mRNA_Ecto-sp13_S_contig13926.3066.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13926.3066.1
Unique NamemRNA_Ecto-sp13_S_contig13926.3066.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13926.3066.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.990e-20
Identity = 56/72 (77.78%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:  217 EAKDAGSDQRQERRRQREETLAAQAFYAELLRLPGISSKKEARRMLKDAIPSMADVPSPPPXXXXXXXXKRG 432
            E KDAGSDQ       REETLAAQAFYAELLRLPG+SSKKEARRMLKDAIPSMADVPSPPP XX     K G
Sbjct: 1531 EPKDAGSDQXXXXXXXREETLAAQAFYAELLRLPGMSSKKEARRMLKDAIPSMADVPSPPPSXXSAALSKHG 1602
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13926.3066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV10_9PHAE6.990e-2077.78Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13926contigEcto-sp13_S_contig13926:589..1724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size500
Hectar predicted targeting categoryother localisation
Exons3
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.2446027-CDS-Ecto-sp13_S_contig13926:590..6221681462743.2446027-CDS-Ecto-sp13_S_contig13926:590..622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13926 591..622 -
1681462743.254648-CDS-Ecto-sp13_S_contig13926:634..8121681462743.254648-CDS-Ecto-sp13_S_contig13926:634..812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13926 635..812 -
1681462743.2676585-CDS-Ecto-sp13_S_contig13926:1436..17241681462743.2676585-CDS-Ecto-sp13_S_contig13926:1436..1724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13926 1437..1724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13926.3066.1prot_Ecto-sp13_S_contig13926.3066.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13926 591..1724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13926.3066.1

>prot_Ecto-sp13_S_contig13926.3066.1 ID=prot_Ecto-sp13_S_contig13926.3066.1|Name=mRNA_Ecto-sp13_S_contig13926.3066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
LRDEGLGLQSKATKQPAAGGSSSRSGSPTSAATAAAGATGTIKLKLVIGG
GGTGGGGGPATGDGGSSNGRGDEAKDAGSDQRQERRRQREETLAAQAFYA
ELLRLPGISSKKEARRMLKDAIPSMADVPSPPPSPSSAALSKRGREQGPA
EGSAEGSAERDPADSA
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mRNA from alignment at Ecto-sp13_S_contig13926:589..1724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13926.3066.1 ID=mRNA_Ecto-sp13_S_contig13926.3066.1|Name=mRNA_Ecto-sp13_S_contig13926.3066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1136bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13926:589..1724- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGAGAGACGAGGGCTTGGGGTTGCAATCCAAAGCTACCAAGCAGCCTGC
GGCGGGCGGCAGCTCCAGCCGCAGCGGCAGCCCAACCTCTGCGGCAACCG
CCGCCGCCGGTGCCACGGGTACGATCAAGCTCAAGCTGGTCATCGGCGGT
GGCGGCACCGGCGGTGGCGGCGGCCCGGCCACCGGGGACGGGGGGAGCTC
CAACGGGAGAGGCGACGAGGCTAAGGACGCCGGCTCTGATCAGAGGCAGG
AGCGGAGGCGGCAGCGGGAGGAGACCCTTGCCGCGCAGGTGTGTAGTGTG
TGTGTTTTTTTCTGTTGTTGTTTGCATCGATCGCGCTATCCGTCAGCTGA
TCGATGAAAAGACGCCAGTCTCAGTGCGGTTGAAAGAGGAAATGCTGTTT
TTTTTTCAGGCCATGATCTGGGCCATGATCTGGGACCTCGTGACGAGCTA
CTCTGCGGGTGTTGACAAAAACGGTAGTAACGGAAGAGAGCTGCAGTGTC
TACGGTGTGTGTGGATGCGAAACGGCGTACAGGTCGCGTTTTGCGTTTTG
GCAAAATAAATTTAGAGGAGGCAGCGATTTCGCGGCAGAGGGTTTTACTC
GATTTCCCTGTCTTAACTCTACAAACCGACCCGAATGGCGTTTGCCTTTT
CCATTTTTCCATATTCGAAGGTTCGTCACTCCATTATCTCTTCTCACAAC
CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCACCCCCTTTTTTCCGGCAC
CCCCCGCGCGCCCCCGCCAGATGTCCCAAAAAGGGGGGCGGGGGGGGCTC
CAAAACGGAAACCNNNNNNNNNNCCTTTTCCTTTTTTCCATTTTCTATGT
TTTTTCTCTCTTTTTTTTTTTTTCTCTTCCCCCTCCCTCCCCCCCCCTCC
CCTCCCCGAAAGGCTTTCTACGCGGAACTCCTGCGGCTGCCCGGCATATC
TTCCAAGAAGGAGGCCAGGCGGATGCTCAAAGACGCAATCCCGTCCATGG
CGGACGTTCCTTCGCCTCCGCCGAGCCCTTCCTCTGCGGCCTTGAGCAAG
CGCGGCCGAGAACAAGGTCCTGCGGAAGGTTCCGCGGAAGGTTCCGCGGA
AGGTTCCGCAGAGCGTGATCCCGCAGATAGTGCACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13926:589..1724-

>mRNA_Ecto-sp13_S_contig13926.3066.1 ID=mRNA_Ecto-sp13_S_contig13926.3066.1|Name=mRNA_Ecto-sp13_S_contig13926.3066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13926:589..1724- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGAGAGACGAGGGCTTGGGGTTGCAATCCAAAGCTACCAAGCAGCCTGC
GGCGGGCGGCAGCTCCAGCCGCAGCGGCAGCCCAACCTCTGCGGCAACCG
CCGCCGCCGGTGCCACGGGTACGATCAAGCTCAAGCTGGTCATCGGCGGT
GGCGGCACCGGCGGTGGCGGCGGCCCGGCCACCGGGGACGGGGGGAGCTC
CAACGGGAGAGGCGACGAGGCTAAGGACGCCGGCTCTGATCAGAGGCAGG
AGCGGAGGCGGCAGCGGGAGGAGACCCTTGCCGCGCAGGCTTTCTACGCG
GAACTCCTGCGGCTGCCCGGCATATCTTCCAAGAAGGAGGCCAGGCGGAT
GCTCAAAGACGCAATCCCGTCCATGGCGGACGTTCCTTCGCCTCCGCCGA
GCCCTTCCTCTGCGGCCTTGAGCAAGCGCGGCCGAGAACAAGGTCCTGCG
GAAGGTTCCGCGGAAGGTTCCGCAGAGCGTGATCCCGCAGATAGTGCA
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