mRNA_Ecto-sp13_S_contig13902.3050.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13902.3050.1
Unique NamemRNA_Ecto-sp13_S_contig13902.3050.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13902.3050.1 vs. uniprot
Match: D7FP17_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP17_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.060e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:  400 VKPRWEGGPGSVFQASGWGTKDRRRCLSMVAVGDVAGVEYSLRTED 537
            + PRWEGGPG VFQASGWGTK+RRRCLSMVAVGDVAGVEYSLRTED
Sbjct:    1 MNPRWEGGPGCVFQASGWGTKERRRCLSMVAVGDVAGVEYSLRTED 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13902.3050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP17_ECTSI2.060e-1991.30Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13902contigEcto-sp13_S_contig13902:434..2523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.8
Seed ortholog evalue9e-17
Seed eggNOG ortholog2880.D7FP17
Preferred nameMSRA4
Model size538
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
Exons2
EggNOG free text desc.peptide-methionine (S)-S-oxide reductase activity
EggNOG OGsCOG0225@1,KOG1635@2759
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
Cds size279
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.8961866-CDS-Ecto-sp13_S_contig13902:433..5821681462741.8961866-CDS-Ecto-sp13_S_contig13902:433..582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13902 434..582 -
1681462741.908266-CDS-Ecto-sp13_S_contig13902:2135..22651681462741.908266-CDS-Ecto-sp13_S_contig13902:2135..2265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13902 2136..2265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.9179065-UTR-Ecto-sp13_S_contig13902:2265..25231681462741.9179065-UTR-Ecto-sp13_S_contig13902:2265..2523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13902 2266..2523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13902.3050.1prot_Ecto-sp13_S_contig13902.3050.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13902 434..2265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13902.3050.1

>prot_Ecto-sp13_S_contig13902.3050.1 ID=prot_Ecto-sp13_S_contig13902.3050.1|Name=mRNA_Ecto-sp13_S_contig13902.3050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MGWKQTAAAGSSIVAMVLARRAASFVRAPTPTAGMRRAIAIRAGGASVKP
RWEGGPGSVFQASGWGTKDRRRCLSMVAVGDVAGVEYSLRTED
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mRNA from alignment at Ecto-sp13_S_contig13902:434..2523-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13902.3050.1 ID=mRNA_Ecto-sp13_S_contig13902.3050.1|Name=mRNA_Ecto-sp13_S_contig13902.3050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13902:434..2523- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCACCCCGAAGCAAAGCTTGGCCACATCGCTCCTCCAATCCCCATTCT
TCAAGCATGTGTGGGTTTGAGACTTACGGCACGGTGGATGAAAGGGGGGC
AATAGTTAGACGTAAGTGGACGGTGCGGCTACCGAATAGTATGCTGTGGC
ACCCCGCCTTGTGTTCCCTCCACCAAGAAAAACTAGAAACCCGGGTGCAG
CAGCGGTGAGCTCTGTGGTACGAACACCGACAAACGTAGCCTACGTTACT
CTGAGGTAATGGGCTGGAAGCAAACCGCAGCGGCCGGGAGCAGCATCGTC
GCTATGGTGCTTGCAAGGCGGGCTGCGTCGTTCGTGAGAGCGCCAACGCC
CACGGCGGGCATGAGGAGAGCTATCGCCATCAGGGCAGGTACGCTTGCGT
GCTTCCCACAGCAGGAACAACATCTGTCTGTCTGTTGGTTGGGCTAACCA
TTGTTGTGGTTTGTCACCGCTTTGTTCCTCGTCCAGCTCTCTCTCCCTCT
CTCCTACTAGTGTATGACCATTAGGTGCGGTGAGAGGGTGTACCCCCCCT
TCATCAGTTTCTTTTTTCCGCTACCGCTGTGTTTGATTGAACCTCTGGGC
AAGTGTTCTGGTGCAAGCAGCAGCACGGTTTTTTACAGCAGGCGACCAAT
CTGTGGGAATGGGAGTAATGACATTTATTCTAGAATCGCTGCTGGAAACT
CAGAGCTATCGGACGTGCCTGAAGGCCGTAGGGGCTGGTAGGTGGACTTG
TACAGTTCATCCCACCCCTCATTCTGCAGGGAGTTTTGCGCTGGGAATCA
GCCTAGGTGGGCAGGAGTACATGTATTATGGAATGGTCCTGATGCCCCTA
AACAACGAGTACAACTTTGCTGTTGTTTCCAAGGAAAAATGAAGGAGTCA
CTTAGGAAAGAGAGACCTGCACTCTTCTCGCAGCAGTCCGAACAAAGGCA
AGCACCTCGCAGGAGGGGTGGGTAGGGAAAGTCCCGGGGAGAGGACCTCT
TCTGTGTGACCACGGAGATTCTACCTGTGGTAACGGAGCTCCTAGCCGGA
AAAACGCGCTGATTGAAGTCATGAAAAAAATTAAAAATAAACGGCGTCAT
ATTTTAAACCGAATACAGCCGAAGGCTTTTCGGTCGTGACACTATCGAAC
GTTACCTTTATCTCCACGCGCGATGACGATGATGGACAACAACAGATGTA
CACGTTTGTTGCGCAGACACCAGGGGAGAGCGCGGCCCTTACCCACACCA
ATTCATGCACCGCAAAGACTTCAAACACCCTGGCATGTTGTTTGTCAGCG
GATGTCGGTGACCCGCCAAATGACTCTCCGACTTTCTCCGCTGACAACGA
CTACGATGCACTTTTTGACGAACGCACCAGCGCGCGAAAAAAAAAATGTA
TCCTGGTGCGAAAAGAAGAGCAAAATCTCGCGATTATGTATCCACCCTGT
ACTTCTCCTTTGCCACGATCACCGGCATCTGTGGTACATGGCGCCTTGCT
CTTCCCTCCGAAAGGAAATGGCGCGGAAAAACGCTGCACCACCCCATTCC
TATAGTACTGTACATCCCTTACGCCCGAGGAGAATTGGCGAACCGCCCTG
CGGTCTAAGGGTTGTCGGCAGATAGACGTGTTCCAAACGAAAGAGAGAGG
GGGGGGGAGGGGGGTAACACTCACGACCGTGCGTGCCATTGTCGTTAGAC
CTTTTACCTCGCATTCCGACAAAGCCGGGACGGAGCACGATGTTCCGTGT
TGTTTTCGGAAGAAAGCCAACGGGCCTCTGCATGAATACATGGTGGGGTC
GCGCTCCGGAGGCCCGCCCGAACGTGCTCGCGATGTGCGGCTAGCCCACC
GTCTATACCAGTCACAAGCAGGAGGGAGATACCATCGACGACGAAAACTG
CTGTGTTTTGCTGATCGATCGGCCGTGTGACTTGTACCAAGGTGGAGCGA
GCGTGAAGCCGCGATGGGAGGGTGGTCCGGGGTCTGTGTTCCAAGCGTCC
GGGTGGGGAACGAAGGACAGGCGCAGGTGCCTGTCGATGGTGGCAGTCGG
GGACGTGGCCGGGGTGGAGTACTCGCTGAGAACGGAGGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13902:434..2523-

>mRNA_Ecto-sp13_S_contig13902.3050.1 ID=mRNA_Ecto-sp13_S_contig13902.3050.1|Name=mRNA_Ecto-sp13_S_contig13902.3050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13902:434..2523- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTGGAAGCAAACCGCAGCGGCCGGGAGCAGCATCGTCGCTATGGT
GCTTGCAAGGCGGGCTGCGTCGTTCGTGAGAGCGCCAACGCCCACGGCGG
GCATGAGGAGAGCTATCGCCATCAGGGCAGGTGGAGCGAGCGTGAAGCCG
CGATGGGAGGGTGGTCCGGGGTCTGTGTTCCAAGCGTCCGGGTGGGGAAC
GAAGGACAGGCGCAGGTGCCTGTCGATGGTGGCAGTCGGGGACGTGGCCG
GGGTGGAGTACTCGCTGAGAACGGAGGAT
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