mRNA_Ecto-sp13_S_contig13949.3082.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13949.3082.1
Unique NamemRNA_Ecto-sp13_S_contig13949.3082.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13949.3082.1 vs. uniprot
Match: A0A6H5KG62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG62_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 2.000e-105
Identity = 252/544 (46.32%), Postives = 265/544 (48.71%), Query Frame = 1 
Query:    1 MVISGHKNKPLFSQAAGSQKGQVDNCKPSAAAVAAVPQASASGPEPKVPPAASPSGAASGKLNQDNDVSIESSTAAAKGDGTSEVVAAAPTAGMPVSEEKPTRQNVASEESTSAVTTAVEEDPGQETVAAVQGRLSIMVVAANPRLQEVSALPRGAVVKAKLFVEEEEDESCAPETMEEDTTAAVDVAEGDYLAGTSV-----------------------------------DAPAAGGKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------PAHVVIPEEERQEEC------------------------------------------------------------------------------------------GRTNDEPMPSVLPQNERDVAPLLXXXXXXXXXXXXXXXXXXEADIAPVPQGCVVVTENARRVVGEPGAAGKLEAAADVELGKERAVAVPGHAGLVVDEETRSFVEGSKYLRFEDDERTVLCTLTDKKLAPDYIGILNYMGSRRVQQLVVEGPVSVS 1239
            MVISGHKNKPLFS AAGSQKGQVDNCK SAAAVAAVPQASAS PEPKV P ASPSG+A GKLNQD+ VS+ESST                                                                VVAANPRLQ VSALPR  VV+AKLFVEEE+DESCAPETMEE TTAAVDV EGD LAGTSV                                   D P+AG K+                                         PA  +  EEERQ E                                                                                            RTNDEPMPSVL QNERDV PLL                  +AD APVPQGC VVTENA RVVGEPG++ KLEAAADV LG+ERAVAVPGHAGLVVDEETRS VEGSKYLRFEDDERTVLCTLT KKLAPDYIGILNYMGSRRVQQLVVEGPVS+S
Sbjct:    1 MVISGHKNKPLFSPAAGSQKGQVDNCKSSAAAVAAVPQASASAPEPKVSPPASPSGSAGGKLNQDDHVSVESSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXVVAANPRLQGVSALPRETVVQAKLFVEEEDDESCAPETMEEGTTAAVDVTEGDDLAGTSVVTPAXXXXXXXXXXXXXXXXXXENMAADGQPADVVDLPSAGMKQDESVVTIMTIPEKENHVTLGASAAIAVSTEPAHMEEEGDENPASCLRSEEERQGETRPEGAVVASDEGHDEQQQVNEAGACTADPAKQRSGDAQEVPQVVMQPASGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRTNDEPMPSVLLQNERDVVPLLPPQEEDPEASVMPSQPEDDADTAPVPQGCAVVTENAPRVVGEPGSSRKLEAAADVGLGEERAVAVPGHAGLVVDEETRSLVEGSKYLRFEDDERTVLCTLTGKKLAPDYIGILNYMGSRRVQQLVVEGPVSMS 543
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BLAST of mRNA_Ecto-sp13_S_contig13949.3082.1 vs. uniprot
Match: D7G929_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G929_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 1.340e-80
Identity = 153/171 (89.47%), Postives = 158/171 (92.40%), Query Frame = 1 
Query:  775 RTNDEPMPSVLPQNERDVAPLLXXXXXXXXXXXXXXXXXXEADIAPVPQGCVVVTENARRVVGEPGAAGKLEAAADVELGKERAVAVPGHAGLVVDEETRSFVEGSKYLRFEDDERTVLCTLTDKKLAPDYIGILNYMGSRRVQQLVVEGPVSVSDLGKKGTPGGQTDQWK 1287
            RTND+PMPSVLPQNE D+APL XXXXXXXXXXXXXXXXX EADIAPV QGC VVTENA RV GEPGAAGKLEAAADV  G+ER VAVPGHAGLVVDEETRS VEGSKYLRFEDDERTVLCTLT KKLAPDYIGIL YMGSRRVQQLVVEGPVS+SDLGK+GTPGGQTDQWK
Sbjct:  152 RTNDDPMPSVLPQNEGDLAPLXXXXXXXXXXXXXXXXXXAEADIAPVSQGCAVVTENAPRVAGEPGAAGKLEAAADVGFGEERTVAVPGHAGLVVDEETRSLVEGSKYLRFEDDERTVLCTLTGKKLAPDYIGILKYMGSRRVQQLVVEGPVSMSDLGKQGTPGGQTDQWK 322
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13949.3082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG62_9PHAE2.000e-10546.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G929_ECTSI1.340e-8089.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13949contigEcto-sp13_S_contig13949:2445..3918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1290
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002110.1
Cds size1290
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462744.405969-CDS-Ecto-sp13_S_contig13949:2444..24951681462744.405969-CDS-Ecto-sp13_S_contig13949:2444..2495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13949 2445..2495 -
1681462744.4144056-CDS-Ecto-sp13_S_contig13949:2679..39181681462744.4144056-CDS-Ecto-sp13_S_contig13949:2679..3918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13949 2680..3918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13949.3082.1prot_Ecto-sp13_S_contig13949.3082.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13949 2445..3918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13949.3082.1

>prot_Ecto-sp13_S_contig13949.3082.1 ID=prot_Ecto-sp13_S_contig13949.3082.1|Name=mRNA_Ecto-sp13_S_contig13949.3082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=430bp
MVISGHKNKPLFSQAAGSQKGQVDNCKPSAAAVAAVPQASASGPEPKVPP
AASPSGAASGKLNQDNDVSIESSTAAAKGDGTSEVVAAAPTAGMPVSEEK
PTRQNVASEESTSAVTTAVEEDPGQETVAAVQGRLSIMVVAANPRLQEVS
ALPRGAVVKAKLFVEEEEDESCAPETMEEDTTAAVDVAEGDYLAGTSVDA
PAAGGKEGSEQQQQQQKDDEQQQHVVLVQEIDAASDTTQSASPAHVVIPE
EERQEECGRTNDEPMPSVLPQNERDVAPLLPPQEEDPEASVMPSQPEDEA
DIAPVPQGCVVVTENARRVVGEPGAAGKLEAAADVELGKERAVAVPGHAG
LVVDEETRSFVEGSKYLRFEDDERTVLCTLTDKKLAPDYIGILNYMGSRR
VQQLVVEGPVSVSDLGKKGTPGGQTDQWK*
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mRNA from alignment at Ecto-sp13_S_contig13949:2445..3918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13949.3082.1 ID=mRNA_Ecto-sp13_S_contig13949.3082.1|Name=mRNA_Ecto-sp13_S_contig13949.3082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13949:2445..3918- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATCTCGGGTCACAAGAACAAGCCTCTTTTCAGTCAAGCCGCCGG
TTCCCAGAAGGGACAGGTCGACAACTGCAAGCCCTCGGCTGCTGCCGTTG
CTGCTGTCCCGCAAGCATCAGCGTCTGGCCCCGAGCCGAAGGTTCCGCCG
GCTGCGTCGCCGTCTGGTGCAGCTAGTGGCAAGCTCAACCAGGACAACGA
TGTCTCGATCGAATCATCGACGGCGGCGGCCAAGGGGGATGGCACGAGCG
AAGTTGTCGCTGCTGCACCTACTGCTGGCATGCCGGTCTCTGAAGAAAAG
CCGACGAGACAAAATGTCGCCTCCGAAGAGAGCACATCGGCGGTAACAAC
AGCAGTGGAGGAGGATCCGGGGCAAGAGACGGTGGCGGCAGTACAAGGGC
GACTAAGCATTATGGTGGTGGCGGCGAACCCTCGTCTTCAAGAGGTGTCT
GCTCTGCCGCGGGGAGCAGTCGTGAAGGCAAAGCTCTTCGTCGAGGAGGA
GGAAGATGAGTCGTGCGCGCCGGAAACGATGGAGGAAGACACTACTGCTG
CTGTGGACGTTGCGGAAGGTGATTATCTCGCTGGAACTTCTGTCGATGCT
CCTGCTGCTGGGGGCAAGGAGGGCTCAGAGCAGCAGCAGCAGCAGCAGAA
GGATGATGAACAACAGCAACACGTGGTTCTGGTTCAAGAAATTGATGCTG
CTTCCGATACCACTCAGTCGGCTTCTCCCGCTCATGTCGTGATACCGGAG
GAGGAGCGACAAGAAGAATGTGGTCGTACAAACGATGAGCCGATGCCGTC
TGTGCTTCCGCAGAACGAACGTGACGTCGCTCCGCTCTTGCCACCGCAGG
AGGAGGACCCCGAGGCGTCGGTGATGCCGTCGCAGCCTGAGGACGAAGCC
GACATCGCTCCGGTGCCACAGGGATGCGTTGTCGTGACAGAGAACGCGCG
CCGCGTGGTCGGGGAGCCTGGAGCTGCGGGAAAACTAGAGGCGGCGGCGG
ACGTCGAGCTCGGCAAGGAGAGGGCCGTCGCCGTGCCGGGGCATGCCGGG
TTGGTCGTGGACGAAGAAACCAGGAGTTTCGTGGAGGGAAGCAAGTACCT
TCGGTTCGAGGACGACGAGAGGACCGTGCTGTGCACCCTCACGGACAAGA
AGCTGGCCCCAGATTACATAGGCATCCTGAACTACATGGGCAGCAGGAGG
GTGCAGCAGCTCGTCGTTGAAGGACCCGTATCCGTGTCGGTAAGCCCCTA
AGTCTCTGTGTTGTGTTGTCGCCTGTGGTGTGGAGCCGAATGCTGACGCA
AGCGCGGGCGGTGGAGCAGGTGCGTTCATTCTTTCTTTCTTTTTTCGTGC
GATGGTGGATGGAAACCAATCAAAGCCGGGCCTTGACCGGGGGCGAGGGC
CTTTTTACATAGTGTCACAGCAGGACTTGGGAAAGAAAGGAACACCTGGA
GGGCAAACCGACCAGTGGAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13949:2445..3918-

>mRNA_Ecto-sp13_S_contig13949.3082.1 ID=mRNA_Ecto-sp13_S_contig13949.3082.1|Name=mRNA_Ecto-sp13_S_contig13949.3082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13949:2445..3918- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATCTCGGGTCACAAGAACAAGCCTCTTTTCAGTCAAGCCGCCGG
TTCCCAGAAGGGACAGGTCGACAACTGCAAGCCCTCGGCTGCTGCCGTTG
CTGCTGTCCCGCAAGCATCAGCGTCTGGCCCCGAGCCGAAGGTTCCGCCG
GCTGCGTCGCCGTCTGGTGCAGCTAGTGGCAAGCTCAACCAGGACAACGA
TGTCTCGATCGAATCATCGACGGCGGCGGCCAAGGGGGATGGCACGAGCG
AAGTTGTCGCTGCTGCACCTACTGCTGGCATGCCGGTCTCTGAAGAAAAG
CCGACGAGACAAAATGTCGCCTCCGAAGAGAGCACATCGGCGGTAACAAC
AGCAGTGGAGGAGGATCCGGGGCAAGAGACGGTGGCGGCAGTACAAGGGC
GACTAAGCATTATGGTGGTGGCGGCGAACCCTCGTCTTCAAGAGGTGTCT
GCTCTGCCGCGGGGAGCAGTCGTGAAGGCAAAGCTCTTCGTCGAGGAGGA
GGAAGATGAGTCGTGCGCGCCGGAAACGATGGAGGAAGACACTACTGCTG
CTGTGGACGTTGCGGAAGGTGATTATCTCGCTGGAACTTCTGTCGATGCT
CCTGCTGCTGGGGGCAAGGAGGGCTCAGAGCAGCAGCAGCAGCAGCAGAA
GGATGATGAACAACAGCAACACGTGGTTCTGGTTCAAGAAATTGATGCTG
CTTCCGATACCACTCAGTCGGCTTCTCCCGCTCATGTCGTGATACCGGAG
GAGGAGCGACAAGAAGAATGTGGTCGTACAAACGATGAGCCGATGCCGTC
TGTGCTTCCGCAGAACGAACGTGACGTCGCTCCGCTCTTGCCACCGCAGG
AGGAGGACCCCGAGGCGTCGGTGATGCCGTCGCAGCCTGAGGACGAAGCC
GACATCGCTCCGGTGCCACAGGGATGCGTTGTCGTGACAGAGAACGCGCG
CCGCGTGGTCGGGGAGCCTGGAGCTGCGGGAAAACTAGAGGCGGCGGCGG
ACGTCGAGCTCGGCAAGGAGAGGGCCGTCGCCGTGCCGGGGCATGCCGGG
TTGGTCGTGGACGAAGAAACCAGGAGTTTCGTGGAGGGAAGCAAGTACCT
TCGGTTCGAGGACGACGAGAGGACCGTGCTGTGCACCCTCACGGACAAGA
AGCTGGCCCCAGATTACATAGGCATCCTGAACTACATGGGCAGCAGGAGG
GTGCAGCAGCTCGTCGTTGAAGGACCCGTATCCGTGTCGGACTTGGGAAA
GAAAGGAACACCTGGAGGGCAAACCGACCAGTGGAAATGA
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