mRNA_Ecto-sp13_S_contig13903.3051.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13903.3051.1
Unique NamemRNA_Ecto-sp13_S_contig13903.3051.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13903.3051.1 vs. uniprot
Match: D8LHE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE9_ECTSI)

HSP 1 Score: 415 bits (1067), Expect = 5.810e-146
Identity = 226/232 (97.41%), Postives = 226/232 (97.41%), Query Frame = 1 
Query:    1 MEVAVQVFGAAGLVETVVEVAYVVATLHRFTTFEEWYFLASVSFEVAGELLFLSAGICLLSRNSNRRTTARALTKDPVHHVAAVATDSDYMSWEFAALSLASTVVSLLPLLAWATFLPVWGEPFAEDDGDEGLRVALSAFSLTGVVAMLASAERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCTGVLGKALVVLLTVEIFSVAFAVVVIFSVVRRDF 696
            MEVAVQVFGAAGLVETVVEVAYVV TL RFTTFEEWYFLASVSFEVAGELLFL AGICLLSRNSNRRTTARALTKDPVHHVAAVATDSDYMSWEFAALSLASTVVSLLPLLAWATFLPVWGEPFAED GDEGLRVALSAFSLTGVVAMLAS ERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCTGVLGKALVVLLTVEI SVAFAVVVIFSVVRRDF
Sbjct:    1 MEVAVQVFGAAGLVETVVEVAYVVTTLRRFTTFEEWYFLASVSFEVAGELLFLFAGICLLSRNSNRRTTARALTKDPVHHVAAVATDSDYMSWEFAALSLASTVVSLLPLLAWATFLPVWGEPFAEDGGDEGLRVALSAFSLTGVVAMLASGERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCTGVLGKALVVLLTVEILSVAFAVVVIFSVVRRDF 232
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BLAST of mRNA_Ecto-sp13_S_contig13903.3051.1 vs. uniprot
Match: A0A6H5JPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP1_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 4.670e-83
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 1 
Query:  271 MSWEFAALSLASTVVSLLPLLAWATFLPVWGEPFAEDDGDEGLRVALSAFSLTGVVAMLASAERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCTGVLGKALVVLLTVEIFSVAFAVVVIFSVVRRD 693
            MSWEFAALSLASTVVSL+PLLAWATFLPVWGEPFAEDDGDE LRVALSAFSLTGVVAMLASAERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLC+GVLGKALVVLLTVEI SVAFAVVVIFSVVR+D
Sbjct:    1 MSWEFAALSLASTVVSLVPLLAWATFLPVWGEPFAEDDGDEDLRVALSAFSLTGVVAMLASAERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCSGVLGKALVVLLTVEILSVAFAVVVIFSVVRQD 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13903.3051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHE9_ECTSI5.810e-14697.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPP1_9PHAE4.670e-8396.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13903contigEcto-sp13_S_contig13903:2855..4362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size699
Hectar predicted targeting categoryother localisation
Exons2
Cds size699
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.9467084-CDS-Ecto-sp13_S_contig13903:2854..29571681462741.9467084-CDS-Ecto-sp13_S_contig13903:2854..2957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13903 2855..2957 +
1681462741.9573357-CDS-Ecto-sp13_S_contig13903:3766..43621681462741.9573357-CDS-Ecto-sp13_S_contig13903:3766..4362Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13903 3767..4362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13903.3051.1prot_Ecto-sp13_S_contig13903.3051.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13903 2855..4362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13903.3051.1

>prot_Ecto-sp13_S_contig13903.3051.1 ID=prot_Ecto-sp13_S_contig13903.3051.1|Name=mRNA_Ecto-sp13_S_contig13903.3051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MEVAVQVFGAAGLVETVVEVAYVVATLHRFTTFEEWYFLASVSFEVAGEL
LFLSAGICLLSRNSNRRTTARALTKDPVHHVAAVATDSDYMSWEFAALSL
ASTVVSLLPLLAWATFLPVWGEPFAEDDGDEGLRVALSAFSLTGVVAMLA
SAERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCTG
VLGKALVVLLTVEIFSVAFAVVVIFSVVRRDF*
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mRNA from alignment at Ecto-sp13_S_contig13903:2855..4362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13903.3051.1 ID=mRNA_Ecto-sp13_S_contig13903.3051.1|Name=mRNA_Ecto-sp13_S_contig13903.3051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1508bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13903:2855..4362+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTTGCCGTTCAAGTCTTCGGGGCGGCAGGTCTCGTCGAAACCGT
GGTAGAAGTCGCCTACGTCGTTGCCACCCTGCACCGGTTCACCACCTTCG
AAGGTAAGGCTTGACAGCACCGCACAATTTGGTGTGGTTGTCTCTGTTGC
CTGTGTCGTTGCCAACACGCACCGATTCACCACCTCTGAAGGCAATGCTT
GACAGCGCCATAGAACAACACATGCTCTGGAAGCACAGAAAAGCTCAAAA
CGTGTCTCTGTTGCCTTGTGTCGTTACCAACCCGAACCGATTCATCACCT
TCTAAGGTAAGGCTTGATAGCCCGAAACCGTCACACGATTCGTGCTCTGG
ACATGGAAATGCTCGGGAGTAGTGGTAAGAATCAAGGGATTGTCTTTACT
ACTTTTGGTAAGCAGGAAGAGTCCGCTGAAAGCGGTTCGAGAGTTGGCTT
TTGTAGTTGTTATGACAGGATTGTTTTTGAGTACTTCGGTGAGTCCAACA
GAGAGCGCGCATCCAGGCCGCCTGACAGTGGTGGTATCTTTCATCAAGTA
GAGGAGGTTCACGAAAGCTGCTGAATAGTTTGACAGAGTGTCTCTGTTGC
TTACGTCGTTGCCAACCTGAACCGATTCGTCAGTGGTGGTATCGTTTCAT
CCAGTAGAGGAGGTTTGACCACAGCCGCTGAATTATACTCCAGAGCGCCG
CTGTTGCGTATGTTGTTGTTGTTGTTTTGTTGTTGTTGTCGTTGTTGTTA
TTGTTGTTTTTGTTGTTGTGCTGCTGGTGGTGCTGCCGCTGCTGGTGCTG
CTGCTGGTGCTGCTGCTGGTGCTGCTGCATCTTGTCTCCTTGGTTGCCGT
AGAGAGACGTGCAAACACTTCCAACCCATCCCAGTACAAACCCCATCCTC
CCCGCGCCGCAGAATGGTACTTCTTGGCTTCCGTTAGCTTCGAGGTGGCC
GGCGAGCTCCTCTTCCTCTCCGCCGGCATCTGCCTCCTGAGCCGCAACTC
GAACCGCCGAACGACCGCGAGGGCGCTCACGAAGGACCCGGTCCACCACG
TGGCGGCGGTGGCTACCGACTCCGACTACATGAGCTGGGAGTTCGCGGCC
CTGTCTCTCGCCTCCACGGTTGTCTCCCTGCTGCCGTTGCTCGCCTGGGC
TACCTTCTTGCCAGTCTGGGGGGAGCCGTTCGCTGAAGACGACGGCGACG
AAGGCCTACGCGTCGCCTTGTCCGCGTTTTCTCTGACCGGGGTAGTGGCG
ATGCTAGCCTCTGCGGAGAGAGCCAGGAGGTCTTCGCCGGGGTCGAAGCG
GCAGCGAGCCATGGACACCCTGGTGGTTGTCGGCGTCGTCAGCTACGCCA
CGCAGAAGGCCTTCGAGGTGTGCGTGCTCGCGTCGGCCTGGGAGAGGCTG
TGCACGGGCGTGCTGGGCAAGGCTCTGGTCGTTCTCCTGACGGTTGAGAT
TTTTTCCGTAGCGTTTGCGGTGGTGGTGATTTTCTCGGTCGTTCGCCGAG
ATTTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13903:2855..4362+

>mRNA_Ecto-sp13_S_contig13903.3051.1 ID=mRNA_Ecto-sp13_S_contig13903.3051.1|Name=mRNA_Ecto-sp13_S_contig13903.3051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13903:2855..4362+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTTGCCGTTCAAGTCTTCGGGGCGGCAGGTCTCGTCGAAACCGT
GGTAGAAGTCGCCTACGTCGTTGCCACCCTGCACCGGTTCACCACCTTCG
AAGAATGGTACTTCTTGGCTTCCGTTAGCTTCGAGGTGGCCGGCGAGCTC
CTCTTCCTCTCCGCCGGCATCTGCCTCCTGAGCCGCAACTCGAACCGCCG
AACGACCGCGAGGGCGCTCACGAAGGACCCGGTCCACCACGTGGCGGCGG
TGGCTACCGACTCCGACTACATGAGCTGGGAGTTCGCGGCCCTGTCTCTC
GCCTCCACGGTTGTCTCCCTGCTGCCGTTGCTCGCCTGGGCTACCTTCTT
GCCAGTCTGGGGGGAGCCGTTCGCTGAAGACGACGGCGACGAAGGCCTAC
GCGTCGCCTTGTCCGCGTTTTCTCTGACCGGGGTAGTGGCGATGCTAGCC
TCTGCGGAGAGAGCCAGGAGGTCTTCGCCGGGGTCGAAGCGGCAGCGAGC
CATGGACACCCTGGTGGTTGTCGGCGTCGTCAGCTACGCCACGCAGAAGG
CCTTCGAGGTGTGCGTGCTCGCGTCGGCCTGGGAGAGGCTGTGCACGGGC
GTGCTGGGCAAGGCTCTGGTCGTTCTCCTGACGGTTGAGATTTTTTCCGT
AGCGTTTGCGGTGGTGGTGATTTTCTCGGTCGTTCGCCGAGATTTCTAG
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