mRNA_Ecto-sp13_S_contig13917.3059.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13917.3059.1
Unique NamemRNA_Ecto-sp13_S_contig13917.3059.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: D7FZN1_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN1_ECTSI)

HSP 1 Score: 499 bits (1285), Expect = 5.800e-169
Identity = 264/301 (87.71%), Postives = 269/301 (89.37%), Query Frame = 1
Query:  271 RGRPVVPTRTLAVGDESAALGKTAGASAEGLLGVEDAREALRSLFGHDDFRDGQ--------------------------EEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHQQQGSGT 1095
            +GR +V TRTLAVGDESAA GKT GASAEGLLG+EDAREALRSLFGHDDFRDGQ                          EEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKG+KVALFVVDEAHCISEWGHNFRPDYLRLADFA+AARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEH QQG GT
Sbjct:    9 KGRLIVSTRTLAVGDESAAPGKTEGASAEGLLGMEDAREALRSLFGHDDFRDGQAKDQHSRRWYALVYKPGLSFQTSTKEEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHHQQGRGT 309          
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A6H5JUW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW0_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 2.850e-110
Identity = 197/281 (70.11%), Postives = 200/281 (71.17%), Query Frame = 1
Query:  481 FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQT-------------------------------------------DALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISE---------------------------------WGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHQQQGSGT 1095
            FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQ                                            D L  AGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTL+GVKVALFVVDEAHCISE                                 WGHNFRPDYLRLADFA+AARANARLALTA ATP+VAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHQQQGSGT
Sbjct:   39 FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQVWYMLLNHNLFSLLSARQDIALCRGQLTVLVLLWMGLGTIAGVKDKLGPAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLQGVKVALFVVDEAHCISEGRVCCGAQRQMPLPVEAKRTSTEPVLHLLVSPQWGHNFRPDYLRLADFAKAARANARLALTAAATPQVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHQQQGSGT 319          
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A835Z8G9_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G9_9STRA)

HSP 1 Score: 265 bits (677), Expect = 5.820e-78
Identity = 148/264 (56.06%), Postives = 167/264 (63.26%), Query Frame = 1
Query:  376 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGV------------------------------------KVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADIL 1059
            D   AL+  FG+D+FRDGQEEVV  LL   S A + PTGAGKS+CYQLPG ++AR G G T+VVSPLIALMKDQ  AL A G+PCA+LDS+L+A    D Y+ +R G   LLYVSPERFNNERF    KG                                     +VALFVVDEAHCISEWGHNFRPDYLRLA FARAA A A LALTATATP+VA D+  RL I   +V RTP +R  L L A RAPD  EER   LA  L
Sbjct:   50 DVHAALKYYFGYDEFRDGQEEVVRLLLQQRSAAAILPTGAGKSLCYQLPGLVLARAGRGTTVVVSPLIALMKDQAQALAARGLPCARLDSSLDAAVARDAYDMVRRGRAGLLYVSPERFNNERFASAFKGALVHFARWAQLRTVERRGAAARARISSEAGLGALSKARVALFVVDEAHCISEWGHNFRPDYLRLAAFARAAGAAATLALTATATPRVAADMCARLAIAQHDVVRTPLHRAELALRAARAPDALEERVAALAARL 313          
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: X0SQ01_9ZZZZ (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0SQ01_9ZZZZ)

HSP 1 Score: 237 bits (605), Expect = 6.230e-73
Identity = 128/232 (55.17%), Postives = 159/232 (68.53%), Query Frame = 1
Query:  373 EDAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRG 1068
            E AR+ L+ +FG + FRDGQE VV +LL+G S   +FPTG GKS+CYQLP  ++     GLTLV+SPLIALMKDQ D L++ G P A+LDS+L   E   +++ + AG + LLYVSPER  NERF+R+L   K+AL  VDEAHCISEWGHNFRPDYL++A+ AR       LALTATATP+VA DIA    I P +V  T FYRP LTL    +P +  ER     D+LL G
Sbjct:   14 EHARKTLKEVFGFEGFRDGQEAVVMRLLSGRSVLAIFPTGGGKSLCYQLPSLVLD----GLTLVISPLIALMKDQLDFLVSRGAPAARLDSSLSREETLAVHDAMNAGRLKLLYVSPERLGNERFLRSLARRKIALLAVDEAHCISEWGHNFRPDYLKIAEIARQLGVERVLALTATATPQVAGDIAQGFGIAPGDVVNTGFYRPNLTLYV--SPCEAAERD----DLLLAG 235          
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A432UW22_9GAMM (RecQ family ATP-dependent DNA helicase n=1 Tax=Thiothrix sp. TaxID=1032 RepID=A0A432UW22_9GAMM)

HSP 1 Score: 241 bits (614), Expect = 2.790e-70
Identity = 133/231 (57.58%), Postives = 159/231 (68.83%), Query Frame = 1
Query:  376 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERAR-LLADILLR 1065
            D   AL+  FG D FR GQ EV+  LLAG S A VFPTGAGKS+CYQLP  L+     G+TLVVSPLIALMKDQ DAL A G+   +LDSTL+A    ++  Q+R G + +LYV+PERFNNERF   ++G++++LF VDEAHCISEWGHNFRPDYL+LA +AR   A   LALTATAT +V  DI    DI P    RT FYRP LTL  +  P ++ ER   LLA IL R
Sbjct:    4 DFESALKQHFGFDTFRPGQLEVMEHLLAGNSAAAVFPTGAGKSLCYQLPALLLP----GVTLVVSPLIALMKDQIDALAARGIAARQLDSTLDAQTYREVMTQVRGGELRMLYVAPERFNNERFREAIRGIQISLFAVDEAHCISEWGHNFRPDYLKLAGYAREFSAERVLALTATATEQVLEDIRAGFDISPDCAVRTGFYRPNLTL--LMTPVNEGERDEYLLAQILER 228          
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A3D2Z062_9BACT (RecQ family ATP-dependent DNA helicase n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D2Z062_9BACT)

HSP 1 Score: 240 bits (612), Expect = 5.060e-70
Identity = 129/228 (56.58%), Postives = 157/228 (68.86%), Query Frame = 1
Query:  376 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADIL 1059
            D R  L+  FG DDF  GQ +VV +LLAG S A VFPTG GKS+CYQLP  ++     GLTLVVSPLIALMKDQ DAL   G+  A+LDS+L+  +   + + IR+G + LLYV+PERFNNERF + ++G+ ++LF VDEAHCISEWGHNFRPDYL+LA FAR  +A   LALTATATP+V  DI    DI P +  RT FYRP L L +   P    ER   L D+L
Sbjct:    4 DPRMTLKQQFGFDDFLPGQADVVERLLAGHSTAAVFPTGGGKSLCYQLPSLMLP----GLTLVVSPLIALMKDQIDALQRRGITAARLDSSLDKDQYRSVMDGIRSGQLRLLYVAPERFNNERFRQAIEGIAISLFAVDEAHCISEWGHNFRPDYLKLAGFARQFQAERILALTATATPRVLDDICAGFDIHPEHAVRTGFYRPNLLLRST--PVRVAERDGALLDVL 225          
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A833IRD6_9GAMM (RecQ family ATP-dependent DNA helicase n=1 Tax=Alkalilimnicola sp. S0819 TaxID=2613922 RepID=A0A833IRD6_9GAMM)

HSP 1 Score: 240 bits (612), Expect = 5.270e-70
Identity = 129/226 (57.08%), Postives = 155/226 (68.58%), Query Frame = 1
Query:  382 REALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADIL 1059
            R+AL+  FG D FR GQ  VV  LLAG+S A VFPTG GKS+CYQLP  L+     G+TLVVSPLIALMKDQ DAL A G+   +LDS+L A E   + +++RAG++ +LYV+PERFNNERF   +   ++ALF VDEAHCISEWGHNFRPDYL+LA +AR  +A   LALTATATP+V  DI    DI P    RT FYRP L L +    D  E R  +L D L
Sbjct:    6 RDALQQYFGFDQFRPGQAPVVDHLLAGQSAAAVFPTGGGKSLCYQLPALLLP----GVTLVVSPLIALMKDQIDALAARGIAARRLDSSLSAEEYRAVMDEVRAGTLRILYVAPERFNNERFRAAIARTRIALFAVDEAHCISEWGHNFRPDYLKLAGYARELQAERVLALTATATPQVLEDICRLFDIRPECAVRTGFYRPNLQLLSTVVSD--ENRDLMLLDAL 225          
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: A0A2E9MGE8_9BACT (RecQ family ATP-dependent DNA helicase n=3 Tax=root TaxID=1 RepID=A0A2E9MGE8_9BACT)

HSP 1 Score: 239 bits (610), Expect = 9.730e-70
Identity = 126/208 (60.58%), Postives = 146/208 (70.19%), Query Frame = 1
Query:  376 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTL 999
            DAR AL+  F  DDFR GQ E V  LLAG S A VFPTG GKS+CYQLP  L+     GLTLVVSPLIALMKDQ DAL   G+  A+LDS+L   E   + + +R+G + LLYV+PERFNNERF   + G++++LF VDEAHCISEWGHNFRPDYL+LA FAR   A   LALTATATP+V  DI    DI P +  RT FYRP L L
Sbjct:    4 DARAALKQHFDFDDFRPGQGEAVGHLLAGHSTAAVFPTGGGKSLCYQLPALLLP----GLTLVVSPLIALMKDQIDALQRRGIEAARLDSSLSLDEYRSVMDGVRSGQLRLLYVAPERFNNERFREAISGIRISLFAVDEAHCISEWGHNFRPDYLKLAGFARQYEAERVLALTATATPRVLDDICAGFDIRPEHAVRTGFYRPNLGL 207          
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: UPI001951ACB3 (RecQ family ATP-dependent DNA helicase n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI001951ACB3)

HSP 1 Score: 238 bits (608), Expect = 1.870e-69
Identity = 123/229 (53.71%), Postives = 157/229 (68.56%), Query Frame = 1
Query:  379 AREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLR 1065
            A + L S+FG  DFR+GQE VV++LL   S   VFPTGAGKS+CYQLP  ++     G+TLV+SPLIALMKDQ D L   G+P A+LDSTL   E+  +Y  +RAG++ LLYV+PER  NERF++TL+ +++A+  VDEAHCISEWGHNFRPDY++LA  AR  +    LALTATATP VA DIA   DI   +V +T F+RP L+L         E R  LL+ +  R
Sbjct:    4 ASQVLHSVFGFPDFREGQEAVVSRLLESRSVLAVFPTGAGKSLCYQLPALMLE----GVTLVISPLIALMKDQIDFLTRRGIPAARLDSTLGPEEIRQLYSDLRAGTLKLLYVAPERLANERFLQTLRRLRIAMLAVDEAHCISEWGHNFRPDYMKLASLARTLKVERVLALTATATPSVARDIAAAFDIAAGDVIQTGFHRPNLSLHVTPTQGGDERRELLLSRLRSR 228          
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Match: UPI0003A27C71 (RecQ family ATP-dependent DNA helicase n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI0003A27C71)

HSP 1 Score: 238 bits (607), Expect = 2.520e-69
Identity = 126/215 (58.60%), Postives = 149/215 (69.30%), Query Frame = 1
Query:  379 AREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDD 1023
            A E L++ FG + FRDGQ+  + KLLAGES   VFPTG GKS+CYQLP  L+     GLTLVVSPLIALM+DQ  AL A G+  A+LDS+    EV +IY Q+R G + LLYV+PER  NERF+  LK +++AL  VDEAHCISEWGHNFRPDYL+LA  A+  RA   LALTATATP VA DI  +  IP +N   T FYRP L LG     DD
Sbjct:    4 ALEILKTTFGLEAFRDGQQAAIDKLLAGESVLTVFPTGGGKSLCYQLPALLIE----GLTLVVSPLIALMQDQVAALHARGIAAARLDSSRTGDEVREIYRQLRRGELKLLYVAPERLQNERFLSLLKDLRIALLAVDEAHCISEWGHNFRPDYLKLAQLAQTLRAQRVLALTATATPSVAEDICRQFGIPAANHIHTGFYRPNLALGVTPCRDD 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13917.3059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZN1_ECTSI5.800e-16987.71DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JUW0_9PHAE2.850e-11070.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8G9_9STRA5.820e-7856.06DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
X0SQ01_9ZZZZ6.230e-7355.17Helicase ATP-binding domain-containing protein (Fr... [more]
A0A432UW22_9GAMM2.790e-7057.58RecQ family ATP-dependent DNA helicase n=1 Tax=Thi... [more]
A0A3D2Z062_9BACT5.060e-7056.58RecQ family ATP-dependent DNA helicase n=1 Tax=Can... [more]
A0A833IRD6_9GAMM5.270e-7057.08RecQ family ATP-dependent DNA helicase n=1 Tax=Alk... [more]
A0A2E9MGE8_9BACT9.730e-7060.58RecQ family ATP-dependent DNA helicase n=3 Tax=roo... [more]
UPI001951ACB31.870e-6953.71RecQ family ATP-dependent DNA helicase n=1 Tax=Arc... [more]
UPI0003A27C712.520e-6958.60RecQ family ATP-dependent DNA helicase n=1 Tax=Mar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13917contigEcto-sp13_S_contig13917:57..4566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score502.7
Seed ortholog evalue1.4e-139
Seed eggNOG ortholog2880.D7FZN1
Model size1095
KEGG koko:K03654
KEGG Pathwayko03018,map03018
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-17_003860.1
EC3.6.4.12
Cds size1074
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13917.3059.1prot_Ecto-sp13_S_contig13917.3059.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13917 78..4566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462742.6394746-UTR-Ecto-sp13_S_contig13917:56..771681462742.6394746-UTR-Ecto-sp13_S_contig13917:56..77Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13917 57..77 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462742.6584783-CDS-Ecto-sp13_S_contig13917:77..4881681462742.6584783-CDS-Ecto-sp13_S_contig13917:77..488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13917 78..488 +
1681462742.6691232-CDS-Ecto-sp13_S_contig13917:1262..14271681462742.6691232-CDS-Ecto-sp13_S_contig13917:1262..1427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13917 1263..1427 +
1681462742.6800106-CDS-Ecto-sp13_S_contig13917:2163..22501681462742.6800106-CDS-Ecto-sp13_S_contig13917:2163..2250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13917 2164..2250 +
1681462742.690628-CDS-Ecto-sp13_S_contig13917:2896..30251681462742.690628-CDS-Ecto-sp13_S_contig13917:2896..3025Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13917 2897..3025 +
1681462742.701869-CDS-Ecto-sp13_S_contig13917:3526..36281681462742.701869-CDS-Ecto-sp13_S_contig13917:3526..3628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13917 3527..3628 +
1681462742.7131095-CDS-Ecto-sp13_S_contig13917:4124..41771681462742.7131095-CDS-Ecto-sp13_S_contig13917:4124..4177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13917 4125..4177 +
1681462742.7215354-CDS-Ecto-sp13_S_contig13917:4439..45661681462742.7215354-CDS-Ecto-sp13_S_contig13917:4439..4566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13917 4440..4566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13917.3059.1

>prot_Ecto-sp13_S_contig13917.3059.1 ID=prot_Ecto-sp13_S_contig13917.3059.1|Name=mRNA_Ecto-sp13_S_contig13917.3059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp
MVTHRLRIMMTLVPILSRLEGRAIALAAARYPRLNSALPTASNAPGAATG
SRSSSTTGTGTGTSSHPLFQRRRPRSHSLAGNSRGRPVVPTRTLAVGDES
AALGKTAGASAEGLLGVEDAREALRSLFGHDDFRDGQEEVVAKLLAGESC
AGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAG
VPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGVK
VALFVVDEAHCISEWGHNFRPDYLRLADFARAARANARLALTATATPKVA
VDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGE
HQQQGSGT
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mRNA from alignment at Ecto-sp13_S_contig13917:57..4566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13917.3059.1 ID=mRNA_Ecto-sp13_S_contig13917.3059.1|Name=mRNA_Ecto-sp13_S_contig13917.3059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13917:57..4566+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAGAGTCGTAGAGTCGACATGGTTACGCATCGGTTACGTATCATGAT GACGCTGGTACCGATTCTCAGTCGCCTGGAAGGCAGGGCGATCGCCTTGG CAGCAGCGAGATATCCCCGACTGAACTCCGCATTACCCACCGCCAGCAAC GCTCCAGGTGCTGCTACGGGCAGCAGAAGCAGTAGCACTACCGGCACCGG CACCGGCACCAGCAGCCACCCACTTTTTCAACGAAGAAGACCACGCTCCC ACTCTCTCGCGGGCAACAGTAGGGGTAGACCCGTCGTGCCAACACGGACG CTTGCAGTTGGCGATGAGAGCGCAGCGCTTGGCAAGACGGCAGGAGCCAG CGCTGAGGGTTTGTTAGGCGTGGAGGACGCACGCGAGGCTCTGAGGTCGT TGTTTGGACACGACGACTTTCGGGACGGGCAGGTGGGGATGCTGGTTGCC ATGTGGGTACATGACCTCACGGCCTATTTGAATAGGGACAGTCTGTGCCT TGGGTTTTGGCCGTAAAGGCAAAGGATCAGCACTCACAGCGGTGGTACGC ATTTGTCGACAACACCTGGCCTGTCTTTTCAAACCAAAGAGGTGCACGTA GACGAGAGATCATCCGCATGGGGCAGCCGCCTGATCTTCCGAAGTAGAGC CTCCTCACGATGGCAGTGACGGATGGCAATACCGCGAAGACCGCGGACAT CGGTGTTGACACGCTACTGAAAGCCTGTACGACACACAAGACAAGAATAC AACAATACGTAACAGCTGCACAGACAACAACACATGATCAACGACATACC GATGCCACTTGCTTAGGGCCGATTCTCATCCAGCGCCTTTTCCCGTCAAC GTCACAGTGGACGAAGTCTCAAAACCGCCTCCTCTCCCGTCAATATCTTT GCGGCCATCATACACACTCAATTGTCAAGAAAATTTCCCTACCCTATCAA ATTGACCCTACAAAGTCCCCAGACTGCTGTCCCCCGTCCCCCCACCGCAT CCCGCCCCCCCCTCCTGCACTGGCATGATGAATTCGACTTGAACTCCCGT CAAGTTTGTTGGTGAAGCAAGGCGGCGACAGAACACCACTCCACCGAAAT TTTCGAGTAAAAACAAGGCCCGTTGTGTCCGAAAAGTAGCCGTGAGTGCG ACGCACACGACCCTCGACTGCCGCCGTCGCACGCTCCTCTTGCTGTGCCA TACCAGGAGGAAGTGGTTGCGAAGCTCCTCGCAGGAGAGTCGTGCGCAGG CGTTTTCCCAACGGGCGCAGGGAAATCGATCTGCTACCAGCTCCCGGGCA CCCTCATGGCCAGGCAGGGGCTTGGGCTGACTCTCGTGGTGTCTCCACTA ATCGCTCTCATGAAAGACCAGGTACGGTAAATGTTACTGATCCATAACCT TTTTTTAAGTCTCTTGGGTGCGCGTGAGGACATAGCTCTCTGTCGGGGAC AGCTTACGGGTTTGGTTCTTCTGTGGGTCGGATTGGGCACAATTGCCGGC GTAGAGGATAAGTTTGGCCCGCGTGAGGGATAGGGCGGGCGCTGGCACCG CCGTCTTGAGCTGGTTTGACCGCCATTCCATCCCACACGCACCCCGCCGA TTACGTTTATTTCGCCACTTCATACCAGCGGCGTGCAGCACATAATACGC ATGGGGGACAGTTGCAGTGACTGCGGAAGTTCATTTCTTGAGCTGCTTTT TCCCGCGGGTGCGTGGTGTGTTTTCATAGCCTCCTCGGCCTTTGGAGGGT GCTCGGGAATAGGATTGGCCTGATCTCCTCCAGGAAACACCCTCGTTCGC AGCGAGAACATACTAACAAGGTTAGGAGGTTTGCCAAAGCAGAAAGGGGC GGACGTCCGGATCACAGATGGCCACAGCACCCTTCCCCCCCGAAGAACCT TTTGCACTTCGAAAGACCACTACTCGTTTGCGGGCGTGCCCACTTGTCCA TTCTCAGTCGTAAGTAAACGCTTCCAAGCCCTTTCGGCCCCGTTTGCACC ACGTTATTGCTTGTCATCTACCCATGACTCTAGACGCCATGGATACTCGC AGTCCCACCGCGAACTCCCTCTGTACTTCATCGCTCGCCTTCACGCTATC CTTAAAGACCGACGCGTTGATTGCAGCGGGAGTTCCATGCGCCAAGCTGG ATTCCACGCTCGAGGCGCATGAGGTCTACGACATCTACGAGCAGGTAACA TACGGACAACGACATCGGCGGGACGTAGGTTCGTTGCGCAGTATGGGGTT CAGAATTGGCGGTAAGGTGTGAAGGTAAGATGGCCGCACCTCTGCGGGAT CCTGTTCTTTCGGGGGACTGGAAAGTGTGGAGATTTGTTAGTTACCTCCG TGTCCGCAGATCAGGACCCTCACTGCAGAGGTATGGCGCCGTGCTTTGGC TATCCTCTTGCGTCTCGTATACTGGAAGTATGACGTTCTTCCAGGCTCTT GTTGTCTGACACTCGCTCACACGGATGAGCAAGACCTGTCGCTCACTCCG ATATTGTGCATGCCCACTGGTGTCCTCTTGCCATGTGGTGGGTTTCGTCG CGCTGCTTGCGCTGTTGACTAAGATAAGGTTTGCCCTCCCCGTCGTTCAT GGCCTCTTGTTACGCTCTCGGCATGCCAATCCGCCTGTACTTGTTTGTCT CTGGCCGGCTGCGGCTTACACGTGTACGTACACCATCCACATGCGTTGGA ACTTAGTCCGCAAACAGACGTTGGAGTCGGGGGTTGTAAGGCTTTCGGCG CTCGCATTTTTTGGAAGCATGTGCTTTCCAAATAAAGAAGCGATTCACTG AGATTTTTTTTATGTCGAATTCGTTGCCATGCGGCCACAGATCCGCGCGG GAAGCGTTGCCCTGCTGTACGTGTCTCCGGAGCGTTTCAACAACGAGCGT TTCGTCAGGACCCTAAAGGGGGTCAAGGTGGCCCTCTTCGTGGTGGACGA GGCCCACTGCATCAGCGAGGTGGGCGGTCAGGAGCTCGGCGATTGGAGTT TGCCCCACGTTCAATAGGTTTCCTAGCGGCCTGCCCCTCCCCTCGGGCAG CGAAGGGTGTGCTGCGGCGCTCAGCGCCGGATGCCGCCACCTGTTCAGGC CAAGCGTACGCCCTTCCCCCTGTTCTCGCCTGATTCCGCGCTTCTTTGCC CAACGTCGTGGTTCCTGCTGCCCCGATATTGTCATGACAGCCAGCCGTCA ACGACCCCCCACCCCCACCCCCCGATGTTGCGAGACGAGCCTAAAAAATA TTACCAAAGCAGTAGAGGTCCCTGTTTGGTGCCGGTTGAATAGTGACGGT TGCCGTTTTAGTGCCGGTGTTTTTGGCTCGCACCCACTGGAATACCAAGT CGTTCTGTACATGGAATAGTGCCGGTGTCCGGTTTAGTGCCGGTGAAATT TCGGTGCCCACCCCGGCACTAAACAGGGACCTCTACTGAGCCTGTTTTGC ATCTCGTGGCCCCCCCATAGTGGGGGCACAACTTCCGGCCGGACTACTTG CGCCTAGCCGACTTTGCGAGGGCTGCGCGGGCGAACGCGCGTTTGGCTCT CACGGCCACGGCAACGCCTAAGGTGGGTTTGCAGGGCTGCTGGGTGGGCA ATAGCTTCAGGGTGGCTCCAAGCTCTTATTGGCGTTCCCCGCGAAATCTG TTGTCGTATGCTGATGAGCCGAAATCGCCGAAACCGAGACCCGTTATTTC CTGGCTGCCTCCTATTTACTATTTACAACAAGGATTTACAACAAGTAAGG TTTCCGTGTCGTTCAGAAGGGTCGTGATTGTACTGAAAGTGGCCAACGGT ACAAAACCACCGGAGCACTAGAAACTCCTTCCGGAGGAATAGGTTAGGCT CCCGAGATTTTGTCGTGTCTGGCTCCCAACAATAACTGGCCCAATGATTC CTCTTCTTTAAACCAAATCCTTCTCGGGACAACAGGGGTTTGTTTACTGT TCACTGTAAATCAACGACTTGGAGCAAAACTAATAGAGTGTGTGTCTTGA AGACCCATGTGCTGGACGTATTCCGTGAGCATAATCGAAACCTGTATGTT TCCACCCCGACTACACAGGTTGCCGTGGATATTGCCAACCGTCTCGACAT ACCGCCTTCAAACGTCAACAGGTGAGGTGGCCATGCTGTTGTCTCTTGGT GCTGCTGACGGTGGTTTATGTTGGTCTCGACGATGTATGCGACTGCTGCT GCGGCTGTTGCTGCGGCTGTTGCTTCTGTCGGTGACGACACCTAACCAAA ATAGAGACTCAGGATGATTGAGCATCGCCAGCTACAAACACTCAACGCCC CCCCCTCGCCCCCCAAACCCTCAACTCAATGGTCTAACCCCGCCACCCCC AACTTTCCTTCCTGTCCACGTTTACGCCAACAGAACACCGTTCTACCGCC CGATGCTGACCCTCGGCGCCGTTCGCGCTCCGGATGATCAAGAGGAGCGA GCCCGTCTGCTCGCCGACATCCTGCTCCGCGGAGAGCACCAGCAGCAGGG AAGCGGTACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13917:57..4566+

>mRNA_Ecto-sp13_S_contig13917.3059.1 ID=mRNA_Ecto-sp13_S_contig13917.3059.1|Name=mRNA_Ecto-sp13_S_contig13917.3059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13917:57..4566+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTACGCATCGGTTACGTATCATGATGACGCTGGTACCGATTCTCAG
TCGCCTGGAAGGCAGGGCGATCGCCTTGGCAGCAGCGAGATATCCCCGAC
TGAACTCCGCATTACCCACCGCCAGCAACGCTCCAGGTGCTGCTACGGGC
AGCAGAAGCAGTAGCACTACCGGCACCGGCACCGGCACCAGCAGCCACCC
ACTTTTTCAACGAAGAAGACCACGCTCCCACTCTCTCGCGGGCAACAGTA
GGGGTAGACCCGTCGTGCCAACACGGACGCTTGCAGTTGGCGATGAGAGC
GCAGCGCTTGGCAAGACGGCAGGAGCCAGCGCTGAGGGTTTGTTAGGCGT
GGAGGACGCACGCGAGGCTCTGAGGTCGTTGTTTGGACACGACGACTTTC
GGGACGGGCAGGAGGAAGTGGTTGCGAAGCTCCTCGCAGGAGAGTCGTGC
GCAGGCGTTTTCCCAACGGGCGCAGGGAAATCGATCTGCTACCAGCTCCC
GGGCACCCTCATGGCCAGGCAGGGGCTTGGGCTGACTCTCGTGGTGTCTC
CACTAATCGCTCTCATGAAAGACCAGACCGACGCGTTGATTGCAGCGGGA
GTTCCATGCGCCAAGCTGGATTCCACGCTCGAGGCGCATGAGGTCTACGA
CATCTACGAGCAGATCCGCGCGGGAAGCGTTGCCCTGCTGTACGTGTCTC
CGGAGCGTTTCAACAACGAGCGTTTCGTCAGGACCCTAAAGGGGGTCAAG
GTGGCCCTCTTCGTGGTGGACGAGGCCCACTGCATCAGCGAGTGGGGGCA
CAACTTCCGGCCGGACTACTTGCGCCTAGCCGACTTTGCGAGGGCTGCGC
GGGCGAACGCGCGTTTGGCTCTCACGGCCACGGCAACGCCTAAGGTTGCC
GTGGATATTGCCAACCGTCTCGACATACCGCCTTCAAACGTCAACAGAAC
ACCGTTCTACCGCCCGATGCTGACCCTCGGCGCCGTTCGCGCTCCGGATG
ATCAAGAGGAGCGAGCCCGTCTGCTCGCCGACATCCTGCTCCGCGGAGAG
CACCAGCAGCAGGGAAGCGGTACG
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