mRNA_Ecto-sp13_S_contig1393.3070.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: D8LHR0_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR0_ECTSI) HSP 1 Score: 793 bits (2049), Expect = 6.770e-273 Identity = 429/526 (81.56%), Postives = 447/526 (84.98%), Query Frame = 3
Query: 738 GGGGTGDSEPGGFYDNP-DLRPHRQRDLFGSDAGAYSCGVDSATDGCSCDCCDKRASAERDFCPEHRANRVEYDRSDTFTXXXXXXXXXXXXXXXXXXXXXXXXXSGDDNADGEPTPTLSPQEGEETPGPTVVSSWAGANSFYLALRGVWTDASYSLYLEEGDVETAVVTGATKETLGTVTHTFTAKDGCYRLEVYSSGDPTLPNWDVVGGDAYGGTGDTSGAGLDGVTFTVGGGVCGVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVCSEDEEEGLGEFQQARWRAGCAPEALCGVDIEGGADGLDVEYHVEVKALLEAPVTTLTSSAAGVGDPDEEFELAVALWLGVDQGDVAVTVKDGFEMEXXXXXXXXXXXV-ASRRRGLQTDNSETPTSYTRYSARVQPANLTATEATELVETAAAGADGSDNDLQSWLWESGGSWSEVSVSTLEVEVVEELNVLTSDSAGVVSDASEESDEGGDMDDPLIIGGIVAGAVVVVGLVTLALCRSKKASKKS 2309
GG TG + PGG Y+NP P +RDLFG DAGAYSCG+DSAT GCSCDCCDKRASAE DF PE A RVEYDRSD FT SGDDN D +P PT SPQ EETPGPTVV SWAGANSFYLALRGVWTDASYSLYLEEGDVETAVVTGATKE LGTVTHTF AKDGCYRLEVYSSG+PTLP W VVGGDAYGGTGDTSGAGLDGVTFT GGGVCGVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVC EDEEEGLGEFQQ RAGCAPEALC +DIEGG DGLDVEYHVEV+ALLEAPVTTLTSSAAGVG+P+EEFELAVALWLGVDQGDVAV VKDGFEME XXXXXX ASRRRGLQT NSETPT+YTRYSARVQPANLTATEATELVE AAAGADGSDNDLQSWLWESGGSW+EVSV TLEVEVVEELNVLTSDS+G SDASE ++EGGD+DDPLIIGGI AGAVVVVGLV LALC S+KA+KKS
Sbjct: 249 GGEETGTASPGGCYNNPRPPPPTAKRDLFGGDAGAYSCGIDSATVGCSCDCCDKRASAEHDFFPERGAYRVEYDRSDAFTR------------------------SGDDNVDSQPAPTPSPQGVEETPGPTVVPSWAGANSFYLALRGVWTDASYSLYLEEGDVETAVVTGATKEALGTVTHTFAAKDGCYRLEVYSSGNPTLPEWHVVGGDAYGGTGDTSGAGLDGVTFTAGGGVCGVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVCPEDEEEGLGEFQQGCVRAGCAPEALCDLDIEGGGDGLDVEYHVEVRALLEAPVTTLTSSAAGVGNPEEEFELAVALWLGVDQGDVAVRVKDGFEMEEGEEVXXXXXXXXASRRRGLQTVNSETPTTYTRYSARVQPANLTATEATELVEIAAAGADGSDNDLQSWLWESGGSWTEVSVPTLEVEVVEELNVLTSDSSGDASDASEGAEEGGDLDDPLIIGGIAAGAVVVVGLVMLALCCSRKANKKS 750
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: A0A6H5KPR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR5_9PHAE) HSP 1 Score: 473 bits (1217), Expect = 1.040e-156 Identity = 284/412 (68.93%), Postives = 289/412 (70.15%), Query Frame = 3
Query: 678 MEPFFVRRRKALRLRDAFHGGGGGTGDSEPGGFYDNPDLRPHRQRDLFGSDAGAYSCGVDSATDGCSCDCCDKRASAERDFCPEHRANRVEYDRSDTFTXXXXXXXXXXXXXXXXXXXXXXXXX---SGDDNAD----------------------------------------------------------------------------------------------GEPTPTLSPQEGEETPGPTVVSSWAGANSFYLALRGVWTDASYSLYLEEGDVETAVVTGATKETLGTVTHTFTAKDGCYRLEVYSSGDPTLPNWDVVGGDAYGGTGDTSGAGLDGVTFTVGGGVCGVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVCSEDEEEGLGEFQQARWR 1622
MEPFFVRRRKA RLRDAFHGGGGG GDSEP G+YD PD RPHRQRDLFGSDAGAYSCG+DSATDGCSCDCCDKRASAE DF PEH A RVEYDRSD FTXXXXXXXXXXXXXXXXXXXXXXXX +G GEPTPTLSP+E ETPGPTVV SWAGANSFYLALRGVWTDASYSLYLEEGDV+TAVV ATKETLGT THTF AKDGCYRLEVYSSGDPTLP WDVVGGDAYGGTGDTSGAGLDGVTFTVGGGVC VSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVC EDEEEGLGEFQQARWR
Sbjct: 1 MEPFFVRRRKAFRLRDAFHGGGGGNGDSEPDGYYDIPDFRPHRQRDLFGSDAGAYSCGIDSATDGCSCDCCDKRASAEHDFFPEHGAYRVEYDRSDAFTXXXXXXXXXXXXXXXXXXXXXXXXRWPLAGQGRPSQSTRLSNRVSPFSAYTSLSALSFCFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPTPTLSPREVGETPGPTVVPSWAGANSFYLALRGVWTDASYSLYLEEGDVQTAVVIDATKETLGTATHTFAAKDGCYRLEVYSSGDPTLPTWDVVGGDAYGGTGDTSGAGLDGVTFTVGGGVCDVSECQALCLSDLFGGSDGGQEASSTCDGYAALISGACGDVCPEDEEEGLGEFQQARWR 412
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: A0A6H5KQV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV5_9PHAE) HSP 1 Score: 272 bits (696), Expect = 2.130e-76 Identity = 172/194 (88.66%), Postives = 179/194 (92.27%), Query Frame = 3
Query: 1935 TPTSYTRYSARVQPANLTATEATELVETAAAGADGSDNDLQSWLWESGGSWSEVSVSTLEVEVVEELNVLTSDSAGVVSDASEESDEGGDMDDPLIIGGIVAGAVVVVGLVTLALCRSKKASKKSRGSHAASRGRRFDNGDARGYPSSGKDSRQXXXXXXXXXXXXXXX---VLRYADDDDKHILEYSGGSGGR 2507
TPT+YTRYSARVQPANLT TEATELVETAAAGADGSDNDLQSWLWESGGSWSEVSV+TLEVEVVEE NV TS S+GVVSDASE S+EGGD+DDPLIIGGIVAGAV+VVGLV LALCRSKKASKKSRGS AAS GRRFDNGDARG PSSGKDS+QXXXXXXXXXXXXXXX VLR ADDD KH LEYSGGSGGR
Sbjct: 2 TPTNYTRYSARVQPANLTVTEATELVETAAAGADGSDNDLQSWLWESGGSWSEVSVTTLEVEVVEEFNVPTSASSGVVSDASEGSEEGGDVDDPLIIGGIVAGAVLVVGLVMLALCRSKKASKKSRGSQAASCGRRFDNGDARGNPSSGKDSKQXXXXXXXXXXXXXXXEELVLRNADDD-KHTLEYSGGSGGR 194
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: D8LQ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ88_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 9.430e-16 Identity = 59/170 (34.71%), Postives = 81/170 (47.65%), Query Frame = 1
Query: 67 GGCWTQDDEVGGRVEETDGCQTCTIQEEAFS-------------EAVFPVMFPEELDPCPDDFDYTTLYEETYGGLSLVTAASLSSTGCPEG-------------WLYFEDTGNCYFKSPNTAKAENQAHAASICEEEGAWVIAIDSEAENEFLLHNMLFPGFFGETYTG 498
GGCW+ +EE GCQTC +Q + S +VF F ELDPCP+ + Y GG +V+ + S C WL FE++ CY KS A N A + C E GA +++++SEAEN+F+ HN+L+ GF GE YTG
Sbjct: 6 GGCWST------LIEEQSGCQTCIVQATSSSTTATDDPPASQWNSSVFSKFFEMELDPCPESV--SDFYGTPPGG--VVSYQEVLSADCRHSDDDNXXXXXXDSVWLAFENS--CYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG 163
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: A0A7J7Q9X4_9CHLO (C-type lectin domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q9X4_9CHLO) HSP 1 Score: 75.1 bits (183), Expect = 4.010e-10 Identity = 60/165 (36.36%), Postives = 74/165 (44.85%), Query Frame = 1
Query: 295 PEGWLYFEDTGNCYFKSP-NTAKAENQAHAASICE--EEGAWVIAIDSEAENEFLLHNMLFPGFFGETYTGMTKDS--------PSDEWKWPAESSDTAYDCLEDYSNWLE---GADIGCAAVFDGGQDGSCMEIFPYEPKGWNPFSCDVGKHYVCEMPSTAGGE 747
P GWLY CY+KS + + A + C GA ++ I E EF+ N+L+ GFFGETYT S P W P ES T DY N+ E G D + V CMEI P +PK +NPFSC V K Y+CE GE
Sbjct: 99 PSGWLYNPANNRCYYKSSYDRGISAGITDAINRCFTLHAGASILNIADAQEEEFVRLNLLYAGFFGETYTSCICPSATARGLQLPQAAWARP-ESVAT------DYHNFNEPGRGFDYYESEVV-------CMEILPNKPKYYNPFSCAVLKQYICERSVAQPGE 249
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: A0A7J7PFC2_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PFC2_9CHLO) HSP 1 Score: 63.2 bits (152), Expect = 1.970e-6 Identity = 58/182 (31.87%), Postives = 74/182 (40.66%), Query Frame = 1
Query: 295 PEGWLYFEDTGNCYFKSP-NTAKAENQAHAASICE--EEGAWVIAIDSEAENEFLLHNMLFPGFFGETYTGMTKDS------------PSD------EWKWPAESSDTAYDCL-------EDYSNWLE---GADIGCAAVFDGGQDGSCMEIFPYEPKGWNPFSCDVGKHYVCEMPSTAGGE 747
P GWLY CY+KS + + A + C GA ++ I E EF+ N+L+ GFFGETYT S P E P+ S + + DY N+ E G D V CMEI P +PK +NPFSC V K Y+CE GE
Sbjct: 107 PSGWLYNPANDRCYYKSSYDRGISAGITDAINRCFTLHAGASILNIADAQEEEFVRLNLLYAGFFGETYTFNALPSCVARPLQYMLRMPLQAHQVLVEAGMPSSMSHSVSGAVLHSAKQATDYHNFNEPGRGFDYYELEVV-------CMEILPNKPKYYNPFSCAVLKQYICERSVAQPGE 281
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: A0A210Q4S8_MIZYE (Low affinity immunoglobulin epsilon Fc receptor n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q4S8_MIZYE) HSP 1 Score: 57.0 bits (136), Expect = 1.010e-5 Identity = 43/161 (26.71%), Postives = 74/161 (45.96%), Query Frame = 1
Query: 253 LSLVTAASLSSTGCPEGWLYFEDTGNCYFKSPNTAKAENQAHAASI-CEEEGAWVIAIDSEAENEFLLHNMLFPGFFGET--YTGMTKDSPSDEWKWPAESSDTAYDCLEDYSNWLEGADIGCAAVFDGGQDGSCMEIFPYEPKGWNPFSCDVGKHYVCEM 726
+++ T + L+ CP+ W+ F+++ CY+ N HA+S C+ + + ++A+DS+AEN+FL+ M G T + G T W W + S +Y NW G + C+ + ++ WN FSC +YVCE+
Sbjct: 14 VAIATGSGLAE--CPDEWVSFQES--CYYFVNN----HTTWHASSAYCQSQQSEIVAVDSQAENDFLVRYMRRLGCAFNTLFWIGATDMITDGVWVWTSSLSPLSY------FNWGPNEPNGLT-------NEDCISV-THDSGTWNDFSCRAPLYYVCEL 152
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: UPI000529A3DF (CD209 antigen-like protein C n=1 Tax=Colius striatus TaxID=57412 RepID=UPI000529A3DF) HSP 1 Score: 58.9 bits (141), Expect = 1.460e-5 Identity = 47/168 (27.98%), Postives = 69/168 (41.07%), Query Frame = 1
Query: 232 YEETYGGLSLVTAASLSSTGCPEGWLYFEDTGNCYFKSPNTAKAENQAHAASICEEEGAWVIAIDSEAENEFLLHNMLFPGFFGETYTGMTKDSPSDEWKWP-AESSDTAYDCLEDYSNWLEGADIG---CAAVFDGGQDGSCMEIFPYEPKGWNPFSCDVGKHYVCE 723
YEE +L+ + L S C GW FE + CY S T + A IC ++GA ++ I+S+ E FL NM + + G+T + W W E S +Y ++ W E D C ++ G DG WN C H++CE
Sbjct: 168 YEELQDITALICRSDLDSKKCSAGWKIFEKS--CYSFSTETTSWRD---AKEICTDQGAHLVVINSDLEQNFLRENMNSSSTY---WLGVTDEQEEGNWVWTNGEHSSISY-----WNTWKEKRDKDQKDCGSI---GPDGI-----------WNDDRCSHSHHWICE 308
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Match: UPI000B45CEA2 (low affinity immunoglobulin epsilon Fc receptor-like isoform X1 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45CEA2) HSP 1 Score: 57.0 bits (136), Expect = 2.510e-5 Identity = 43/161 (26.71%), Postives = 74/161 (45.96%), Query Frame = 1
Query: 253 LSLVTAASLSSTGCPEGWLYFEDTGNCYFKSPNTAKAENQAHAASI-CEEEGAWVIAIDSEAENEFLLHNMLFPGFFGET--YTGMTKDSPSDEWKWPAESSDTAYDCLEDYSNWLEGADIGCAAVFDGGQDGSCMEIFPYEPKGWNPFSCDVGKHYVCEM 726
+++ T + L+ CP+ W+ F+++ CY+ N HA+S C+ + + ++A+DS+AEN+FL+ M G T + G T W W + S +Y NW G + C+ + ++ WN FSC +YVCE+
Sbjct: 14 VAIATGSGLAE--CPDEWVSFQES--CYYFVNN----HTTWHASSAYCQSQQSEIVAVDSQAENDFLVRYMRRLGCAFNTLFWIGATDMITDGVWVWTSSLSPLSY------FNWGPNEPNGLT-------NEDCISV-THDSGTWNDFSCRAPLYYVCEL 152 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1393.3070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1393.3070.1 >prot_Ecto-sp13_S_contig1393.3070.1 ID=prot_Ecto-sp13_S_contig1393.3070.1|Name=mRNA_Ecto-sp13_S_contig1393.3070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=610bp MEPFFVRRRKALRLRDAFHGGGGGTGDSEPGGFYDNPDLRPHRQRDLFGSback to top mRNA from alignment at Ecto-sp13_S_contig1393:6594..16571- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1393.3070.1 ID=mRNA_Ecto-sp13_S_contig1393.3070.1|Name=mRNA_Ecto-sp13_S_contig1393.3070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1393:6594..16571- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1393:6594..16571- >mRNA_Ecto-sp13_S_contig1393.3070.1 ID=mRNA_Ecto-sp13_S_contig1393.3070.1|Name=mRNA_Ecto-sp13_S_contig1393.3070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1830bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1393:6594..16571- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |