mRNA_Ecto-sp13_S_contig1390.3047.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1390.3047.1
Unique NamemRNA_Ecto-sp13_S_contig1390.3047.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: A0A6H5KLR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 7.030e-36
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:   43 MADSRVEQNPPRDVESIAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQLLAEKQPENGL 255
            MADSRVEQN PRD  S+AELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQLLAEKQPENGL
Sbjct:    1 MADSRVEQNAPRDAASLAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQLLAEKQPENGL 71
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: A0A8J6C882_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C882_DIALT)

HSP 1 Score: 68.6 bits (166), Expect = 1.580e-12
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   91 IAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQLL 228
            I E+LPK GLVYSEK  LSEVLCKPK+MPIKS+TL+K+EQ EA L+
Sbjct:    8 IQEVLPKAGLVYSEKGNLSEVLCKPKIMPIKSVTLEKIEQMEANLV 53
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: A0A7J7PN90_9CHLO (BBSome-interacting protein 1 n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7PN90_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 4.060e-12
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   88 SIAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQLLAEKQPE 246
            S+ E+LPK+GLV SEK  LSE+LCKPKL+P+KSITLQKLE+ EAQ+ A  Q +
Sbjct:    9 SLQEVLPKSGLVVSEKGGLSELLCKPKLLPLKSITLQKLEEMEAQVAALNQQQ 61
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: J9HZC4_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HZC4_9SPIT)

HSP 1 Score: 67.4 bits (163), Expect = 4.230e-12
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   58 VEQNPPRDVESIAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQL 225
            V Q  P D + I E++PK GLVYSEK  LSE+LCKPK++P+KS+TLQKLEQ E  L
Sbjct:    5 VSQPLPSD-QQIKEIMPKAGLVYSEKAALSEILCKPKILPLKSVTLQKLEQMENNL 59
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: A0A7S1CLD0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLD0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.180e-12
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   91 IAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQLLA 231
            IAE+LPK GLVYSEK  LSE+LCKPK+MPIKS+TL+KLEQ E +  A
Sbjct:    5 IAEVLPKAGLVYSEKGNLSEILCKPKIMPIKSLTLEKLEQMEQEAAA 51
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: A0A830H8T7_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H8T7_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.220e-11
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   85 ESIAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQ----LLAEKQPE 246
            +S+ E+LPK GLVYSEK  LSEVLCKPK+MP+KS+TL++LE+ E +    L A  QPE
Sbjct:    9 QSLHEILPKAGLVYSEKGNLSEVLCKPKIMPLKSVTLERLEEMEKRMQEVLAAADQPE 66
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: A0A7S2GMJ4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GMJ4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.600e-11
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   91 IAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQ--QEAQLLAE 234
            I+E+LPKNGLVYSEK +LSE+LCKPK++PIKS+ LQ LE   QEAQL AE
Sbjct:   56 ISEVLPKNGLVYSEKGSLSEILCKPKILPIKSVALQTLEDKLQEAQLDAE 105
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: A0A0M0LPT4_9EUKA (Bbsome-interacting protein 1-like protein n=2 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LPT4_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 7.290e-11
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   79 DVESIAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLE--QQEAQLLAEKQPENGLP 258
            D  ++ E+LPK GLVYSEK  LSEVLCKPK+MPIKS++L++LE  +Q+A+   +  P   +P
Sbjct:    7 DRPTLLEVLPKAGLVYSEKGNLSEVLCKPKIMPIKSVSLERLEAMEQQAENFRKSNPTTAMP 68
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: A0A2J8AHG4_9CHLO (BBSome-interacting protein 1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AHG4_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 3.090e-10
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   91 IAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQL 225
            + E+LPK GLV SEK  L+E+LCKPKLMP+KSITLQKLE+ E+++
Sbjct:    9 VKEVLPKAGLVVSEKGNLTEILCKPKLMPLKSITLQKLEEMESKI 53
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BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Match: A0A024U822_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U822_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.580e-10
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   67 NPPRDVESIAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEAQ 222
            N PR++  + E+LPK GLVYSE+  LSEVLCKPKLMPIKS+TL ++E+ E Q
Sbjct:    2 NKPREL--LQEVLPKAGLVYSERGNLSEVLCKPKLMPIKSLTLVQIEEIEKQ 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1390.3047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLR6_9PHAE7.030e-3694.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J6C882_DIALT1.580e-1273.91Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7J7PN90_9CHLO4.060e-1266.04BBSome-interacting protein 1 n=2 Tax=Scenedesmacea... [more]
J9HZC4_9SPIT4.230e-1262.50Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
A0A7S1CLD0_9STRA5.180e-1272.34Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A830H8T7_9CHLO1.220e-1160.34Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A7S2GMJ4_9STRA1.600e-1172.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0M0LPT4_9EUKA7.290e-1153.23Bbsome-interacting protein 1-like protein n=2 Tax=... [more]
A0A2J8AHG4_9CHLO3.090e-1066.67BBSome-interacting protein 1 n=1 Tax=Tetrabaena so... [more]
A0A024U822_9STRA3.580e-1063.46Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1390contigEcto-sp13_S_contig1390:8760..9458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score62.8
Seed ortholog evalue7.8e-08
Seed eggNOG ortholog5762.XP_002673144.1
Model size488
KEGG koko:K04371,ko:K19603
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.MAP kinase activity
EggNOG OGsKOG0660@1,KOG0660@2759
EC2.7.11.24
Cds size219
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.5813186-UTR-Ecto-sp13_S_contig1390:8759..89861681462741.5813186-UTR-Ecto-sp13_S_contig1390:8759..8986Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1390 8760..8986 -
1681462741.6127765-UTR-Ecto-sp13_S_contig1390:9416..94581681462741.6127765-UTR-Ecto-sp13_S_contig1390:9416..9458Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1390 9417..9458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.5938165-CDS-Ecto-sp13_S_contig1390:8986..90971681462741.5938165-CDS-Ecto-sp13_S_contig1390:8986..9097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1390 8987..9097 -
1681462741.6030638-CDS-Ecto-sp13_S_contig1390:9308..94161681462741.6030638-CDS-Ecto-sp13_S_contig1390:9308..9416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1390 9309..9416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1390.3047.1prot_Ecto-sp13_S_contig1390.3047.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1390 8987..9416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1390.3047.1

>prot_Ecto-sp13_S_contig1390.3047.1 ID=prot_Ecto-sp13_S_contig1390.3047.1|Name=mRNA_Ecto-sp13_S_contig1390.3047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MADSRVEQNPPRDVESIAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSIT
LQKLEQQEAQLLAEKQPENGLP*
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mRNA from alignment at Ecto-sp13_S_contig1390:8760..9458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1390.3047.1 ID=mRNA_Ecto-sp13_S_contig1390.3047.1|Name=mRNA_Ecto-sp13_S_contig1390.3047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1390:8760..9458- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGGGGAGCGAGACGCCCGCACTGAAGCAGCACGCGTTTTCATGGCGGA
CTCTCGTGTGGAACAAAACCCACCCCGAGATGTCGAAAGTATCGCCGAGC
TCCTCCCTAAGAATGGCCTTGTGTACAGCGAAAAGACAACCCTCAGTGAG
GTGAGATTTTCTTTCAGACAACATCGCTTGCATTAAGTATGTGGATGCAT
GGGTTTGTACGCAAAGTCGACTCTGAGTTGCGAACTGGCGCTGAGAACCT
CCGCCTAACGGGCCCCTAACGGGCGAGCAGTAAAACGACTGAATGAGTTC
GCGATTCCCCCGCACACTGTGCGGACTGTGCGTTGTTTGGTGGATGCCAC
GTGACGTGCAGGTGCTATGTAAACCGAAGCTGATGCCCATCAAGAGCATA
ACACTGCAGAAGCTGGAGCAGCAGGAGGCGCAGCTACTGGCAGAAAAGCA
GCCCGAAAATGGGCTTCCGTAGAGGCGTGAATGACTTGCAGTAGGGCTCA
GGGTGGGCAAGGCGTGGACACAAAATGCGGGGCGTACATGCGTGCCATTT
GTATGTCATGAAGAGATAAAATGCATTCCCTCTGGTGCCGTGTCGAGGCT
GTGAGACCCCGGTCTCAATAAGCAGAGAACGGGGAAAGAAATGGTGCCAC
CTGGATCAAATAGTCACAGCACACCCATGGACTCGGTTTCTCCTATTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1390:8760..9458-

>mRNA_Ecto-sp13_S_contig1390.3047.1 ID=mRNA_Ecto-sp13_S_contig1390.3047.1|Name=mRNA_Ecto-sp13_S_contig1390.3047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1390:8760..9458- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGACTCTCGTGTGGAACAAAACCCACCCCGAGATGTCGAAAGTAT
CGCCGAGCTCCTCCCTAAGAATGGCCTTGTGTACAGCGAAAAGACAACCC
TCAGTGAGGTGCTATGTAAACCGAAGCTGATGCCCATCAAGAGCATAACA
CTGCAGAAGCTGGAGCAGCAGGAGGCGCAGCTACTGGCAGAAAAGCAGCC
CGAAAATGGGCTTCCGTAG
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