mRNA_Ecto-sp13_S_contig13887.3037.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13887.3037.1
Unique NamemRNA_Ecto-sp13_S_contig13887.3037.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.380e-43
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 1
Query:    1 LDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDKIVRGADIKQ 276
            L+RVVEAFIIGVTIVV     GLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDKIVRGADIK+
Sbjct:  344 LERVVEAFIIGVTIVV-----GLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDKIVRGADIKR 430          
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.940e-39
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 1
Query:    1 LDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDKIV 255
            L R+VEAFII VTI+VVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLT NQMT VEGWF DK V
Sbjct:  374 LQRIVEAFIICVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTMNQMTVVEGWFGDKQV 458          
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: A0A812UDP3_SYMMI (ACA6 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UDP3_SYMMI)

HSP 1 Score: 138 bits (348), Expect = 2.380e-37
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    1 LDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDK 249
            LD  VEAFII VTI+VVAIPEGLPLAVTISLAYST+KMY+DQN IRVLAACETMGNATN+CSDKTGTLTEN+MT VE W +DK
Sbjct:  156 LDGFVEAFIIAVTIIVVAIPEGLPLAVTISLAYSTKKMYEDQNFIRVLAACETMGNATNLCSDKTGTLTENRMTVVEAWMADK 238          
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.790e-37
Identity = 74/85 (87.06%), Postives = 76/85 (89.41%), Query Frame = 1
Query:    1 LDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDKIV 255
            L   V+AFII VTI+VVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLT NQMT VEGWF D  V
Sbjct:  394 LQGFVDAFIIAVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTMNQMTVVEGWFGDNHV 478          
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: A0A7S2STW0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STW0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.370e-36
Identity = 68/81 (83.95%), Postives = 78/81 (96.30%), Query Frame = 1
Query:    4 DRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSD 246
            +R+V+AFII +TI+VVAIPEGLPLAVTISLAYST+KMYK++NLIRVLAACETMGNATNICSDKTGTLTE +M+ VEGWFSD
Sbjct:  356 NRIVDAFIIAITIIVVAIPEGLPLAVTISLAYSTKKMYKEKNLIRVLAACETMGNATNICSDKTGTLTEGRMSVVEGWFSD 436          
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: W7TSK5_9STRA (Calcium-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSK5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.480e-35
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    4 DRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGW-----FSDKIVRGADIK 273
              ++ AFII VTI+VVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTEN+MT VE W     + D    G+++K
Sbjct:  343 SELINAFIIAVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENRMTVVELWAGGQVYMDMKAAGSELK 437          
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: A0A482SEH8_9ARCH (HAD family hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEH8_9ARCH)

HSP 1 Score: 132 bits (333), Expect = 4.660e-34
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   13 VEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDKIV 255
            V+AFII VTIVVV+IPEGLPLAVT++LAYST+KMY+DQ  IRVLAACETMGNATNICSDKTGTLTEN+MT VEGWF+D  V
Sbjct:   29 VKAFIIAVTIVVVSIPEGLPLAVTLALAYSTKKMYQDQCFIRVLAACETMGNATNICSDKTGTLTENRMTVVEGWFADTAV 109          
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: A0A7S3HU55_9STRA (P-type Ca(2+) transporter (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HU55_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.880e-33
Identity = 65/83 (78.31%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 DRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDKI 252
            + V++AFI+GVTIVVVA+PEGLPLAVT+SLAYST+KM  D NLIRVLAACETMGNATNICSDKTGTLT+N+MT VEGW + K+
Sbjct:  305 EYVLKAFIMGVTIVVVAVPEGLPLAVTLSLAYSTQKMMLDNNLIRVLAACETMGNATNICSDKTGTLTQNRMTVVEGWVAGKL 387          
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: A0A7S3Y3V0_HETAK (Calcium-transporting ATPase n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3V0_HETAK)

HSP 1 Score: 130 bits (327), Expect = 3.110e-33
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   10 VVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFS 243
            V+ AFI+ VTIVVVAIPEGLPLAVTI+LAYS+RKMY+DQNLIR LAACETMGNAT ICSDKTGTLTENQMT V GWF+
Sbjct:  323 VIHAFIMAVTIVVVAIPEGLPLAVTIALAYSSRKMYEDQNLIRTLAACETMGNATTICSDKTGTLTENQMTVVAGWFA 400          
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Match: A0A7R9VZT2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZT2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.590e-33
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1
Query:   16 EAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATNICSDKTGTLTENQMTAVEGWFSDK 249
            +AFIIGVTIVVVA+PEGLPLAVTISLAYST+KM  DQNLIR LAACETMGNATNICSDKTGTLTEN+MT V+G F++K
Sbjct:   45 DAFIIGVTIVVVAVPEGLPLAVTISLAYSTKKMLADQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVKGVFANK 122          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13887.3037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE6_9PHAE2.380e-4392.39Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZLB8_9STRA1.940e-3990.59Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A812UDP3_SYMMI2.380e-3784.34ACA6 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A835ZDK6_9STRA2.790e-3787.06Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A7S2STW0_9STRA2.370e-3683.95Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
W7TSK5_9STRA7.480e-3574.74Calcium-transporting ATPase n=2 Tax=Monodopsidacea... [more]
A0A482SEH8_9ARCH4.660e-3482.72HAD family hydrolase n=1 Tax=archaeon TaxID=190666... [more]
A0A7S3HU55_9STRA1.880e-3378.31P-type Ca(2+) transporter (Fragment) n=1 Tax=Spume... [more]
A0A7S3Y3V0_HETAK3.110e-3384.62Calcium-transporting ATPase n=5 Tax=Heterosigma ak... [more]
A0A7R9VZT2_9STRA3.590e-3384.62Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13887contigEcto-sp13_S_contig13887:210..1750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score177.2
Seed ortholog evalue3.6e-42
Seed eggNOG ortholog2880.D7G3Y5
Model size276
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0204@2759
EC3.6.3.8
Cds size276
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462740.9350863-CDS-Ecto-sp13_S_contig13887:209..2931681462740.9350863-CDS-Ecto-sp13_S_contig13887:209..293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13887 210..293 -
1681462740.9482484-CDS-Ecto-sp13_S_contig13887:841..9701681462740.9482484-CDS-Ecto-sp13_S_contig13887:841..970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13887 842..970 -
1681462740.9582083-CDS-Ecto-sp13_S_contig13887:1687..17501681462740.9582083-CDS-Ecto-sp13_S_contig13887:1687..1750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13887 1688..1750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13887.3037.1prot_Ecto-sp13_S_contig13887.3037.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13887 210..1750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13887.3037.1

>prot_Ecto-sp13_S_contig13887.3037.1 ID=prot_Ecto-sp13_S_contig13887.3037.1|Name=mRNA_Ecto-sp13_S_contig13887.3037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
LDRVVEAFIIGVTIVVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAA
CETMGNATNICSDKTGTLTENQMTAVEGWFSDKIVRGADIKQ
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mRNA from alignment at Ecto-sp13_S_contig13887:210..1750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13887.3037.1 ID=mRNA_Ecto-sp13_S_contig13887.3037.1|Name=mRNA_Ecto-sp13_S_contig13887.3037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1541bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13887:210..1750- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGACAGGGTGGTCGAGGCTTTCATCATCGGTGTCACCATCGTGGTGGT CGCCATCCCCGAGGTGATTTTTTGTTGTTGTTTTGTCTACATAAGAGAAC CGTTCCGGTGTCCTCTCTGTCTATCCAGCACCTTCATGTTTCCGTACTGG TGTACCACTGACGCGGTCGATTCCGGTTGTCACAGACGAACTTACCCTAC AAAAGGAAAAGTCTCAAATATGGTGTATAACGTGATGTCTTTCACGCAAA TATTTGTGGGTACATGGGCATGGCAAGTAGGTATTTCAGTGTTAACTGCT AATGGTATTCTACTGCTTCAGCATGAAGCCTCTCGTTTTTCATCTCGAGC TCGGTCAGCTTCTGGCGTCTCCTCGTCGTCTCTTTCCACCCTAGCCTCTA GTCCTACGTGCTGCATCCCCTTGAGCTTTGTCCAAAGTGACCCTCGCTTT TTCCGTTCGAGCGCCACCGCCGCCGTCGATTCGCTTGCATGCCTGTGGCC CGGAGCGTTCTTCCTGCCGACTCGCGTTGTTTGCTGTTGTCTTCACTTTC ACACAGCAGTTGCGACCCCTGCTCACTACGTCATGACTTACATGCGTAAC CTGTGTGTGGCTGTTGTTGCTGTTGTGTTTACACGATCAAAACCGTTTTC ATCTCTGCTCACGTCCCTGCCCATCTGGCGCTAATAGATACCTTGCGTGC CCACAGGCGAGATTCAACTAAGTGTACCTTCGACACATGGAACTTTTGTT TATCGGCGTGCATGTTCTGTTTTCGTGCAGGGGCTTCCACTTGCCGTAAC GATTTCGCTGGCGTACTCGACGAGGAAGATGTACAAGGACCAGAACCTCA TCCGCGTGCTGGCCGCGTGCGAGACCATGGGCAACGCCACCAACATCTGC TCAGACAAGGTATGTCCCCTGGTGCTGGTGTGGGCTTTTGTTCGGCAGAC CGGCGTATTACACTACATCGAAGCCCCCCGACAAGCGAAGGCTTGAGATG AAGGCACGTTGTCAGAGCACGCACGCCCCCCCCCCCCCCCCCCCCCGCAC CTAACGCCTTGAGGTCTAAGTACAATNNNNNNNNNNCTTGAGATGAAGGC ACGTTGTCAGAGCACGCACGCCCCCCTCCCCCCCCCTCCGGCAAACAAGG GCTTGAGATAGAGGCACATTGCCAGAGCACGATGGTGGGCCCTTGCCCCT CGAGTCAAGTTGAAAAGCCATAACCGAAGAGGTTTCAGGTTTCACACCAG GTCGCCATGTAGTCGGAGATGGTACACGGCAGGCATGTGTTACGATTTTG TGGTTGTTATGCCGATGATTTTATTCGTTTTAGAATATGTCTTTACACCA TTTCGACGAGTACCACAAGTTGTGATGTTGAGGGCTCTGCGATGCGATGA GTCTCCTCAGCACCGTACAAACAAAACATAGATTGTACGTCTCATTTTTT TTTGCAGACCGGGACCCTTACGGAGAACCAGATGACCGCCGTGGAGGGTT GGTTCTCGGACAAGATTGTACGTGGCGCTGACATCAAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13887:210..1750-

>mRNA_Ecto-sp13_S_contig13887.3037.1 ID=mRNA_Ecto-sp13_S_contig13887.3037.1|Name=mRNA_Ecto-sp13_S_contig13887.3037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13887:210..1750- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGACAGGGTGGTCGAGGCTTTCATCATCGGTGTCACCATCGTGGTGGT
CGCCATCCCCGAGGGGCTTCCACTTGCCGTAACGATTTCGCTGGCGTACT
CGACGAGGAAGATGTACAAGGACCAGAACCTCATCCGCGTGCTGGCCGCG
TGCGAGACCATGGGCAACGCCACCAACATCTGCTCAGACAAGACCGGGAC
CCTTACGGAGAACCAGATGACCGCCGTGGAGGGTTGGTTCTCGGACAAGA
TTGTACGTGGCGCTGACATCAAGCAG
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