_contig13961:2392..25731681462745.104397-CDS-Ecto-sp13_S_contig13961:2392..2573Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13961 2393..2573 -
1681462745.1137927-CDS-Ecto-sp13_S_contig13961:3809..39211681462745.1137927-CDS-Ecto-sp13_S_contig13961:3809..3921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13961 3810..3921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13961.3090.1prot_Ecto-sp13_S_contig13961.3090.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13961 1667..3921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13961.3090.1

>prot_Ecto-sp13_S_contig13961.3090.1 ID=prot_Ecto-sp13_S_contig13961.3090.1|Name=mRNA_Ecto-sp13_S_contig13961.3090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
MCHDHFSSFQICVLGGRTHFHGSTYSRSSERDAKEGQGKSHFADGGDVYA
GEPNGAKCTGKGRSCMAVTVKYTRWTRVQLNLCIEQGTSHHQLDPKIKSA
QNFRESCGAERCVGHRAAHRPSDVPVQQRRSVHWRTGPEERSGDYVRRQV
G*
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mRNA from alignment at Ecto-sp13_S_contig13961:1667..3921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13961.3090.1 ID=mRNA_Ecto-sp13_S_contig13961.3090.1|Name=mRNA_Ecto-sp13_S_contig13961.3090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13961:1667..3921- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCATGATCATTTCTCTTCATTCCAGATTTGTGTGTTGGGAGGGCG
AACTCACTTTCATGGCTCGACCTACAGCCGCTCCTCGGAAAGAGACGCAA
AAGAAGGCCAAGGTATGCCGTGATGACAACCTTTGAACCGCAACTTGTTC
TGGAATAGATTGTTGAACCGTCGTTTGGGATGTGCAGTTCTTGTCGTGTC
ATCAACATCGTTCCAGGGAGCACTGATGGAGGCGGCGTACACCGAGGACA
TTCACTCCACCTTGTGGAAGTGAAATCAAGACCTCAAGGCAGCTCCACGC
TGGCCGTACGATTTCACTTTCGTTCGACGTCCGCACTGCCAGCTACAATA
TAGGTTGTTCATGTCCAAGCGGTCGGAATGAAGAGGACCCAGATTTTTCT
TCGAGAGTAGAGGCATGATGCGTTCTTTTCCTGACATGTGGTGCGTGTCG
ACTTTGTTGTATTTCTTCATGATTTTCACACGCTCACGGTGAATACCGGT
TTTCTAGATCACGGACCAATGCGTCTGTACCCCCGCACCACAGAGGCGAC
CAGTGGTGGCCATCCAGTGCTATTTCGCTCTCAGGTCCAGGAAACTACGA
AATGCAGTAACCTTATCAACATCGACGTTGTTTTAAATAATATTAGCGTT
CCTATATTCACTCAAAAATGGTTCCGCTGCCAACCCGGCTTGTCATGGAT
GACGAGACTTACGTTTGGGACCGGCGTGACAACATGTTCCTCACGGTGAG
TATCCCACCAGAGCTTGCATACACAGGGACATACCCTCAACATTTCAACA
TAAAGCTTCGAATTGTGCATGCCTCCGGGAACGTGCCACTACACGAACGG
AAATACCTACACGGGTTGGTGGAAGTAGGTAGCTTGCGGTACCGTACCAG
ACCTTCGTTACCAGCGACTTTTTCCCAGCAAATATTTGGACAGACGGCAT
GGTGAACGTTAGGGTAAATTGAGCACGCATTTCCTTCGACGTATGCAGTG
GTGGGCTTTCAAACGCACTCGTTCGACAGCTACCGGTGGTGGTAACGTGC
AGTACAACACGTAATGGAAAGCTTGAGCCTGTCACGGTCAAGATGCGCCC
TTCTCCCACTGACCCCGATAAAGGAAGAGAATACCTGTCTGTGGTTCAAG
AACGAAAATTTACAATGACTTGCCCAGTGTGATCGGCATTCCGGCCCACC
GCCGACGACAAAAGTTGCAAAGTCTACGAAACCTGCCAGCTTGTGGTAGC
GCAATGCAGCACGTGTGCGATATTTATACTCTCACCCGGCTGCCCATGCG
ACATTGAAACGGAAAACTTGCCCGCCCCAAGTGCTCGTTTGATGACAGGA
AAATCTCACTTCGCCGATGGCGGCGACGTGTATGCCGGGGAGCCAAATGG
AGCCAAATGCACGGGAAAGGGAAGATCGTGTATGGCGGTGACAGTGAAGT
ATACGAGGTGGACTCGCGTCCAACTAAACCTATGCATAGAGCAGGGAACC
TCACACCACCAACTGGACCCCAAGATCAAGTGAATGGTCGAGTGAATCGT
CTGAATGTGGGGGCATCCTGCCATTCTCGTGGGGTATTGCTGACGATTCG
CCCATACCCGGCAAGTGATCTATGGTGTGATGTTGGAGGGTCACGGCGTT
CACAGTGACCCCAATTCCACCAATGCCGGTGCGTGGAGCAACGACCATAG
GCACGGCGATGGAAAGCTTAGCGACAAGTACGGGAATGTGCTCGAGGGTT
TCTTCAGAGACAGTTTGCAATAGTAACGCTTCACCCCCGGCAGCACTGTT
CGGTGATATTTTCACGTCCCTCTCCACGCAGGAGAAAAGCATGGCAACGG
TTAACTCAGGTCGGCGGCAGGCGACGAGATCGATGGTGGTGACATAGCCG
TTATCGTCGGTGTTCAAGGGATTTCCATGTCGCGCGTGCGCCAGGACCTA
CCATACTTCGCGAAATGCACGTGGTGCTGTGGTTGACGGTACTCGGTCTT
TGGGCACGGGCTCGGTTGCACAGAGACAACACGCAAGGCTTGCCCTAGTG
AAAGCTTATCTAATGCTTGTCACACCTTTTCTGGTTATTCAGGAGCGCAC
AAAACTTCCGTGAATCGTGTGGGGCGGAGAGGTGTGTGGGACACCGGGCA
GCTCACCGGCCAAGCGACGTTCCAGTACAACAACGGAGATCGGTGCACTG
GCGAACGGGGCCGGAGGAGCGGAGTGGGGACTATGTTCGCCGCCAAGTAG
GGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13961:1667..3921-

>mRNA_Ecto-sp13_S_contig13961.3090.1 ID=mRNA_Ecto-sp13_S_contig13961.3090.1|Name=mRNA_Ecto-sp13_S_contig13961.3090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13961:1667..3921- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCATGATCATTTCTCTTCATTCCAGATTTGTGTGTTGGGAGGGCG
AACTCACTTTCATGGCTCGACCTACAGCCGCTCCTCGGAAAGAGACGCAA
AAGAAGGCCAAGGAAAATCTCACTTCGCCGATGGCGGCGACGTGTATGCC
GGGGAGCCAAATGGAGCCAAATGCACGGGAAAGGGAAGATCGTGTATGGC
GGTGACAGTGAAGTATACGAGGTGGACTCGCGTCCAACTAAACCTATGCA
TAGAGCAGGGAACCTCACACCACCAACTGGACCCCAAGATCAAGAGCGCA
CAAAACTTCCGTGAATCGTGTGGGGCGGAGAGGTGTGTGGGACACCGGGC
AGCTCACCGGCCAAGCGACGTTCCAGTACAACAACGGAGATCGGTGCACT
GGCGAACGGGGCCGGAGGAGCGGAGTGGGGACTATGTTCGCCGCCAAGTA
GGGTGA
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