mRNA_Ecto-sp13_S_contig13889.3039.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13889.3039.1
Unique NamemRNA_Ecto-sp13_S_contig13889.3039.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13889.3039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13889contigEcto-sp13_S_contig13889:2539..3434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size896
Hectar predicted targeting categoryother localisation
Exons1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.0450323-UTR-Ecto-sp13_S_contig13889:2538..26341681462741.0450323-UTR-Ecto-sp13_S_contig13889:2538..2634Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13889 2539..2634 +
1681462741.0657728-UTR-Ecto-sp13_S_contig13889:3087..34341681462741.0657728-UTR-Ecto-sp13_S_contig13889:3087..3434Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13889 3088..3434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.0555773-CDS-Ecto-sp13_S_contig13889:2634..30871681462741.0555773-CDS-Ecto-sp13_S_contig13889:2634..3087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13889 2635..3087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13889.3039.1prot_Ecto-sp13_S_contig13889.3039.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13889 2635..3087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13889.3039.1

>prot_Ecto-sp13_S_contig13889.3039.1 ID=prot_Ecto-sp13_S_contig13889.3039.1|Name=mRNA_Ecto-sp13_S_contig13889.3039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MDLTVPRLHSTGPNRLLQRYFALDSGADSSFVSAHACTSWEFVRWTIDMD
PLCSPSPTVWWCMVLIISLIRIALMLDPSQRCSNGLPVGLCGPHCACCNA
IVSCARVSRCPPVLVIGPLRHLVFCSFVSLRVRVGTHRNDSQQAGSLDRL
*
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mRNA from alignment at Ecto-sp13_S_contig13889:2539..3434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13889.3039.1 ID=mRNA_Ecto-sp13_S_contig13889.3039.1|Name=mRNA_Ecto-sp13_S_contig13889.3039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=896bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13889:2539..3434+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACGCCCGGCAATATTTGAGAGGACGCGCGGTTCGTTCCACCGAAAAA
AAATGTTGTAAAAGTAGGGTGTTGTTTTCGTTCAAGGTTGCCGTCCATGG
ACTTGACTGTCCCTCGGCTCCACTCCACCGGCCCCAACAGGCTGCTGCAG
AGATATTTCGCGCTTGATTCTGGAGCCGATTCCTCTTTCGTCTCGGCGCA
TGCATGCACAAGCTGGGAATTTGTCCGATGGACCATAGACATGGATCCAC
TGTGCTCTCCAAGTCCTACGGTGTGGTGGTGCATGGTGTTGATCATTTCA
TTGATACGCATCGCTTTGATGCTTGATCCGTCACAAAGGTGTTCGAATGG
TTTGCCCGTAGGGTTATGTGGCCCGCATTGTGCGTGTTGCAATGCGATTG
TATCGTGCGCCAGGGTGTCGCGATGCCCGCCCGTGTTGGTGATTGGTCCT
TTGCGACATTTGGTTTTCTGTAGCTTCGTCTCGCTCCGTGTGAGAGTCGG
AACGCACAGAAACGATTCGCAGCAGGCTGGCTCACTGGATCGCCTGTAGA
TATCAACGGTTATCGACGGCTGCGGCAAGAGGTCCGTCCGTGACGGCATT
TTCCTGTTCGGGAGATTTTGACTCGGTTACAAACGGAGAAAGCTCGGTTG
TAAGCGGATTAATTGCGGCGGCGGATAACCCCGCGCTGCTTCGTCGTGGG
CCTATTGGCGTTGCGTGCGCCTGCTGTTTCAGTGCGATGTTGCCAATGAG
GATGTGTATGCGTACGTGCGGTGTTGGTTCAACTTCGGGGGAACGGCGGC
GTCGCATGTTCAGGCACATGCTTCTTTGCTTGGGCGCGATTTGAACGGTA
GCACTAGTGCGGTGAGTGTGTAACATCACCCATCACACACGCAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13889:2539..3434+

>mRNA_Ecto-sp13_S_contig13889.3039.1 ID=mRNA_Ecto-sp13_S_contig13889.3039.1|Name=mRNA_Ecto-sp13_S_contig13889.3039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13889:2539..3434+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTTGACTGTCCCTCGGCTCCACTCCACCGGCCCCAACAGGCTGCT
GCAGAGATATTTCGCGCTTGATTCTGGAGCCGATTCCTCTTTCGTCTCGG
CGCATGCATGCACAAGCTGGGAATTTGTCCGATGGACCATAGACATGGAT
CCACTGTGCTCTCCAAGTCCTACGGTGTGGTGGTGCATGGTGTTGATCAT
TTCATTGATACGCATCGCTTTGATGCTTGATCCGTCACAAAGGTGTTCGA
ATGGTTTGCCCGTAGGGTTATGTGGCCCGCATTGTGCGTGTTGCAATGCG
ATTGTATCGTGCGCCAGGGTGTCGCGATGCCCGCCCGTGTTGGTGATTGG
TCCTTTGCGACATTTGGTTTTCTGTAGCTTCGTCTCGCTCCGTGTGAGAG
TCGGAACGCACAGAAACGATTCGCAGCAGGCTGGCTCACTGGATCGCCTG
TAG
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