mRNA_Ecto-sp13_S_contig13901.3049.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13901.3049.1 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE) HSP 1 Score: 311 bits (798), Expect = 3.690e-98 Identity = 182/236 (77.12%), Postives = 190/236 (80.51%), Query Frame = 1
Query: 58 PWVPPLDGVRDVLDGSDDDIEDNHPIHQVGDTDDEGDGEDGANSCSRNNSDDSVA*VDPPTLPDKQRKGGRPTRKGQRSTSPRAGVAGSPVDLVREQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKKKASVKTRKAGXXXXXXXXXXXXXXXXKVSEPVSESXXXXXXDTTHTLRSARRKVTPEQRKKLTEMSKSTCPDRIKERNATFAAADEVSRKRVTQAVLAQERVE 765
PWVPP+DGVRDVLD SDD I DN PIH+VGDTDDEGD EDGAN CSR++SDDSVA + PPTLPDK RKGGRPTRKGQR TSPRAG AGSPVDLV EQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGK+KASVKTRKA E S DTTH+LRSARRKVTPEQ KKLTE+SKSTCPDRIKERNA FAAADEVSRKRV QAVLAQE VE
Sbjct: 19 PWVPPIDGVRDVLDDSDDGINDNRPIHRVGDTDDEGDDEDGANGCSRDDSDDSVACMHPPTLPDKPRKGGRPTRKGQRPTSPRAGAAGSPVDLVTEQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKQKASVKTRKA--------------------EXXXXS------DTTHSLRSARRKVTPEQGKKLTEVSKSTCPDRIKERNAAFAAADEVSRKRVRQAVLAQEGVE 228
BLAST of mRNA_Ecto-sp13_S_contig13901.3049.1 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI) HSP 1 Score: 291 bits (744), Expect = 1.850e-92 Identity = 191/242 (78.93%), Postives = 200/242 (82.64%), Query Frame = 1
Query: 1 QRPVVLARTIAKTAAATTTPWVPPLDGVRDVLDGSDDDIEDNHPIHQVGDTDDEGDGEDGANSCSRNNSDDSVA*VDPPTLPDKQRKGGRPTRKGQRSTSPRAGVAGSPVDLVREQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKKKASVKTRKAGXXXXXXXXXXXXXXXXKVSEPVSESXXXXXXDTTHTLRSARRKVTPEQRKKLTEMSKSTCPDRIKERNATFAAADEVSRK 726
+R VLA T AKTAAAT TPWVP + GVRDV SDDDI+DN PIHQVGDTD CSR++SDDSVA VDPPTL DKQRKGGRPTRKGQRSTSPRAG AG PVDL REQRGEEGATRKKASKGASGDPLDVDSG SEQPAP+GKKKASVKTRKAGXXXXXXXXXXXXXXXX VSEPVSE DTT TLRSARRKVTPEQRK LTEMSKSTCPDRIKER+A FAA +E R+
Sbjct: 65 ERTQVLASTRAKTAAATATPWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXX-VSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRR 305
BLAST of mRNA_Ecto-sp13_S_contig13901.3049.1 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI) HSP 1 Score: 291 bits (744), Expect = 2.290e-90 Identity = 191/242 (78.93%), Postives = 200/242 (82.64%), Query Frame = 1
Query: 1 QRPVVLARTIAKTAAATTTPWVPPLDGVRDVLDGSDDDIEDNHPIHQVGDTDDEGDGEDGANSCSRNNSDDSVA*VDPPTLPDKQRKGGRPTRKGQRSTSPRAGVAGSPVDLVREQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKKKASVKTRKAGXXXXXXXXXXXXXXXXKVSEPVSESXXXXXXDTTHTLRSARRKVTPEQRKKLTEMSKSTCPDRIKERNATFAAADEVSRK 726
QR VLA T AKTAAAT TPWVP + GVRDV SDDDI+DN PIHQVGDTD CSR++SDDSVA VDPPTL DKQRKGGRPTRKGQRSTSPRAG AG PVDL REQRGEEGATRKKASKGASGDPLDVDSG SEQPAP+GKKKASVKTRKAGXXXXXXXXXXXXXXXX +SEPVSE DTT TLRSARRKVTPEQRK LTEMSKSTCPDRIKER+A FAA +E R+
Sbjct: 24 QRTQVLASTRAKTAAATATPWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXX-MSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRR 264
BLAST of mRNA_Ecto-sp13_S_contig13901.3049.1 vs. uniprot
Match: A0A6H5JEG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG3_9PHAE) HSP 1 Score: 251 bits (640), Expect = 1.300e-76 Identity = 163/240 (67.92%), Postives = 172/240 (71.67%), Query Frame = 1
Query: 10 VVLARTIAKTAAATTTPWVPPLDGVRDVLDGSDDDIEDNHPIHQVGDTDDEGDGEDGANSCSRNNSDDSVA*VDPPTLPDKQRKGGRPTRKGQRSTSPRAGVAGSPVDLVREQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKKKASVKTRKAGXXXXXXXXXXXXXXXXKVSEPVSESXXXXXXDTTHTLRSARRKVTPEQRKKLTEMSKSTCPDRIKERNATFAAADEVSRKR 729
VVLA TI KTAAAT TPWVPP+ GVRD CSR++S+DSVA DPPTLPD QRKGGRPTRKGQRSTSPRAG AG PVDL REQRGEEGATRKKAS+GASGDPLDVDS G EQPAPKGKKKASVKTR A KVSEPVSE XXXXXXDTTHTLRSARRKV PEQRKKLTEMSKSTC D+IKER+A FAA +EVS+KR
Sbjct: 3 VVLASTIPKTAAATATPWVPPIHGVRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSRDDSNDSVACADPPTLPDNQRKGGRPTRKGQRSTSPRAGAAGPPVDLAREQRGEEGATRKKASRGASGDPLDVDSVGPEQPAPKGKKKASVKTRNA--------------CGKKVSEPVSEXXXXXXXDTTHTLRSARRKVPPEQRKKLTEMSKSTCSDQIKERDAAFAAHNEVSKKR 228
BLAST of mRNA_Ecto-sp13_S_contig13901.3049.1 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI) HSP 1 Score: 189 bits (480), Expect = 2.090e-51 Identity = 129/163 (79.14%), Postives = 139/163 (85.28%), Query Frame = 1
Query: 241 LPDKQRKGGRPTRKGQRSTSPRAGVAGSPVDLVREQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKKKASVKTRKAGXXXXXXXXXXXXXXXXKVSEPVSESXXXXXXDTTHTLRSARRKVTPEQRKKLTEMSKSTCPDRIKERNATFAAADEVSRKR 729
+ D+ RKGGRPTRK QRST P AG GS VDL EQRGE+G RKKASKGASGDPLDVDSG SEQ APKG+KKASVKTR+AGXXXXXXXXXXXXXXXXKVSE SES DTTHT+RSARRK+TPEQRK+LTE+SKSTCPDR+KERNA AAADEVSRKR
Sbjct: 75 IDDQMRKGGRPTRKRQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRKKASVKTREAGXXXXXXXXXXXXXXXXKVSESESES------DTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNAALAAADEVSRKR 231
BLAST of mRNA_Ecto-sp13_S_contig13901.3049.1 vs. uniprot
Match: D7FL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL21_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 3.550e-11 Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 2
Query: 77 MESATSLMAQTTTLRTTIPSTKLGTRTMKAMARMGRTAAAATTLTIASH 223
MESATSL+ +TTTL TT PS KLGTR M A ARMGRTAAAATTLTIASH
Sbjct: 1 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASH 49 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13901.3049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13901.3049.1 >prot_Ecto-sp13_S_contig13901.3049.1 ID=prot_Ecto-sp13_S_contig13901.3049.1|Name=mRNA_Ecto-sp13_S_contig13901.3049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp MSKSTCPDRIKERNATFAAADEVSRKRVTQAVLAQERVEEEGGGEEHSGCback to top mRNA from alignment at Ecto-sp13_S_contig13901:169..3551- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13901.3049.1 ID=mRNA_Ecto-sp13_S_contig13901.3049.1|Name=mRNA_Ecto-sp13_S_contig13901.3049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3383bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13901:169..3551- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13901:169..3551- >mRNA_Ecto-sp13_S_contig13901.3049.1 ID=mRNA_Ecto-sp13_S_contig13901.3049.1|Name=mRNA_Ecto-sp13_S_contig13901.3049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13901:169..3551- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |