mRNA_Ecto-sp13_S_contig1396.3088.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Match: D7G9B1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B1_ECTSI) HSP 1 Score: 862 bits (2227), Expect = 3.350e-293 Identity = 525/601 (87.35%), Postives = 534/601 (88.85%), Query Frame = 1
Query: 1 GAGSMAVGVVSCLGREIGRALRPDLLPPWANRPAEQGLEEVLVRMTNENLLAQLRSCLVSAVAYPAALALMVMVPTHCKVFLAPRLTSRFLPDFWLSPMVLGIGEPTQGDRLGMDLVIVHFILPVVMEHLKIRGPVRKAACWVLSAACGATGTRGLLLHPALVAGRGAAANDPDDLDDIELPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDANGVGGEAPRAVRGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAQEEXXXX---GGEGYGTRGGLAHVMEATRVYAAGSLVCIALAVVPAATVLLPLVTGRSLFAAMGLPLDDDLPPLVAGGLLCAAWAWALSALFRLQVAAGQHRRLLCNALMLAGKWFVIGALLVGALPGLTGLLVHDALRGPLPPTEETAALTWGKIWALGLVCVKLWARCVLAGAVRDEAWQGRLRRLRDNGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPLMVADQRDLRVIQKGMPFVFLLLKALWLVAMFVVKKTKALHDLIRDDEYLVGLELENMPPQGHADDASTS 1794
GAGSMAVGVVSCLGREIGRAL+PDLLPPWANRPAEQGLEEVLVRMTNEN LAQLRS LVS VAYPAALALMVMVPTHCK FLAPRLTSRFLP+FWLSPMVLGIGEPTQGDRLGMDLVIVHFILPVVMEHLKIRGPVR+AACWVLSAACGATGTRGLLLHPALVAGRGAAANDPDDLDD+ELPQ XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX DA GVGGEAPRAVR XXXXXXXX XXXXXXXXXXXXXXXXXXXXX XXXX GGEGY RG AHV+EA RVYAAGSLVCIALAVVPAATVLLPLVTGRSLFAAMGLPLDDDLPPLVAGGLLCAAWAWALSAL RLQVAAGQHRRLLCNALMLAGKWFVIGALLVGALPGLTGLLVHDALRGPLPPTEETAALTWGKIWALGLVCVKLWARCVLAGAVRDEAWQGRLRRLR+NGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPL+VA+QRDLRVIQKGMPFVFLLLKALW AMFVV K KALHDLIRDDEYLVGLELENMPPQGHADDA+TS
Sbjct: 1045 GAGSMAVGVVSCLGREIGRALKPDLLPPWANRPAEQGLEEVLVRMTNENFLAQLRSFLVSVVAYPAALALMVMVPTHCKGFLAPRLTSRFLPEFWLSPMVLGIGEPTQGDRLGMDLVIVHFILPVVMEHLKIRGPVRRAACWVLSAACGATGTRGLLLHPALVAGRGAAANDPDDLDDLELPQPQAXXXXXXXXXXLPVLGNPQPPAXXXXXXXXXXDGELNDNEGGAADERGVXXXXXXXXXX-DAYGVGGEAPRAVRXXXXXXXXXXEGIGRVEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEGYERRGAFAHVVEAMRVYAAGSLVCIALAVVPAATVLLPLVTGRSLFAAMGLPLDDDLPPLVAGGLLCAAWAWALSALIRLQVAAGQHRRLLCNALMLAGKWFVIGALLVGALPGLTGLLVHDALRGPLPPTEETAALTWGKIWALGLVCVKLWARCVLAGAVRDEAWQGRLRRLRENGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPLLVANQRDLRVIQKGMPFVFLLLKALWSAAMFVVNKMKALHDLIRDDEYLVGLELENMPPQGHADDATTS 1644
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Match: A0A6H5L475_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L475_9PHAE) HSP 1 Score: 525 bits (1351), Expect = 3.510e-180 Identity = 262/276 (94.93%), Postives = 269/276 (97.46%), Query Frame = 1
Query: 967 VMEATRVYAAGSLVCIALAVVPAATVLLPLVTGRSLFAAMGLPLDDDLPPLVAGGLLCAAWAWALSALFRLQVAAGQHRRLLCNALMLAGKWFVIGALLVGALPGLTGLLVHDALRGPLPPTEETAALTWGKIWALGLVCVKLWARCVLAGAVRDEAWQGRLRRLRDNGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPLMVADQRDLRVIQKGMPFVFLLLKALWLVAMFVVKKTKALHDLIRDDEYLVGLELENMPPQGHADDASTS 1794
++EATRVYAAGSLVCIALAVVPAATVLLPLVTGRSLFAAMGLPLDDDLPPLVAGGLLCAAWAWALSALFRLQVAAGQHRRLLCNALMLAGKWFVIGALL+GALPGLTGLLVHDALRGPLPPTEETAALTWGKIWALGLVCVKLWARCVLAGAVR EAWQGRLRRLRDNGFRGVDFKFT+LEVCFPLLDVVGQFYFWPHLLNRFALPL+VA+QRDLRVIQKGMPFVFLLL+ALW AMFVV K KALHDLIRDDEYLVGLELENMPPQGHADDA S
Sbjct: 1 MVEATRVYAAGSLVCIALAVVPAATVLLPLVTGRSLFAAMGLPLDDDLPPLVAGGLLCAAWAWALSALFRLQVAAGQHRRLLCNALMLAGKWFVIGALLMGALPGLTGLLVHDALRGPLPPTEETAALTWGKIWALGLVCVKLWARCVLAGAVRHEAWQGRLRRLRDNGFRGVDFKFTILEVCFPLLDVVGQFYFWPHLLNRFALPLLVANQRDLRVIQKGMPFVFLLLRALWSAAMFVVNKMKALHDLIRDDEYLVGLELENMPPQGHADDARPS 276
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Match: A0A6H5L2V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V3_9PHAE) HSP 1 Score: 102 bits (254), Expect = 8.420e-23 Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 1
Query: 340 MDLVIVHFILPVVMEHLKIRGPVRKAACWVLSAACGATGTRGLLLHPALVAG 495
MDLVIVHFILPVVMEHLKIRGPVRKAACWVLSAACG TGTR LLLHPALVAG
Sbjct: 1 MDLVIVHFILPVVMEHLKIRGPVRKAACWVLSAACGVTGTRRLLLHPALVAG 52
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Match: A0A7S2SRU5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRU5_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 4.710e-16 Identity = 71/248 (28.63%), Postives = 114/248 (45.97%), Query Frame = 1
Query: 1015 ALAVVPAATVLLPLVTGRSLFAAMGLPLDDDLPPLVAGGLLCAAWAWALSALFRLQVAAGQHRRLLCNALMLAGKWFVIGALLVGALPGLTGLLVHDALRGPLP-PTEETAALTWGKIWALGLVCVKLWARCVLAGAVRDEAWQGRLRRLRDNGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPLMVADQRDLRVIQKGMPFVFLLLKALWLVAMFVVKKTKALHDLIRDDEYLVGLELEN 1755
ALA+ +A +L+PL GR L + DL ++G +C W L +L A +H + L+ + + LL+ A P L G L P P +ET A W + WALGLV +K+W R ++ G DE W+ R+ G V F++ M EV P + + +P + P + + + +Q+ F+ ++ + V+ + +HD IRDD YL+GL+L N
Sbjct: 888 ALALSASAALLVPLTLGRHLQSLWTWWPKHDLYSFLSGAGMC----WGLISLAAGFHGAARHWHHVHRWLVSLARCSALVLLLLAAAPLLLGCLFEQMFVIPFRLPLDETVATPWVQNWALGLVFLKIWIRVMVLGG--DEVWRRRIDEFYRQGIHAVPFEWAMKEVALPTIVTLADAMAFPVVFGHLVAPAVASSIQQHAALQRLAFPTFVGVRVASIAGHHAVRYLRNVHDKIRDDRYLLGLQLNN 1129
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Match: A0A836CLY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY3_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.560e-12 Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 1438 WQGRLRRLRDNGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPLMVADQRDLRVIQK-GMPFVFLLLKALWLVAMFVVKKTKALHDLIRDDEYLVGLELENMPPQGHADDA 1785
W R R+R G RGV+F + +CF +L+ VG+FYF P+ L + PL++ D L + + G P +L L + FV+K LHD IRD+ +LVG++L N +DA
Sbjct: 31 WARRFERVRARGIRGVEFNWAAYHICFRILNSVGEFYFVPYFLTKGVAPLLLEDPVTLDTLHRLGCPL-YLAGHVLISLMGFVLKWMLKLHDTIRDEAFLVGVQLANSELHAAEEDA 146
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Match: A0A7S2YUB4_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2YUB4_9CHLO) HSP 1 Score: 73.6 bits (179), Expect = 2.070e-10 Identity = 80/244 (32.79%), Postives = 109/244 (44.67%), Query Frame = 1
Query: 1048 LPLVTGRSLFAAMGLPLDDDLPPLVAGGLLCAAWAWALSALF-RLQV----AAGQHR--RLLCNALMLAGKWFVIGALLVGALPGLTGLLVHDALRGPLP-PTEETAALTWGKIWALGLVCVKLWARCVLAGAVRDEAWQGRLRRLRDNGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPLMVADQRDLRVIQKGMPFVFLLLKALWLVAMFVVKKTKALHDLIRDDEYLVGLELEN 1755
LPL GR L +G P+ DL ++ GG L W ++A F R+Q A G R R+ + + L KW ++GAL + +P L G LVH L PL P + + IWA+GLV +K+ GR + NG DF + E C PLL + P+ + LP Q R G P + LL L A+ K LH+ IRDD+YLVG +L N
Sbjct: 89 LPLFLGRQLCKLIGFPVHHDLYNILVGGYL----VWGIAAAFVRVQRNFLRADGLQRFARVALDRVRLVAKWSILGALWLVMIPALLGTLVHLTLVVPLVVPLNSSPIFSGPLIWAIGLVSLKV----------------GRFGGVDFNG----DFMPQLSEAC-PLLFSLTACLCVPYSVVHTVLPSSNLRQVAYRY---GYPLLALLYFYLQYSAVLKSGYWK-LHNTIRDDKYLVGRKLVN 303
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Match: A0A4D9D9P7_9STRA (RING-CH-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9P7_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.020e-8 Identity = 63/224 (28.12%), Postives = 101/224 (45.09%), Query Frame = 1
Query: 1222 LMLAGKWFVIGALLVGALPGLTGLLVHDALRGPLP-PTEETAALTWGKIWALGLVCVKLWARCVLAGAV-RDEAWQGRLRRLRDNGFRGVDFKFTMLEVCFPLL-----------------DVVGQFYF------------WPHLLNRFALPLMVA------DQRDLRV-----IQKGMPFVFLLLKALWLVAMFVVKKTKA----LHDLIRDDEYLVGLELEN 1755
L+ AG+ ++ AL + LP L GLL A+ P P +ET + + W LGLV +K+ RC+L G + D W+ + R+ NGF +DF +T+ V P++ + +G Y P L RF L ++ +RD V + G+ + + LW ++++ + + LHD +RDD YLVG+EL N
Sbjct: 715 LLRAGQAALLLALWLLLLPLLVGLLFELAVILPARVPMDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDHPWKRKFERVGANGFWNLDFAWTLRHVVLPVICLFLSLLLPPYFFSKSVERLGYLYLRHVVLPAPLHPALPRFLPRFLLRVLAPAWHAQEQERDAYVSLVLYMIAGLKRMVYVAYLLWRLSVYGARGLHSGFRHLHDKLRDDVYLVGVELRN 938
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Match: A0A8J1UT09_OWEFU (Ofus.G18400 protein (Fragment) n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UT09_OWEFU) HSP 1 Score: 65.1 bits (157), Expect = 4.680e-7 Identity = 46/184 (25.00%), Postives = 97/184 (52.72%), Query Frame = 1
Query: 1225 MLAGKWFVIGALLVGALPGLTGLLVHDALRGPL--PPTEETAALTWGKIWALGLVCVKLWARCVLAGAVRDEAWQGR-LRRLRDNGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPLMVADQRDLRVIQKGMPFVFLLLKALWLVAMFVVKKTKALHDLIRDDEYLVGLELENMPPQ 1767
+LA K ++ ++++G +P L G L + PL P + W + WALG++ K+ + G + W R + ++ ++G R ++ +F ++E+C+P++ V+G P+++++ +PL +I++ + V L + V + ++ K L++ I++D+YLVG L N P+
Sbjct: 776 ILALKGVLLASIVIGLVPLLLGWLFELVVVTPLRVPLDQSPVYFPW-QDWALGVLHAKIICAITMMG---PQWWLKRAIEQVYNDGLRNMNIRFILIELCWPVVGVLGFTLAGPYVISKSIVPLFGLGFELEYLIERRIYPVLLGGTVVLTVCLVQARQFKRLYEHIKNDKYLVGQRLVNYIPR 955
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Match: A0A7S2CYG7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CYG7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 6.220e-7 Identity = 84/296 (28.38%), Postives = 122/296 (41.22%), Query Frame = 1
Query: 1048 LPLVTGRSLFAAMGLPL---DDDLPPLVAGGLLCAAWAWALSALFRLQVAAGQHRRLLCNALML---------------AGK--------WFVIGALLVGALPGLTGLLVHDALRGPLPPTEETAALTWGKIWALGLVCVKLWARCVLAGAV-------RD--EAWQGRLRRLR--------DNGFRGVDFKFTMLEVCFPLLDVVGQFYFWPHLLNRFALPLMVADQRDLRVIQKGMPFVFLLL--------KALWL-VAMFVVKKT--------KALHDLIRDDEYLVGLELEN 1755
LPL GR F+ + +PL D L V G++ AA +A G H L NALM A K W + L+VG L +T ++ D+ E L G+ W LGLV + LWA L+ V RD WQ R+ R+ D + V + ++++ P+ +G+ +P L A+PL A LR + + + F ++ +AL L VA + KT + LHD IRDD+YLVGL+L N
Sbjct: 702 LPLSLGRRFFSLLHVPLRLSHDPLAFAVGMGIILAAKG---------AIARGIHWLLTPNALMTSMGTWARRLHPPPSTAAKAMILFVTLWLGVAPLMVGTLFEMTLVVAADSWEA-----EGLRCLALGQDWVLGLVLLHLWAYLSLSNVVNGLWIQRRDALNPWQQRIERVVLAWHSLVVDQSWDLVTMQTMVVDLAMPITWTIGKALIFPFSL---AIPLAGACPLMLRFLPRSIGTSFFMVGAKVTHFRRALALCVASLLASKTIEPLSDFVQKLHDAIRDDQYLVGLQLLN 980 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1396.3088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1396.3088.1 >prot_Ecto-sp13_S_contig1396.3088.1 ID=prot_Ecto-sp13_S_contig1396.3088.1|Name=mRNA_Ecto-sp13_S_contig1396.3088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=595bp MAVGVVSCLGREIGRALRPDLLPPWANRPAEQGLEEVLVRMTNENLLAQLback to top mRNA from alignment at Ecto-sp13_S_contig1396:7108..17304- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1396.3088.1 ID=mRNA_Ecto-sp13_S_contig1396.3088.1|Name=mRNA_Ecto-sp13_S_contig1396.3088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10197bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1396:7108..17304- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1396:7108..17304- >mRNA_Ecto-sp13_S_contig1396.3088.1 ID=mRNA_Ecto-sp13_S_contig1396.3088.1|Name=mRNA_Ecto-sp13_S_contig1396.3088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1785bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1396:7108..17304- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |