mRNA_Ecto-sp13_S_contig13934.3074.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13934.3074.1
Unique NamemRNA_Ecto-sp13_S_contig13934.3074.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: D8LEH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH2_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.380e-32
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV
Sbjct:  162 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 219
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: W7TLJ5_9STRA (Putative oxidoreductase yrbe n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLJ5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.120e-18
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RR D +Y QL   V++G +G +RSV A+FRDHPVPS+EFL+ GGDIFHDL  HD DF+
Sbjct:  129 RRIDPSYVQLLQTVKEGKIGDIRSVRAVFRDHPVPSLEFLRLGGDIFHDLVVHDADFI 186
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: A0A7S1FLI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FLI6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.760e-17
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RR D  Y +L  AV +G +G VRSV A+FRDHPVP + FLK+GGDIFHDLA HD D++
Sbjct:  159 RRFDDGYRELREAVVRGEIGTVRSVAAVFRDHPVPPVAFLKEGGDIFHDLAVHDVDYI 216
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: A0A7S2BJN3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJN3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.810e-17
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RRTD  Y+ +AA V  G +GA+ S+HAIFRDHP P ++FL  GGD+FHDLA HD DF+
Sbjct:   75 RRTDPAYQAVAAEVAAGNLGAITSIHAIFRDHPCPPMKFLLAGGDVFHDLATHDIDFI 132
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: A0A7R9U697_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U697_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RR D TY+ +A  V  GA+G V+ +HA+FRDHP P ++FLK+GGD FHDL  HD D++
Sbjct:  130 RRFDPTYQDVATHVASGAIGTVKKIHAVFRDHPCPDLDFLKRGGDPFHDLLVHDIDYI 187
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: A0A1V9YYV7_9STRA (Oxidoreductase family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYV7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RR D  Y  L  AV+  A+G V+SVH +FRDHP P +EFLK GGD FHDLA HD DFV
Sbjct:  180 RRFDPNYAALYEAVQANAIGPVQSVHTVFRDHPCPPVEFLKGGGDPFHDLAVHDIDFV 237
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: A0A024U6V7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6V7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.040e-14
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RR D  Y  L  A+   ++GAV+S+  +FRDHP P IEFLK GGD FHDLA HD DFV
Sbjct:  125 RRFDPHYVALRDAITSNSIGAVQSIQTVFRDHPCPPIEFLKSGGDPFHDLAVHDIDFV 182
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: A0A1W0A6U0_9STRA (Oxidoreductase family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6U0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.090e-14
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RR D  Y  L  AV   A+G V+S+  +FRDHP P++EFLK GGD FHDLA HD DFV
Sbjct:  554 RRFDPNYAALYDAVEGNAIGQVQSIQTVFRDHPTPAVEFLKGGGDPFHDLAVHDIDFV 611
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: W4HAI4_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAI4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.900e-14
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RR D  Y  L  A+   ++GA++S+  +FRDHP P +EFLK GGD FHDLA HD DFV
Sbjct:  125 RRFDPHYAALRDAITSNSIGAIQSIQTVFRDHPCPPVEFLKAGGDPFHDLAVHDIDFV 182
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BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Match: A0A6A4ZPM1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZPM1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.240e-14
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 RRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHDLAPHDCDFV 177
            RR D  Y  L  A+   ++GA++S+  +FRDHP P +EFLK GGD FHDLA HD DFV
Sbjct:  121 RRFDPHYAALRDAITSNSIGAIQSIQTVFRDHPCPPVEFLKAGGDPFHDLAVHDIDFV 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13934.3074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH2_ECTSI2.380e-32100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TLJ5_9STRA8.120e-1862.07Putative oxidoreductase yrbe n=2 Tax=Monodopsidace... [more]
A0A7S1FLI6_9STRA3.760e-1762.07Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2BJN3_9STRA3.810e-1760.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9U697_9STRA3.770e-1655.17Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1V9YYV7_9STRA1.500e-1562.07Oxidoreductase family n=1 Tax=Achlya hypogyna TaxI... [more]
A0A024U6V7_9STRA2.040e-1458.62Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1W0A6U0_9STRA3.090e-1458.62Oxidoreductase family n=1 Tax=Thraustotheca clavat... [more]
W4HAI4_9STRA3.900e-1455.17Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A6A4ZPM1_9STRA4.240e-1455.17Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13934contigEcto-sp13_S_contig13934:3895..4555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score123.6
Seed ortholog evalue3e-26
Seed eggNOG ortholog2880.D8LEH2
Model size177
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.D-xylose 1-dehydrogenase (NADP ) activity
EggNOG OGsCOG0673@1,KOG2741@2759
EC1.1.1.18,1.1.1.369
Cds size177
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.816382-CDS-Ecto-sp13_S_contig13934:3894..39421681462743.816382-CDS-Ecto-sp13_S_contig13934:3894..3942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13934 3895..3942 -
1681462743.831102-CDS-Ecto-sp13_S_contig13934:4426..45551681462743.831102-CDS-Ecto-sp13_S_contig13934:4426..4555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13934 4427..4555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13934.3074.1prot_Ecto-sp13_S_contig13934.3074.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13934 3895..4555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13934.3074.1

>prot_Ecto-sp13_S_contig13934.3074.1 ID=prot_Ecto-sp13_S_contig13934.3074.1|Name=mRNA_Ecto-sp13_S_contig13934.3074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
RRRTDRTYEQLAAAVRKGAVGAVRSVHAIFRDHPVPSIEFLKQGGDIFHD
LAPHDCDFV
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mRNA from alignment at Ecto-sp13_S_contig13934:3895..4555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13934.3074.1 ID=mRNA_Ecto-sp13_S_contig13934.3074.1|Name=mRNA_Ecto-sp13_S_contig13934.3074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13934:3895..4555- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGCGAACAGATCGGACGTACGAACAGCTTGCCGCCGCCGTTCGGAA
GGGTGCTGTCGGCGCCGTGCGGTCCGTCCACGCCATCTTCAGGGACCACC
CGGTGCCGTCCATAGAGTTTTTGAAGCAGGTACGGTGTACTTCTAACCTC
CCCTCCCCCCCCTGTCGTCCTTCTGCTAGACTAACCATCCGTAGGCATTT
TCTTTGTTCGGAAGGTTACGGTTGCCCCCGCCACGCTGCTGCTACGAGTG
CGCGCTGCCGTCACCTACTCTGTGCACAGATTCATTGATTGGCGTCTTGT
TGGTGTGGGGCGTGAGAAACCGGCGACGTGGTACCCCATGCGGTCGCAGA
GAGCTACACAAGGCATTGTTTTGGCCTTATCGCTATCTTCGTCGTCGTCG
TCGTAGTCGTCGTCGTTTCCGCGAAAATCAACCCGAACGGGAACTCCGGG
TCGTCCGTCTTCTGGCTCCCGCCCCCGCCACTACCATTGGGACTCTCTAC
CTGTACGTCTAACCGCCAGTGCTTATCTCTACTCTATCCGCCGGCGCCAC
TGCCCTCGATGCTTGCACAACGTGCCCATGGATCGGCTGTCATTTGGTGA
TGCCTCGTCGAAGGGAGGCGACATCTTTCACGACCTCGCGCCGCACGATT
GCGACTTCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13934:3895..4555-

>mRNA_Ecto-sp13_S_contig13934.3074.1 ID=mRNA_Ecto-sp13_S_contig13934.3074.1|Name=mRNA_Ecto-sp13_S_contig13934.3074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13934:3895..4555- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGCGAACAGATCGGACGTACGAACAGCTTGCCGCCGCCGTTCGGAA
GGGTGCTGTCGGCGCCGTGCGGTCCGTCCACGCCATCTTCAGGGACCACC
CGGTGCCGTCCATAGAGTTTTTGAAGCAGGGAGGCGACATCTTTCACGAC
CTCGCGCCGCACGATTGCGACTTCGTC
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