mRNA_Ecto-sp13_S_contig13914.3056.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13914.3056.1
Unique NamemRNA_Ecto-sp13_S_contig13914.3056.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13914.3056.1 vs. uniprot
Match: D7FUQ7_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUQ7_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 9.430e-28
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 2 
Query:   80 SLLASVPVRARPAGEGGVTGGALAAKSLRRREFMGAAASLSRNRRLSEVGRPPCRRLRGPELAPPPPVAEVCGDRG 307
            SL+A V  RARPAGEGGVTGGALAAKSLRRREFMGAAA LSR+RRL   GRPPCRRLRGPELAP  P+AE CGDRG
Sbjct:  754 SLMAWVSARARPAGEGGVTGGALAAKSLRRREFMGAAAPLSRHRRLPGKGRPPCRRLRGPELAPQSPLAEACGDRG 829
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13914.3056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUQ7_ECTSI9.430e-2882.89Protein kinase domain-containing protein n=2 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13914contigEcto-sp13_S_contig13914:458..847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462742.379797-CDS-Ecto-sp13_S_contig13914:457..8471681462742.379797-CDS-Ecto-sp13_S_contig13914:457..847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13914 458..847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13914.3056.1prot_Ecto-sp13_S_contig13914.3056.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13914 458..847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13914.3056.1

>prot_Ecto-sp13_S_contig13914.3056.1 ID=prot_Ecto-sp13_S_contig13914.3056.1|Name=mRNA_Ecto-sp13_S_contig13914.3056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
PNGRAAGAPHISRYPSTGAVAACRGYQFAGVGTGAGTAGRRGRGYRRSAS
SEVTAPAGIYGGGGVFVAKPPPVGGRTAAVPPASGAGVGATAAGSGGVRR
PGVVSAAEDMHLAAVAMARARIGRISSRF*
back to top

mRNA from alignment at Ecto-sp13_S_contig13914:458..847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13914.3056.1 ID=mRNA_Ecto-sp13_S_contig13914.3056.1|Name=mRNA_Ecto-sp13_S_contig13914.3056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13914:458..847+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAACGGCCGCGCCGCCGGGGCACCGCACATCAGCAGATACCCTTCTAC
TGGTGCTGTTGCTGCCTGTCGTGGGTATCAGTTTGCTGGCGTCGGTACCG
GTGCGGGCACGGCCGGCAGGCGAGGGAGGGGTTACCGGAGGAGCGCTAGC
AGCGAAGTCACTGCGCCGGCGGGAATTTATGGGGGCGGCGGCGTCTTTGT
CGCGAAACCGCCGCCTGTCGGAGGTAGGACGGCCGCCGTGCCGCCGGCTT
CGGGGGCCGGAGTTGGCGCCACCGCCGCCGGTAGCGGAGGTGTGCGGCGA
CCGGGGGTAGTGTCGGCAGCGGAAGACATGCACCTTGCGGCGGTGGCGAT
GGCCCGCGCTAGGATAGGAAGAATATCGTCGAGGTTTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13914:458..847+

>mRNA_Ecto-sp13_S_contig13914.3056.1 ID=mRNA_Ecto-sp13_S_contig13914.3056.1|Name=mRNA_Ecto-sp13_S_contig13914.3056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13914:458..847+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAACGGCCGCGCCGCCGGGGCACCGCACATCAGCAGATACCCTTCTAC
TGGTGCTGTTGCTGCCTGTCGTGGGTATCAGTTTGCTGGCGTCGGTACCG
GTGCGGGCACGGCCGGCAGGCGAGGGAGGGGTTACCGGAGGAGCGCTAGC
AGCGAAGTCACTGCGCCGGCGGGAATTTATGGGGGCGGCGGCGTCTTTGT
CGCGAAACCGCCGCCTGTCGGAGGTAGGACGGCCGCCGTGCCGCCGGCTT
CGGGGGCCGGAGTTGGCGCCACCGCCGCCGGTAGCGGAGGTGTGCGGCGA
CCGGGGGTAGTGTCGGCAGCGGAAGACATGCACCTTGCGGCGGTGGCGAT
GGCCCGCGCTAGGATAGGAAGAATATCGTCGAGGTTTTGA
back to top