prot_Ecto-sp13_S_contig1393.3070.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1393.3070.1
Unique Nameprot_Ecto-sp13_S_contig1393.3070.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length610
Homology
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: D8LHR0_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR0_ECTSI)

HSP 1 Score: 793 bits (2049), Expect = 1.750e-276
Identity = 429/526 (81.56%), Postives = 447/526 (84.98%), Query Frame = 0
Query:   21 GGGGTGDSEPGGFYDNP-DLRPHRQRDLFGSDAGAYSCGVDSATDGCSCDCCDKRASAERDFCPEHRANRVEYDRSDTFTXXXXXXXXXXXXXXXXXXXXXXXXXSGDDNADGEPTPTLSPQEGEETPGPTVVSSWAGANSFYLALRGVWTDASYSLYLEEGDVETAVVTGATKETLGTVTHTFTAKDGCYRLEVYSSGDPTLPNWDVVGGDAYGGTGDTSGAGLDGVTFTVGGGVCGVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVCSEDEEEGLGEFQQARWRAGCAPEALCGVDIEGGADGLDVEYHVEVKALLEAPVTTLTSSAAGVGDPDEEFELAVALWLGVDQGDVAVTVKDGFEMEXXXXXXXXXXXV-ASRRRGLQTDNSETPTSYTRYSARVQPANLTATEATELVETAAAGADGSDNDLQSWLWESGGSWSEVSVSTLEVEVVEELNVLTSDSAGVVSDASEESDEGGDMDDPLIIGGIVAGAVVVVGLVTLALCRSKKASKKS 544
            GG  TG + PGG Y+NP    P  +RDLFG DAGAYSCG+DSAT GCSCDCCDKRASAE DF PE  A RVEYDRSD FT                         SGDDN D +P PT SPQ  EETPGPTVV SWAGANSFYLALRGVWTDASYSLYLEEGDVETAVVTGATKE LGTVTHTF AKDGCYRLEVYSSG+PTLP W VVGGDAYGGTGDTSGAGLDGVTFT GGGVCGVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVC EDEEEGLGEFQQ   RAGCAPEALC +DIEGG DGLDVEYHVEV+ALLEAPVTTLTSSAAGVG+P+EEFELAVALWLGVDQGDVAV VKDGFEME     XXXXXX  ASRRRGLQT NSETPT+YTRYSARVQPANLTATEATELVE AAAGADGSDNDLQSWLWESGGSW+EVSV TLEVEVVEELNVLTSDS+G  SDASE ++EGGD+DDPLIIGGI AGAVVVVGLV LALC S+KA+KKS
Sbjct:  249 GGEETGTASPGGCYNNPRPPPPTAKRDLFGGDAGAYSCGIDSATVGCSCDCCDKRASAEHDFFPERGAYRVEYDRSDAFTR------------------------SGDDNVDSQPAPTPSPQGVEETPGPTVVPSWAGANSFYLALRGVWTDASYSLYLEEGDVETAVVTGATKEALGTVTHTFAAKDGCYRLEVYSSGNPTLPEWHVVGGDAYGGTGDTSGAGLDGVTFTAGGGVCGVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVCPEDEEEGLGEFQQGCVRAGCAPEALCDLDIEGGGDGLDVEYHVEVRALLEAPVTTLTSSAAGVGNPEEEFELAVALWLGVDQGDVAVRVKDGFEMEEGEEVXXXXXXXXASRRRGLQTVNSETPTTYTRYSARVQPANLTATEATELVEIAAAGADGSDNDLQSWLWESGGSWTEVSVPTLEVEVVEELNVLTSDSSGDASDASEGAEEGGDLDDPLIIGGIAAGAVVVVGLVMLALCCSRKANKKS 750          
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: A0A6H5KPR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR5_9PHAE)

HSP 1 Score: 474 bits (1221), Expect = 2.260e-160
Identity = 284/412 (68.93%), Postives = 289/412 (70.15%), Query Frame = 0
Query:    1 MEPFFVRRRKALRLRDAFHGGGGGTGDSEPGGFYDNPDLRPHRQRDLFGSDAGAYSCGVDSATDGCSCDCCDKRASAERDFCPEHRANRVEYDRSDTFTXXXXXXXXXXXXXXXXXXXXXXXXX---SGDDNAD----------------------------------------------------------------------------------------------GEPTPTLSPQEGEETPGPTVVSSWAGANSFYLALRGVWTDASYSLYLEEGDVETAVVTGATKETLGTVTHTFTAKDGCYRLEVYSSGDPTLPNWDVVGGDAYGGTGDTSGAGLDGVTFTVGGGVCGVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVCSEDEEEGLGEFQQARWR 315
            MEPFFVRRRKA RLRDAFHGGGGG GDSEP G+YD PD RPHRQRDLFGSDAGAYSCG+DSATDGCSCDCCDKRASAE DF PEH A RVEYDRSD FTXXXXXXXXXXXXXXXXXXXXXXXX    +G                                                                                                   GEPTPTLSP+E  ETPGPTVV SWAGANSFYLALRGVWTDASYSLYLEEGDV+TAVV  ATKETLGT THTF AKDGCYRLEVYSSGDPTLP WDVVGGDAYGGTGDTSGAGLDGVTFTVGGGVC VSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVC EDEEEGLGEFQQARWR
Sbjct:    1 MEPFFVRRRKAFRLRDAFHGGGGGNGDSEPDGYYDIPDFRPHRQRDLFGSDAGAYSCGIDSATDGCSCDCCDKRASAEHDFFPEHGAYRVEYDRSDAFTXXXXXXXXXXXXXXXXXXXXXXXXRWPLAGQGRPSQSTRLSNRVSPFSAYTSLSALSFCFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPTPTLSPREVGETPGPTVVPSWAGANSFYLALRGVWTDASYSLYLEEGDVQTAVVIDATKETLGTATHTFAAKDGCYRLEVYSSGDPTLPTWDVVGGDAYGGTGDTSGAGLDGVTFTVGGGVCDVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVCPEDEEEGLGEFQQARWR 412          
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: A0A6H5KQV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV5_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 1.670e-78
Identity = 172/194 (88.66%), Postives = 179/194 (92.27%), Query Frame = 0
Query:  420 TPTSYTRYSARVQPANLTATEATELVETAAAGADGSDNDLQSWLWESGGSWSEVSVSTLEVEVVEELNVLTSDSAGVVSDASEESDEGGDMDDPLIIGGIVAGAVVVVGLVTLALCRSKKASKKSRGSHAASRGRRFDNGDARGYPSSGKDSRQXXXXXXXXXXXXXXX---VLRYADDDDKHILEYSGGSGGR 610
            TPT+YTRYSARVQPANLT TEATELVETAAAGADGSDNDLQSWLWESGGSWSEVSV+TLEVEVVEE NV TS S+GVVSDASE S+EGGD+DDPLIIGGIVAGAV+VVGLV LALCRSKKASKKSRGS AAS GRRFDNGDARG PSSGKDS+QXXXXXXXXXXXXXXX   VLR ADDD KH LEYSGGSGGR
Sbjct:    2 TPTNYTRYSARVQPANLTVTEATELVETAAAGADGSDNDLQSWLWESGGSWSEVSVTTLEVEVVEEFNVPTSASSGVVSDASEGSEEGGDVDDPLIIGGIVAGAVLVVGLVMLALCRSKKASKKSRGSQAASCGRRFDNGDARGNPSSGKDSKQXXXXXXXXXXXXXXXEELVLRNADDD-KHTLEYSGGSGGR 194          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHR0_ECTSI1.750e-27681.56C-type lectin domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KPR5_9PHAE2.260e-16068.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV5_9PHAE1.670e-7888.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 514..535
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..513
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 536..610
NoneNo IPR availableTMHMMTMhelixcoord: 513..535

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1393contigEcto-sp13_S_contig1393:6594..13134 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1393.3070.1mRNA_Ecto-sp13_S_contig1393.3070.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1393 6594..16571 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1393.3070.1 ID=prot_Ecto-sp13_S_contig1393.3070.1|Name=mRNA_Ecto-sp13_S_contig1393.3070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=610bp
MEPFFVRRRKALRLRDAFHGGGGGTGDSEPGGFYDNPDLRPHRQRDLFGS
DAGAYSCGVDSATDGCSCDCCDKRASAERDFCPEHRANRVEYDRSDTFTR
SDAFTRCDAFTRSDAFTRSDACTGSGDDNADGEPTPTLSPQEGEETPGPT
VVSSWAGANSFYLALRGVWTDASYSLYLEEGDVETAVVTGATKETLGTVT
HTFTAKDGCYRLEVYSSGDPTLPNWDVVGGDAYGGTGDTSGAGLDGVTFT
VGGGVCGVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVCSE
DEEEGLGEFQQARWRAGCAPEALCGVDIEGGADGLDVEYHVEVKALLEAP
VTTLTSSAAGVGDPDEEFELAVALWLGVDQGDVAVTVKDGFEMEEEEEEE
EEEEEVASRRRGLQTDNSETPTSYTRYSARVQPANLTATEATELVETAAA
GADGSDNDLQSWLWESGGSWSEVSVSTLEVEVVEELNVLTSDSAGVVSDA
SEESDEGGDMDDPLIIGGIVAGAVVVVGLVTLALCRSKKASKKSRGSHAA
SRGRRFDNGDARGYPSSGKDSRQQQQQRRGNTAGAEELVLRYADDDDKHI
LEYSGGSGGR
back to top