mRNA_Ecto-sp13_S_contig13887.3038.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE) HSP 1 Score: 205 bits (522), Expect = 2.310e-59 Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 1
Query: 1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
GDVV+MKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEV QSADCKMMVHSVGE SQWGLIRATLVSEPQQTP+QEKLDNMAKLIG
Sbjct: 213 GDVVIMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVGQSADCKMMVHSVGEQSQWGLIRATLVSEPQQTPLQEKLDNMAKLIG 316
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA) HSP 1 Score: 142 bits (357), Expect = 4.570e-37 Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 1
Query: 1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAE-ADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
GDVV++K GD IPADG++F GEGVK NESGLTGEPDDL KR + ++ FL+SSC++TEV S+D K++V VG HS+WG IRATL SEP +TP+Q+KLD MA LIG
Sbjct: 262 GDVVLLKAGDSIPADGIIFEGEGVKCNESGLTGEPDDLEKRPDGSNPFLFSSCLVTEVGNSSDAKIVVTGVGTHSEWGKIRATLTSEPSETPLQQKLDVMATLIG 366
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA) HSP 1 Score: 139 bits (350), Expect = 4.010e-36 Identity = 67/105 (63.81%), Postives = 86/105 (81.90%), Query Frame = 1
Query: 1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEA-DCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
GDVV++K GD IPADG++F GEGV+SNESGLTGEPDDL KR + + F++SSC++TEV S+D K++V +VGE S+WG IRATL SEP +TP+Q KLD MA +IG
Sbjct: 242 GDVVMLKAGDSIPADGIIFEGEGVRSNESGLTGEPDDLDKRPDGKNPFVFSSCLITEVGNSSDAKILVTAVGERSEWGKIRATLTSEPTETPLQVKLDAMATMIG 346
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A482RUJ4_9ARCH (Cation_ATPase_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUJ4_9ARCH) HSP 1 Score: 117 bits (294), Expect = 2.230e-30 Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1
Query: 1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
GD++V++ GD IPAD +L VKSNES LTGEPDDL K+ + DCFL SSC++TE DCK +V +G HSQWG I+A LVSE TP+Q+KL++MA ++
Sbjct: 156 GDILVLQAGDSIPADCVLIDRSVVKSNESSLTGEPDDLKKQKDKDCFLLSSCLITE---GEDCKALVIGIGTHSQWGKIKANLVSEAVNTPLQDKLEDMATMVS 256
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A7S3HTD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTD8_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.040e-28 Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query: 1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
GD++V++ GD IPAD +LF + V +NES LTGEPDDL K DCFL SSC++TE +C+ +V +G HSQWG I+A LV+E TP+Q+KL+ M K +G
Sbjct: 190 GDILVLQAGDAIPADSILFTKDFVLANESSLTGEPDDLKKNHAKDCFLLSSCLVTE---GEECRALVIGIGMHSQWGKIKANLVTETVNTPLQDKLEEMTKQVG 290
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A482SLW1_9ARCH (Cation_ATPase_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLW1_9ARCH) HSP 1 Score: 112 bits (280), Expect = 2.240e-28 Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query: 1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
GD+VV++ GD IPAD ++ V +NES LTGEPDDL K+ + DCFL SSC++TE DC+ +V +G SQWG I+A LVSE TP+Q+KL++MAK +
Sbjct: 160 GDIVVLQAGDAIPADSIILDKVVVLANESSLTGEPDDLKKQRDKDCFLLSSCLITE---GEDCRALVIGIGTRSQWGKIKANLVSESVNTPLQDKLEDMAKFVS 260
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A7S2VWE4_9STRA (Calcium-transporting ATPase n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWE4_9STRA) HSP 1 Score: 115 bits (288), Expect = 9.280e-28 Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1
Query: 1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
GDVV +K GDGIPADG++F G GVK NES LTGEPDDL K + D F SS ++T+ S D K++ +G++SQWG I+A LV E TP+QE+L+ M LIG
Sbjct: 220 GDVVSLKSGDGIPADGVMFEGGGVKCNESALTGEPDDLKKDLKNDPFFLSSTVVTDTGTSGDAKVICVGIGKNSQWGKIKANLVVEEVNTPLQERLEEMVTLIG 323
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A7S3HT93_9STRA (Calcium-transporting ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT93_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.270e-27 Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query: 1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
GD++V++ GD IPAD +LF + V +NES LTGEPDDL K DCFL SSC++TE +C+ +V +G HSQWG I+A LVSE TP+Q+KL+ M K +G
Sbjct: 190 GDILVLQAGDAIPADSILFTKDFVLANESSLTGEPDDLKKNHAKDCFLLSSCLVTE---GEECRALVIGIGMHSQWGKIKANLVSEAVNTPLQDKLEEMTKQVG 290
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: A0A482SLK7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLK7_9ARCH) HSP 1 Score: 105 bits (263), Expect = 1.410e-27 Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 7 VVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMA 300
++V++ GD IPAD +L V SNES LTGEPDDL K + DCFL SSC++TE DCK +V +G SQWG I+A LV+E TP+Q+KL+NMA
Sbjct: 7 ILVLQAGDSIPADCILIDKAVVLSNESSLTGEPDDLKKTRDKDCFLLSSCLITE---GEDCKALVIGIGTRSQWGKIKANLVTEAVNTPLQDKLENMA 101
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Match: W7TSK5_9STRA (Calcium-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSK5_9STRA) HSP 1 Score: 113 bits (282), Expect = 5.990e-27 Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 1
Query: 1 GDVVVMKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTEVSQSADCKMMVHSVGEHSQWGLIRATLVSEPQQTPMQEKLDNMAKLIG 312
GD++ +K GDGIPADG+L G+GVK NES LTGEP+DL K+ + D FL SS +LT+ S + + V +VG SQWG IRA LV + TP+QEKL++ A +IG
Sbjct: 204 GDLIKLKAGDGIPADGILVDGDGVKVNESSLTGEPEDLLKKVDKDPFLLSSSLLTDQGSSPEIFIFVIAVGPRSQWGKIRANLVQDSTPTPLQEKLEHAATVIG 307 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13887.3038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13887.3038.1 >prot_Ecto-sp13_S_contig13887.3038.1 ID=prot_Ecto-sp13_S_contig13887.3038.1|Name=mRNA_Ecto-sp13_S_contig13887.3038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp MKPGDGIPADGLLFAGEGVKSNESGLTGEPDDLTKRAEADCFLYSSCMLTback to top mRNA from alignment at Ecto-sp13_S_contig13887:2078..3344- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13887.3038.1 ID=mRNA_Ecto-sp13_S_contig13887.3038.1|Name=mRNA_Ecto-sp13_S_contig13887.3038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13887:2078..3344- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13887:2078..3344- >mRNA_Ecto-sp13_S_contig13887.3038.1 ID=mRNA_Ecto-sp13_S_contig13887.3038.1|Name=mRNA_Ecto-sp13_S_contig13887.3038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13887:2078..3344- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |