mRNA_Ecto-sp13_S_contig13956.3085.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE) HSP 1 Score: 431 bits (1107), Expect = 3.380e-134 Identity = 214/221 (96.83%), Postives = 218/221 (98.64%), Query Frame = 2
Query: 2 LSLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLVAQKVGEVEAFNVREAFLGGETGR 664
LSLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMK+GIAAGLRRGRH HRHGLGGLLPDTVDYQIKGLTDGNRLSVFV+CQQRENSANMGRRFGNS+LFHKLLARECNRHGISYTLPAQPLVAQK GE EAFN+REAFLGGETGR
Sbjct: 809 LSLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKNGIAAGLRRGRHCHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVVCQQRENSANMGRRFGNSNLFHKLLARECNRHGISYTLPAQPLVAQKGGEAEAFNIREAFLGGETGR 1029
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: D8LMN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN4_ECTSI) HSP 1 Score: 390 bits (1002), Expect = 2.870e-129 Identity = 189/193 (97.93%), Postives = 192/193 (99.48%), Query Frame = 2
Query: 86 KAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLVAQKVGEVEAFNVREAFLGGETGR 664
+AYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRH+HGLGGLLPDTVD+QIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLVAQKVGE EAFNVREAFLGGETGR
Sbjct: 11 RAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHKHGLGGLLPDTVDFQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLVAQKVGEAEAFNVREAFLGGETGR 203
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: A0A835YNU8_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU8_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.230e-28 Identity = 84/198 (42.42%), Postives = 112/198 (56.57%), Query Frame = 2
Query: 2 LSLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLL---PDTVDYQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQ 586
+SL VAFSFLFGSSA+ FFES VF+FVT+AYDVGD VY D+ E Y+V RINMLTTVFRRWD T++ N +AK+ IRN RS + + VS+ TP KL+ +K R + R G L P++VDY + + + VF + Q+ + + + N L LA C+ G+ Y LP Q
Sbjct: 938 VSLVVAFSFLFGSSAANFFESCVFIFVTRAYDVGDRVYIKDELNDEANYVVQRINMLTTVFRRWDDHYTILPNQQLAKREIRNMRRSGDGVMLMTLLVSIATPRAKLEALKE-------RMQEYARAVTGPLYSCDPNSVDYCCRRVISCTNMEVFFVYSQKGSWQDNYLKVKNFHLMSLRLAEVCHELGLEYALPTQ 1128
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: D7FX36_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX36_ECTSI) HSP 1 Score: 106 bits (265), Expect = 5.520e-20 Identity = 65/201 (32.34%), Postives = 111/201 (55.22%), Query Frame = 2
Query: 5 SLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDD--TGGEDWY--IVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLV 595
S +AFSF+ G++AS +++F+FV++ YDVGD V+ DD T G + +V ++++ TT FRRWD Q I N+++A K I N R++ H I V+ T +KL+ + + ++ + GL P + + + G+ D RLS+ ++ +QR N NM +++ S+ + C+ GI+Y LP P+V
Sbjct: 825 SFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYDDVQTAGVEPMNVVVVKVDLRTTSFRRWDEQIFYIPNHLLADKTIVNIQRTAHQWHEFYIHVAATTSSQKLETLHDALQKFAKK-----KDKPEGLHP-RMGFSLTGIEDSTRLSIRIIFRQRGNWQNMDKKWACQSMCTWAIKNACDTIGITYYLPEVPIV 1019
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE) HSP 1 Score: 106 bits (264), Expect = 7.930e-20 Identity = 65/201 (32.34%), Postives = 113/201 (56.22%), Query Frame = 2
Query: 5 SLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDD--TGGEDWY--IVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLV 595
S +AFSF+ G++AS +++F+FV++ YDVGD V+ DD T G + +VT++++ TT FRRWD Q I N+++A+K I N R++ H I V+ T KL+ + + + ++ + GL P + + + G+ D RLS+ ++ +QR N +M +++ S+ + C+ GI+Y LP P+V
Sbjct: 966 SFLIAFSFMIGTAASNLMTAVLFIFVSRLYDVGDRVHIYDDVQTAGVEPMNVVVTKVDLRTTSFRRWDEQIFYIPNHLLAEKTIVNIQRTAHQWHEFYIHVAATTSSRKLETLHNALQQFAKK-----KDKPEGLYP-RMGFSLTGIEDSTRLSIRIVFRQRGNWQSMEKKWACQSMCTWAIKNACDTIGITYYLPEVPVV 1160
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: A0A5C3EGN5_9BASI (EF-hand domain-containing protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EGN5_9BASI) HSP 1 Score: 98.6 bits (244), Expect = 1.570e-17 Identity = 66/194 (34.02%), Postives = 95/194 (48.97%), Query Frame = 2
Query: 14 VAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMA-KKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPL 592
V FSF+FG+SA FES++F+F T YDVGD V E+W V +L+T FR Q + N ++A KK I N RS TMI VS DT +E L+Q++ A LR + GG L D +T N + + V + + N + G R+ + + + C GI Y++P QP+
Sbjct: 625 VGFSFIFGNSAKNIFESMIFIFATHPYDVGDLVCI-----DEEWMFVKEFGLLSTTFRTTVNQEVVAPNAMLATKKYIYNSRRSGAQWEFTMIQVSFDTSLETLEQLR----AKLRAWTKENDREFGGPL----DVNFNSITQQNAVELIVAFEHKSNWQDWGARWERRTKLMRRIKTACEELGIVYSMPPQPI 805
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: A0A835Z0M4_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M4_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.800e-17 Identity = 65/196 (33.16%), Postives = 101/196 (51.53%), Query Frame = 2
Query: 5 SLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVD--DTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQ 586
S ++F+F+FGS+A+A ESI+FVFVT AYDVGD + D T V +IN+LTTVF R DGQ+ ++ N ++++ A+ N RS ++ VS TP+ KL +K + H +G + + D +L V + Q R N ++ RR+ + + +A C GI++T P Q
Sbjct: 776 SFLLSFTFMFGSTATALVESIIFVFVTSAYDVGDRLMIPDIMQTSRYHGCKVVKINLLTTVFERGDGQSLIMPNKLLSQMALINLQRSGNMWFEFVVGVSATTPLHKLHSLKGRMQKFANEDSSGIYHKIG--------FTFTEIQDSAKLVVRINVQGRFNWGDVKRRWEVHNATCQAIAHHCAELGITFTPPVQ 963
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: A0A167LJ94_PHYB8 (EF-hand domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167LJ94_PHYB8) HSP 1 Score: 98.2 bits (243), Expect = 2.290e-17 Identity = 62/197 (31.47%), Postives = 100/197 (50.76%), Query Frame = 2
Query: 14 VAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLVAQK 604
+AFSF+FG+SA FE+I+FVFVT +D GD V+ G E+W +V + +L T F +WDG N+I+A + I N R+ R I V TP K+++++ + + + PD+ I + NR+++ + +N + G R+ + + L C R GISYT+P QP+ +K
Sbjct: 683 IAFSFVFGNSAKDAFEAIIFVFVTHPFDAGDRVFI----GSENW-VVNNVGLLVTTFNKWDGSIVYAKNSILATQYIINCRRTGRTCEGIDIHVHFSTPGWKINRLRDEMFEWSNKFPKLYT-------PDSTSANIISFENLNRITISFYFEHTQNWQDAGGRWMRHNNYMMELKETCERLGISYTMPNQPVDLKK 867
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: A0A835YTT2_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT2_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.010e-17 Identity = 64/204 (31.37%), Postives = 103/204 (50.49%), Query Frame = 2
Query: 2 LSLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLLPDTVDYQIKG-LTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLVAQKVG 610
+SL +A SF+F +SA ES VF+FVT+ +DVGD V+F DD G ++ ++V RIN+L+TV +RWDGQ + N +A + IRN RS + + V D E L + + + A R H L+PD++ + G L V V Q ++ + R+ + ++ ++ LP QP++ + G
Sbjct: 464 VSLLLAGSFVFSTSAQGLCESFVFIFVTRPFDVGDGVHFRDDMGQDNVFVVHRINLLSTVLKRWDGQYVVWPNRFLALREIRNMRRSGPQSNTLTVFVRRDASAEALARYRDALRAAARAAPRDHA-----LVPDSIGAAFRADAGGGTALEVCVSYTQVQSWQDANERWRTHAFLARVALTLRASLALAPDLPTQPVLLRGSG 662
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Match: A0A317Y1M2_9BASI (EF-hand domain-containing protein n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317Y1M2_9BASI) HSP 1 Score: 97.1 bits (240), Expect = 4.830e-17 Identity = 65/197 (32.99%), Postives = 98/197 (49.75%), Query Frame = 2
Query: 14 VAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMA-KKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHRHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLVAQ 601
V FSF+FG+SA A FES++F+F T YDVGD V +DD +W V +L+T FR Q + N ++A K I N RS +T+I VS DT +E ++Q++S + A + GG L D ++ N + + V + + N + G R+ + + + C GI Y LP QP+ Q
Sbjct: 628 VGFSFIFGNSAKAIFESMIFIFATHPYDVGDLVC-IDD----EWMFVKEFGLLSTTFRTTVNQEVVAPNALLATSKYIYNSRRSGAQWEYTLIQVSFDTSLETIEQLRSKLRAWTKENDRE----FGGPL----DVNFNSISQQNAVELVVAFEHKGNWQDWGARWARRTKLMRQIKTVCEELGIVYQLPPQPISFQ 811 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13956.3085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13956.3085.1 >prot_Ecto-sp13_S_contig13956.3085.1 ID=prot_Ecto-sp13_S_contig13956.3085.1|Name=mRNA_Ecto-sp13_S_contig13956.3085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp MLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEback to top mRNA from alignment at Ecto-sp13_S_contig13956:572..4276- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13956.3085.1 ID=mRNA_Ecto-sp13_S_contig13956.3085.1|Name=mRNA_Ecto-sp13_S_contig13956.3085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13956:572..4276- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13956:572..4276- >mRNA_Ecto-sp13_S_contig13956.3085.1 ID=mRNA_Ecto-sp13_S_contig13956.3085.1|Name=mRNA_Ecto-sp13_S_contig13956.3085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13956:572..4276- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |