mRNA_Ecto-sp13_S_contig1395.3084.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1395.3084.1
Unique NamemRNA_Ecto-sp13_S_contig1395.3084.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1395.3084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1395contigEcto-sp13_S_contig1395:11449..17349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size557
Hectar predicted targeting categoryother localisation
Exons3
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462744.441217-CDS-Ecto-sp13_S_contig1395:11448..118341681462744.441217-CDS-Ecto-sp13_S_contig1395:11448..11834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1395 11449..11834 +
1681462744.4497535-CDS-Ecto-sp13_S_contig1395:16697..167811681462744.4497535-CDS-Ecto-sp13_S_contig1395:16697..16781Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1395 16698..16781 +
1681462744.4578488-CDS-Ecto-sp13_S_contig1395:17262..173471681462744.4578488-CDS-Ecto-sp13_S_contig1395:17262..17347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1395 17263..17347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1395.3084.1prot_Ecto-sp13_S_contig1395.3084.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1395 11449..17347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1395.3084.1

>prot_Ecto-sp13_S_contig1395.3084.1 ID=prot_Ecto-sp13_S_contig1395.3084.1|Name=mRNA_Ecto-sp13_S_contig1395.3084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
AVGPTRCVERRPQAARGDSEREKASGVHARPGEENWRSEMKRISLRRALS
LRVGGGAEASRNTEGYELSPPQQQQQQRQPLAPREAAGEGPDEGHRQQQQ
QPAMQQAPTKKAEMMNIDAVSSNAYSEGRGEDPDMPPQLAKLGENMDVRR
DRRVQSSRVRPESIRLFEASASQSHHGVASRGVSG
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mRNA from alignment at Ecto-sp13_S_contig1395:11449..17349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1395.3084.1 ID=mRNA_Ecto-sp13_S_contig1395.3084.1|Name=mRNA_Ecto-sp13_S_contig1395.3084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5901bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1395:11449..17349+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTCGGCCCTACTAGGTGTGTGGAACGGCGACCCCAGGCTGCGCGAGG
GGACAGCGAGAGGGAGAAGGCGAGCGGTGTCCACGCGCGTCCGGGAGAGG
AAAATTGGCGGAGCGAGATGAAGCGAATATCGCTGCGTCGCGCCCTGTCT
TTGCGAGTCGGCGGCGGGGCAGAAGCCTCGCGGAATACGGAAGGTTATGA
GCTTAGCCCCCCACAGCAACAGCAACAGCAGCGGCAACCTCTAGCGCCGA
GGGAGGCTGCCGGCGAAGGCCCCGACGAGGGACACCGACAACAGCAGCAG
CAGCCTGCGATGCAGCAAGCGCCGACGAAGAAAGCGGAGATGATGAACAT
CGACGCCGTCAGCAGCAACGCGTACTCGGAGGGCAGGTGCGCGAGAGAAA
TATACTGCTGCTGCCTCTGTTTGTTTGGCGCTGCCTTGTGCTCCTGTTGT
ACAGAGGCGGAGCACGAGGCTGGCTGGCTTCTTCTTCATTAAACCCCGCC
CGCCCCATGCCCGCGGTGTCCTAAACGGATGGCCTTCGCGCAGAGATCTC
TAGTGCACCCTCTGGCCTGGAGGTATTCTTGGCGCCATAGATGTTGGTTG
CCCTCACCCGCGGTTGTGCGTGCCGGCAGCACGATTCTTACTGCCAACAC
AACACATGCACCAACGGCACGAAAGAAGAGAGGCAGCGGTAGCAAGCGGA
GAGAGGCTGACGGTCTGCTGCGAACACTGCCTCCCCTCCTCGAAATTGAA
AATGTTTGTTCTCGGTCTTCTTTTCCCTGCCGGCCCGCGGGTGTTTTTAC
CTGCGGAAAGCATCTGCCTTAGAAGAGAGGCAATGGCGGTGTGTTGGTGT
CGATTTCCGGAGAGGTTGCGTTGTCATGAGGTGCTCTCTTGCGGAGGGTA
AACTGACTCTGTCGGATCGACAAACCACATGGAATGAGGGTCGTGAATTG
AAGTTGGACACCTGCTACTTCGACACATATTTTTACGATGCTGTACAGAC
GAGTGTCCGTCCCCCGTTGAAATTGGAAATTTGCTCGCAAGTGTACAATA
TCGAGCCTGTCTCCGATGTATCTATGGATCCTTATATATCCAATGAGCGG
TTTTATAATGTGAAGAACAACAAAACTACCATCACCTTGTGGCGGGCAAG
ATGGTTTCCATACCATGCAAAACTTGGAATATTCTGTGCAGCCTGGTGCG
TTGTTAGGACAGCACCTCAACGGCTTTGACACAAAGAAGCAACCTGATGT
ATGTGCCTTGCCTATGCAGGTCTCTCCCTTAATATAGCTTTAGTAGGTAA
CGCGTCTACGCCATCCAGTATACTTTTACAAGTAACCTCGCTCTCGTGTC
CAGGCCAACCAGAGACGATTGACCTTCACTAGCCCACAACAGAGTGCCAC
AGGCTTTCTTCTTGTTGCTTGTCCTTGGCTGCACGAACCGGGGGTGTCGT
GCTGAGCCAAGCGCTCTCCGCTTGCATCTGCTGTAGGCCGCAACGCCGGG
TCTCTCAACACACGTTGGAGCAAAAGATCGCACAGAGAATAGGAGAGGAA
GGATGGGTTGTAGATTGACGTGCAGGCAGGCAGGCAGGTACCACACTAAC
CGCAAAGAGTTCGTCCTGCTGCCGTGACGAAGAAGCAACAACACCTTCAA
GAAGTCTCCCTTGGCTCGCCCACATACAGACATACAGCACATTTACCCGT
GCTCGCTAGTAACATGCACATACAGCACATGCATCTGAACATACACACAG
CCCTTTTATGTGAGGGGGACGACTGAAGCGGAGATAATCGAGGTGTCGCG
ACCTCGCGCGACAACGCGCCGCGCCTGGATCTTCGGACAGGAGTCATGTG
GGAGGAACGAAATTCTCTTACGTACATACTCTCGTACATACATACTCAGC
ATGTTGCAACCTTTAGACAAGATGGGTCCCATGCATACGATACATTGCTC
CGTGGTTTGCATCATGGTGAGAACCAACCAAGTGCGTGTGCGTGGTATAG
TAGTGTTCTTGTGCCCTCAGTCAGGTTATCTCGCAGTCAAAAGCGAAGAT
CACCACCACAATGCGTTGGAACTGAAGACATGTGGACCGCGATTTAGACA
CCATCGAACGCTTCTATTATGGCCACACACTCACCAGCAACCGGGCGACG
TTGGTGATACGTCCTTGCCAACAGGCCAGCAGTTGAGGTCTGAAAATATC
TGAGACCTGTGACGACCAGGACTCGTCTTAGGCATGCCCGTCCTTTTTCA
GCGAAAGGCTGGGCGGCTAACCGGGGGTATGTATACGATGTATGTATAAT
TTTTTTTTTCTCCCATTCTGTCGTCTGCCCCACTGGCCCACTTCCTCCAC
TTCTACTAGCTAGACGACCTTAATATATTTATTTTCTCCCATTATTGGAA
TCTGTCGTCTGCCCCACTGGCCTACTGTCTCCACTTCTATTAACTAGACG
ACCCAACCGGAGTCACATAAGACGGGGGGGGCTGGACCCCCTCCTGCGGT
TCCTACCTGAGGTATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCT
CGCGACTTACGAAGTCGATCAAGTTTGCTAACGACGAGCTTTGACGCGCG
TCGCTTCCATGTGAGACCAGGATTTATTTAGTGAGAAAGGAACTCAATCT
GGCGGGATCCGAACCCATGACGTGGCCCTCACCGGGCGGCGAGGGTGCCC
ACTAGACCACCGGAGCAACCGGTGTAGATGCCTACGTATGTTTGCATACC
CGCTGCGAGCTTGGTGAGTCCGAATACCACATGTTCCCAGATGCCGAGAA
GGAGGCCACAGATTTTGACAGTCACCGTAAGGGGTGTACTCGGTCTACTA
GCCCACGCAGGAGAACATGTCATCGGTCTCCACCCGCCGTTCTCCTGGTT
GGTGGCTTTTTCACGCCGACGTGGTAGAAATCCATCCTTATATATGGACG
AAACTAAAAAGTCTGGTCGACGCAAGCGCAAGAAACCGTCCAGCAGAGCC
GCTGGTTTCCGCCCCACGTGGCGGCGAAGGCTGCCGCGGCGAGTGGTGTC
CACGGCGATACTACGGTTGAAGCGTAGCAGACAAGCGTACCAAGGAGATC
GCTTTCGTTCCTAAGGGACGCATGAAAGAACCTCCCTCTCGGTGAAACTA
AAGTTGACGCACGCGGGATTGGTGAGGAACGAGGAACTGTCGAAATCCAA
GTTGGGCACTGTCCATAAAACACTCTTGTTGCTATGCTATGCTATCACGG
GCTCCTTTTGTGTGAAAGGGATTGATTTGTTGTGTTTATCGCGAAAAAAA
TATAAAGAAGGTGGTTTCTTGAGCGTGGAACGATCACCTGCCAGACGTAC
CGTAGGCTGTGACGGAAGATACCGTACCCCCTGGACAGGTCTCCAAAGCT
TGATTGATGGGGGGGAGCGAAAATGATGTGATGCGTTTTCGACATTCCGT
CGGCGAGTCGATCATCGCCGCCATTTTCGGCACCATCACAAATTTTGCTG
CACGAGAAGTCGAGCTATGAGAATCGGTCCGGGGGGTGTGGTATCTTACG
CAATCTATCTACTGTGCAATCGACGGCGATGGTGTATGAATGGCGCTATT
ACAGCACCCGAGATTCCCCTCACCTACTGCCGTACACTCTTCCTGGAGCG
ATAAATCGATTGCAGTAGGAAAGTCCCCGACGCTCACCAGCTGTGTTGCC
TCCTCTTTCGGCACGTAGCCTCCGCGGCTACCGTTGTTTTGGCGGGGCAT
AGGCTCTGTCATGCCTCCCACTTCTCCACCTCCCGGGAGAAGGAGGAAGT
AATCTTCTTGCTCTTTCTGGCGGCTCGCCCGTTGTACGTCAACGGGGAAT
CCACGTAGACCTCCTGGCTGTCCACTGATAGGTCGGTGCGCGTCGTTTCC
TGCGGGGGGTATAGCCCGAACAGCGACTGCTTTGAAACAGATTCTTCCCG
GGAGCACCTGTTCTTGTGGTAAAGTCCCGAAGTTTGTCTTTCTTTGAGCC
TATGAGTGTTGTTATAACTCCCACGTTGTTCGTCAGGGGCGGCGCGTATG
GTTAATGCCGTAGTACCGAGCACCATTATACATAAGTCGTTTCTTGTTCG
TCTCCCTAGCTCTTTGCCTCTCTCGCGGGCGGGTTGTGAGAGGGGAAAGG
GAGCGGGCGTCAGTTGTGGCCGGGAGAACCCCCGATGTTTTGCTGTCTCG
CGTTATCTGTAGACCTGGCTCTGCACGTCTGTGTGTGTGTGCAAAAGCGA
GGCAGCAGAGCGGGGTTGTGCGTCGCGTTGCCCCTTCAGCGTGCTGTATT
CACACTTACCAGGCTCGGTTCAAGCGACACGTCATTGCTGTGGTGTCATG
TACTAGAGGCCCTCATTTTTGTCTGGAAAGCCAACCATCCCCCAGGCGAG
CGCCCGGCGTGCGTATGTGTTTCCCAGGTGGTTATTAGCAACGACCGCGC
TTGCTGGCTGGCGAATCAAAAGGCGCCGGTCTACGTGATAATTTTAAAAC
ACACGAACACGCTTCCTTTATGGACTATCTTGTAGGGTTATGCCGACAGG
AGGGGCGCAGGCGTCATGTGTGTGTGTGTGTGTGTGTGTTTAATAGAATT
GACCGCGCTAGCGGGCTGACCAATGAAATACGTCGTGTCTGCGGGTACGA
TGAACGTCGTCACGAAGGGGCCAGAATTCGATAAACAGCCGTCGCCCGGG
ATGATAACGTTTATGTTCGATCTCCTCTACCAAATAAACTAACGTTTCAC
GCAGGCTGGTCGCCCGGGCCTAAAGAAGCTGCTGGTACACAGAGCGCGGA
GGGCTGCAAAAATGAGTAGATTTGAAGCCCTGCTGAAAGACAGCAGTGGT
CGACTTCAATCAAACTCGTGAATTTTATTTTTTTTCCGTCATATTGTGTG
CCACCCAGCTCCACGCGGCAAGGGCGTCCGGGAGGTTTCCTCGCAGTTTC
AAGTTCTTGATCATCACCCACCCAAATATTTTTTTTTCTCGTCAACCTGT
GTGCCAAGCCGCTCGATCCGACGCGGCCGGGCCTGTTTTGGAGTTCCGCA
GTTTGGCGTTTTCTTGACCATCACCCACAAAACCAAGCTCTCAAACTCGA
GTTTTTGTTGTTGTCGCTTTTGTGTCCCAACCCGCTCGGCCGCGGGGGGG
TTCGGGGGGGTTCTGTAGTTTCACGCTTTTGACCATTACCCACACAACCG
TTTTTTTGTTGTCACGTTGTGTCCCAAACCGCTCTGTCCCACGCGGCAGG
GGCGAGGACCCGGACATGCCGCCCCAGCTCGCCAAGCTCGGGGAGAATAT
GGACGTCCGAAGAGATAGGCGTGTGCAGTCAAGGTGGGGAAAAAGGCGTC
TAATTCTTTGTTTTCGTACGCTACGGCTTGCTCAAGTGTGTGCGATCAAG
GTGGAGGAAAAGCGTCCGGTTTTGTTTTTCTTACTTTGCGTTTTACCAAC
AAAGAACGGAGTTGAGGTGAACAAAAAGGCGTCCAATGAAGGACATATTT
GTTTGGTACACGAGTGCTTGCTTAAGTTACCCCCTCCCGTGGATAGCCTA
GGAGACGACGGTAGCTGTACCGGGGCATAGGACGTGGGTTGAATCGGCAG
GAAGTGATATCGATAGGATAGATACGCTAGGGAAAAACATTTGTGAGCCA
CCTTTGGCAAAGTAGGAAGGAACAATTGGCCGTCGGTGGTCGGTCCTGTG
GGAACAACGCTCCGTCCTCTCGATGACGCGTGGTCAATGGTCTAACCGCT
AAGGCATGCAAAACATAAGAATACCCACCCCCTCCCCCAACCCCCGTTGG
TCCATTTTTCACAGCCGAGTGCGGCCAGAATCGATCCGACTGTTCGAGGC
GTCGGCGTCGCAATCGCACCACGGTGTTGCGTCGAGGGGGGTGTCGGGCG
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1395:11449..17349+

>mRNA_Ecto-sp13_S_contig1395.3084.1 ID=mRNA_Ecto-sp13_S_contig1395.3084.1|Name=mRNA_Ecto-sp13_S_contig1395.3084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1395:11449..17349+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTCGGCCCTACTAGGTGTGTGGAACGGCGACCCCAGGCTGCGCGAGG
GGACAGCGAGAGGGAGAAGGCGAGCGGTGTCCACGCGCGTCCGGGAGAGG
AAAATTGGCGGAGCGAGATGAAGCGAATATCGCTGCGTCGCGCCCTGTCT
TTGCGAGTCGGCGGCGGGGCAGAAGCCTCGCGGAATACGGAAGGTTATGA
GCTTAGCCCCCCACAGCAACAGCAACAGCAGCGGCAACCTCTAGCGCCGA
GGGAGGCTGCCGGCGAAGGCCCCGACGAGGGACACCGACAACAGCAGCAG
CAGCCTGCGATGCAGCAAGCGCCGACGAAGAAAGCGGAGATGATGAACAT
CGACGCCGTCAGCAGCAACGCGTACTCGGAGGGCAGGGGCGAGGACCCGG
ACATGCCGCCCCAGCTCGCCAAGCTCGGGGAGAATATGGACGTCCGAAGA
GATAGGCGTGTGCAGTCAAGCCGAGTGCGGCCAGAATCGATCCGACTGTT
CGAGGCGTCGGCGTCGCAATCGCACCACGGTGTTGCGTCGAGGGGGGTGT
CGGGC
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