mRNA_Ecto-sp13_S_contig13929.3067.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13929.3067.1
Unique NamemRNA_Ecto-sp13_S_contig13929.3067.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13929.3067.1 vs. uniprot
Match: D7FN97_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN97_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.030e-14
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 2 
Query:    2 DEKDHLLDKATKQVSNMLMENLYHKFRETEQFKQIQEQLVSVE 130
            D+K+HLL+KATKQVSNML ENLYHKFRETEQFKQIQEQL SVE
Sbjct:  154 DDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVE 196
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BLAST of mRNA_Ecto-sp13_S_contig13929.3067.1 vs. uniprot
Match: A0A6H5JLE7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.430e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 2 
Query:    2 DEKDHLLDKATKQVSNMLMENLYHKFRETEQFKQIQEQLVSVE 130
            DEK HLLDKATKQVSNML ENLY KFRETEQFKQIQEQL SVE
Sbjct:  251 DEKVHLLDKATKQVSNMLRENLYLKFRETEQFKQIQEQLFSVE 293
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13929.3067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN97_ECTSI2.030e-1488.37RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLE7_9PHAE1.430e-1290.70RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13929contigEcto-sp13_S_contig13929:39..365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size327
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size102
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.2936068-UTR-Ecto-sp13_S_contig13929:38..871681462743.2936068-UTR-Ecto-sp13_S_contig13929:38..87Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13929 39..87 +
1681462743.314145-UTR-Ecto-sp13_S_contig13929:189..3651681462743.314145-UTR-Ecto-sp13_S_contig13929:189..365Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13929 190..365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.3040829-CDS-Ecto-sp13_S_contig13929:87..1891681462743.3040829-CDS-Ecto-sp13_S_contig13929:87..189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13929 88..189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13929.3067.1prot_Ecto-sp13_S_contig13929.3067.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13929 88..189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13929.3067.1

>prot_Ecto-sp13_S_contig13929.3067.1 ID=prot_Ecto-sp13_S_contig13929.3067.1|Name=mRNA_Ecto-sp13_S_contig13929.3067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MLMENLYHKFRETEQFKQIQEQLVSVEMQLEGA*
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mRNA from alignment at Ecto-sp13_S_contig13929:39..365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13929.3067.1 ID=mRNA_Ecto-sp13_S_contig13929.3067.1|Name=mRNA_Ecto-sp13_S_contig13929.3067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13929:39..365+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGATGAAAAAGATCACCTTCTGGACAAAGCGACGAAACAAGTCAGCAACA
TGTTGATGGAGAATCTCTATCACAAGTTCAGAGAAACAGAGCAGTTCAAG
CAGATTCAAGAACAACTGGTTTCGGTGGAAATGCAACTCGAAGGAGCCTA
GTGTGGTCGAACAGATATGGCGGTTGAGCCCGCCACGACGATCTTCTGAA
CACGGCACTCAGTTCCTGCATGTCGGTCGCATCATTCCCATGTTGTTATC
TGGAGCCTGAAGAATAAGTGAGCTTGCAAGTGGAATGTTTGTAGTATGAT
TCAATGTTTCTGCTGTCCGAACATGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13929:39..365+

>mRNA_Ecto-sp13_S_contig13929.3067.1 ID=mRNA_Ecto-sp13_S_contig13929.3067.1|Name=mRNA_Ecto-sp13_S_contig13929.3067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13929:39..365+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGATGGAGAATCTCTATCACAAGTTCAGAGAAACAGAGCAGTTCAA
GCAGATTCAAGAACAACTGGTTTCGGTGGAAATGCAACTCGAAGGAGCCT
AG
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