mRNA_Ecto-sp13_S_contig13918.3060.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13918.3060.1
Unique NamemRNA_Ecto-sp13_S_contig13918.3060.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13918.3060.1 vs. uniprot
Match: D7FH36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH36_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.440e-35
Identity = 78/109 (71.56%), Postives = 81/109 (74.31%), Query Frame = 3 
Query:    9 SYSRCR-RRRRDGKQALREPSRPRDSLRLSRSAGDYKGQRGVFSRGWGGGVDVVGRLARGGPAGEAGRAEGGRXXXXXXXXG*VFVAKNLCGHVGQGKTQACEGGNNPS 332
            SYSRCR RR  DG+QALR P  P+DSLRLSRS   YKGQR VF RG GGGV VV RLARGGPAGE GRAEG R        G VF AKNLCGHV QGKTQAC+GGNN S
Sbjct:   12 SYSRCRWRRGGDGQQALRLPPGPQDSLRLSRSPRVYKGQRSVFRRGEGGGVGVVERLARGGPAGETGRAEGRRCGGGGG--GEVFAAKNLCGHVCQGKTQACKGGNNAS 118
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BLAST of mRNA_Ecto-sp13_S_contig13918.3060.1 vs. uniprot
Match: A0A6H5J9K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.280e-29
Identity = 69/86 (80.23%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 SRRAIPAA-GGGGGMGSRRSASLPGRGIACVSLGALGIIRGSAAFLAGGGAAGLTSWGALQEGAPQARQGGPRAXXXXXXXXAGGR 255
            SRRAIPAA GGGGGMGSRRSA LPGR IACVSLGALG IR SAAF AGG AA LTSWGALQEGAPQARQG PRA        AGGR
Sbjct:    9 SRRAIPAACGGGGGMGSRRSACLPGRRIACVSLGALGFIRSSAAFFAGGRAAELTSWGALQEGAPQARQGRPRAGEGAAAALAGGR 94
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BLAST of mRNA_Ecto-sp13_S_contig13918.3060.1 vs. uniprot
Match: D7FHT1_ECTSI (Alpha/beta hydrolase fold n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHT1_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.250e-13
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:  295 ARHRHVKAGITPPSEEDFIPYRSYGDPSKQPLVIVPGLDGATAFFSDVLPELTLN 459
            A+  H +AG   P +E FIP++ YGD +KQPLVIVPGLDG TAFFSD++PEL LN
Sbjct:   21 AKRNHERAGA--PRQEQFIPFKKYGDDTKQPLVIVPGLDGVTAFFSDIVPELALN 73
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BLAST of mRNA_Ecto-sp13_S_contig13918.3060.1 vs. uniprot
Match: A0A7S3UUZ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUZ2_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 2.790e-6
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  337 EEDFIPYRSYGDPSKQPLVIVPGLDGATAFFSDVLPELT 453
            E  F  Y+ YG+P   PL+I+PGLDG T+FFSDV+PE T
Sbjct:   25 EPHFEAYKQYGNPENPPLIIIPGLDGCTSFFSDVIPEFT 63
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BLAST of mRNA_Ecto-sp13_S_contig13918.3060.1 vs. uniprot
Match: A0A7S2XZC0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZC0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.710e-5
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:  346 FIPYRSYGDPSKQPLVIVPGLDGATAFFSDVLPELT 453
            F  ++ +GDPS  P+V++PGLDG T+FF+DV+PELT
Sbjct:   28 FERFKQFGDPSNPPVVLIPGLDGCTSFFADVIPELT 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13918.3060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FH36_ECTSI1.440e-3571.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9K3_9PHAE1.280e-2980.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHT1_ECTSI1.250e-1363.64Alpha/beta hydrolase fold n=2 Tax=Ectocarpus TaxID... [more]
A0A7S3UUZ2_HETAK2.790e-658.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZC0_9STRA1.710e-558.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13918contigEcto-sp13_S_contig13918:3135..4078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size462
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462742.7462528-CDS-Ecto-sp13_S_contig13918:3134..33021681462742.7462528-CDS-Ecto-sp13_S_contig13918:3134..3302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13918 3135..3302 -
1681462742.756433-CDS-Ecto-sp13_S_contig13918:3784..40781681462742.756433-CDS-Ecto-sp13_S_contig13918:3784..4078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13918 3785..4078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13918.3060.1prot_Ecto-sp13_S_contig13918.3060.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13918 3135..4078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13918.3060.1

>prot_Ecto-sp13_S_contig13918.3060.1 ID=prot_Ecto-sp13_S_contig13918.3060.1|Name=mRNA_Ecto-sp13_S_contig13918.3060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
SRRAIPAAGGGGGMGSRRSASLPGRGIACVSLGALGIIRGSAAFLAGGGA
AGLTSWGALQEGAPQARQGGPRAGGGAAAAGAGGRFLLPRTSVVTSVKAR
HRHVKAGITPPSEEDFIPYRSYGDPSKQPLVIVPGLDGATAFFSDVLPEL
TLNV
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mRNA from alignment at Ecto-sp13_S_contig13918:3135..4078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13918.3060.1 ID=mRNA_Ecto-sp13_S_contig13918.3060.1|Name=mRNA_Ecto-sp13_S_contig13918.3060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=944bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13918:3135..4078- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCGTAGAGCTATTCCCGCTGCAGGCGGAGGAGGAGGGATGGGAAGCAG
GCGCTCCGCGAGCCTTCCAGGCCGCGGGATAGCCTGCGTCTCTCTCGGAG
CGCTGGGGATTATAAGGGGCAGCGCGGCGTTTTTAGCAGGGGGTGGGGCG
GCGGGGTTGACGTCGTGGGGCGCCTTGCAAGAGGGGGCCCCGCAGGCGAG
GCAGGGCGGGCCGAGGGCGGGCGGGGGTGCGGCGGCGGCGGGGGCGGGGG
GTAGGTTTTTGTTGCCAAGAACCTCTGTGGTCACGTCGGTCAAGGTGATT
TTTTGTTTGGGTGTTTTGCATCGTGTTTGGTGCCACACTAATAACAAACA
TGATGATTGTCCTCTTCCTATTGGGCAAACGTTTTTTGTTTCTTTCGTGT
TTTTCGGCGCATTCCAATCGTAGGCCCGCCTGGTCTTTCATTGCTTCGAT
ATTATCTGGGACAGCCTGTATCCTCAGGAACCATCTCTTTTGTCTGCCAT
CATAACGGTATCATAAACAACAACAACAGCATTGCACGATTCTCGCTCCA
CGAACCCCAGACCTCCTTCCAATCACGTCCCGCACGCAGGACACCGCAGG
TCGAAGTCGTAAGATTCCGTACCCCCTGGATCGAATTTAGAAAATCTATT
GCTTCGCGACCAAGAGGACACCAAACGTAAATGACAATGCACATCGTCGG
AAAGCTCTCGACGAGACGTTCCCAACACTGCCATACTTCTATCAATTTTA
CACGTGTTAATACCGTTGAACCGCAGGCAAGACACAGGCATGTGAAGGCG
GGAATAACCCCTCCGTCTGAGGAGGATTTCATCCCCTACCGAAGCTACGG
AGACCCGTCGAAGCAGCCCCTGGTTATCGTGCCGGGTTTGGACGGAGCGA
CGGCGTTTTTTTCGGACGTTCTTCCGGAGCTGACCTTGAATGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13918:3135..4078-

>mRNA_Ecto-sp13_S_contig13918.3060.1 ID=mRNA_Ecto-sp13_S_contig13918.3060.1|Name=mRNA_Ecto-sp13_S_contig13918.3060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13918:3135..4078- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCGTAGAGCTATTCCCGCTGCAGGCGGAGGAGGAGGGATGGGAAGCAG
GCGCTCCGCGAGCCTTCCAGGCCGCGGGATAGCCTGCGTCTCTCTCGGAG
CGCTGGGGATTATAAGGGGCAGCGCGGCGTTTTTAGCAGGGGGTGGGGCG
GCGGGGTTGACGTCGTGGGGCGCCTTGCAAGAGGGGGCCCCGCAGGCGAG
GCAGGGCGGGCCGAGGGCGGGCGGGGGTGCGGCGGCGGCGGGGGCGGGGG
GTAGGTTTTTGTTGCCAAGAACCTCTGTGGTCACGTCGGTCAAGGCAAGA
CACAGGCATGTGAAGGCGGGAATAACCCCTCCGTCTGAGGAGGATTTCAT
CCCCTACCGAAGCTACGGAGACCCGTCGAAGCAGCCCCTGGTTATCGTGC
CGGGTTTGGACGGAGCGACGGCGTTTTTTTCGGACGTTCTTCCGGAGCTG
ACCTTGAATGTG
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