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Homology
BLAST of mRNA_Ecto-sp13_S_contig13886.3036.1 vs. uniprot
Match: D7G4M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M6_ECTSI) HSP 1 Score: 548 bits (1413), Expect = 3.480e-193 Identity = 322/387 (83.20%), Postives = 327/387 (84.50%), Query Frame = 1
Query: 121 MCGKVLDPGSEDKSKDAAAADDTAAEGQSTPEESHGRRKGLGHQFSSGNSDGYSDAGAVDSMDPDMAGGLWRGSSGDFEKGRPVPSGFWRRHSKGRLSWSDDYQGGCLAEYYEDERSRMVSESSSVPPGDTDVSTSAEXXXXXXXXXXXXXXXXXXXATGSRADGCIVQSCRSQGERSSTAAASPDTNTPKQPKKGSEPPGLFMGQDEDGEVFHSALQLADEDDDLEGREGGCAALVRRDTFYGDVQ------------EKLEDRSVRVSAAKGGSGXXXXASSLGGEPAKHEQSEGSGCXXXXXXXXXXGDTGVAAGSGGGTGTPTAGTSPGTWSPQWGWYVTMTPPQDQYPAQQFPIPGAKPPTPTASATASDVPTSAKGRPPRP 1245
MCGKVLDPGSEDKSKDAAAAD TAAEGQSTPEESHGRRKGLGHQFSSGNSDG SDAGAVDSMDPDMA GLWRGSSGDFEKGRPVP GFWRRHSKGRLSWSDDYQGGCLAEYYEDERSRMVSESSSVPPGDTDVSTSA XXXXXXXXXXXXXX AD CI ASP N KQP+KGSEPPGL GQDEDG+VFHSALQL DEDDDL G +GGCAALVRRDTFYGDVQ EK+EDR+VR SAAKGGSG ASSLGGEPAKHEQSEGSGCXXXXXXXXXXGDTGVAA SGGGTGTPTAGTSPGTWSPQWGWYVTMTPPQDQYPAQQFPIPGAKPPTPTASA ASDV TSAKGRPPRP
Sbjct: 1 MCGKVLDPGSEDKSKDAAAADATAAEGQSTPEESHGRRKGLGHQFSSGNSDGNSDAGAVDSMDPDMAEGLWRGSSGDFEKGRPVPPGFWRRHSKGRLSWSDDYQGGCLAEYYEDERSRMVSESSSVPPGDTDVSTSAPAAGVXXXXXXXXXXXXXX------ADSCIXXXXXXXXXXXXXXXASPSPNATKQPEKGSEPPGLSTGQDEDGDVFHSALQLVDEDDDLGGLDGGCAALVRRDTFYGDVQIPPMRVLDSPSQEKMEDRNVRFSAAKGGSGGGAAASSLGGEPAKHEQSEGSGCXXXXXXXXXXGDTGVAADSGGGTGTPTAGTSPGTWSPQWGWYVTMTPPQDQYPAQQFPIPGAKPPTPTASAAASDVHTSAKGRPPRP 381
BLAST of mRNA_Ecto-sp13_S_contig13886.3036.1 vs. uniprot
Match: A0A6H5JYV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV7_9PHAE) HSP 1 Score: 496 bits (1276), Expect = 4.800e-173 Identity = 293/337 (86.94%), Postives = 302/337 (89.61%), Query Frame = 1
Query: 235 KGLGHQFSSGNSDGYSDAGAVDSMDPDMAGGLWRGSSGDFEKGRPVPSGFWRRHSKGRLSWSDDYQGGCLAEYYEDERSRMVSESSSVPPGDTDVSTSAEXXXXXXXXXXXXXXXXXXXATGSRADGCIVQSCRSQGERSSTAAASPDTNTPKQPKKGSEPPGLFMGQDEDGEVFHSALQLADEDDDLEGREGGCAALVRRDTFYGDVQEKLEDRSVRVSAAKGGSGXXXXASSLGGEPAKHEQSEGSGCXXXXXXXXXXGDTGVAAGSGGGTGTPTAGTSPGTWSPQWGWYVTMTPPQDQYPAQQFPIPGAKPPTPTASATASDVPTSAKGRPPRP 1245
+GLGHQFSSGNSDG S+AG VDSMD DMAGGL RGSSGDFE GRPVP GFWRRHSKGRLSWSDDYQGGCLAEYYEDERSRMVSESSSVPPGDTDVSTSAEXXXXXXXXXXXXXX +TGSRAD IVQSCRS+ SS AAASPD NTPKQP+KGSE PGLFMGQD+DGEVFHSALQLA EDDDLEG +GGCAALV RDTFYGDVQEK+EDRSVRVS A XXXX SLGGEPAKHEQSEGSGC XXXXXXXXGDTGV AGSGGGTGTPTAGTSPGTWSPQWGWYVTMTPPQDQYP QQFPIPGAKPPTPTASA ASDVPTSAKGRPP+P
Sbjct: 5 EGLGHQFSSGNSDGDSNAGDVDSMDLDMAGGLLRGSSGDFENGRPVPPGFWRRHSKGRLSWSDDYQGGCLAEYYEDERSRMVSESSSVPPGDTDVSTSAEXXXXXXXXXXXXXXEG---STGSRADSRIVQSCRSKVGGSSAAAASPDPNTPKQPEKGSEHPGLFMGQDQDGEVFHSALQLA-EDDDLEGLDGGCAALVHRDTFYGDVQEKMEDRSVRVSIAGXXXXXXXXXXSLGGEPAKHEQSEGSGCRGXXXXXXXXGDTGVVAGSGGGTGTPTAGTSPGTWSPQWGWYVTMTPPQDQYPTQQFPIPGAKPPTPTASAAASDVPTSAKGRPPKP 337
BLAST of mRNA_Ecto-sp13_S_contig13886.3036.1 vs. uniprot
Match: A0A6H5JWX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX8_9PHAE) HSP 1 Score: 102 bits (253), Expect = 3.120e-20 Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 1
Query: 70 SGLIWVQKHPVLAAVIWMCGKVLDPGSEDKSKDAAAADDTAAEGQSTPEESHGRRKGL 243
GLIWVQKHPVLAAVIWMCGKVLDPG DKSKDAAAAD TAAEGQSTP+ESHGRRKG
Sbjct: 289 DGLIWVQKHPVLAAVIWMCGKVLDPGP-DKSKDAAAADATAAEGQSTPKESHGRRKGA 345
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 1249 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Cds size | 1248 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462740.8383706-CDS-Ecto-sp13_S_contig13886:543..660 | 1681462740.8383706-CDS-Ecto-sp13_S_contig13886:543..660 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13886 544..660 - |
| 1681462740.848308-CDS-Ecto-sp13_S_contig13886:1041..1199 | 1681462740.848308-CDS-Ecto-sp13_S_contig13886:1041..1199 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13886 1042..1199 - |
| 1681462740.8577244-CDS-Ecto-sp13_S_contig13886:1940..2052 | 1681462740.8577244-CDS-Ecto-sp13_S_contig13886:1940..2052 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13886 1941..2052 - |
| 1681462740.8691308-CDS-Ecto-sp13_S_contig13886:2250..2652 | 1681462740.8691308-CDS-Ecto-sp13_S_contig13886:2250..2652 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13886 2251..2652 - |
| 1681462740.878518-CDS-Ecto-sp13_S_contig13886:2811..2913 | 1681462740.878518-CDS-Ecto-sp13_S_contig13886:2811..2913 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13886 2812..2913 - |
| 1681462740.8872619-CDS-Ecto-sp13_S_contig13886:3535..3654 | 1681462740.8872619-CDS-Ecto-sp13_S_contig13886:3535..3654 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13886 3536..3654 - |
| 1681462740.897689-CDS-Ecto-sp13_S_contig13886:3875..3981 | 1681462740.897689-CDS-Ecto-sp13_S_contig13886:3875..3981 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13886 3876..3981 - |
| 1681462740.9059992-CDS-Ecto-sp13_S_contig13886:4447..4579 | 1681462740.9059992-CDS-Ecto-sp13_S_contig13886:4447..4579 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13886 4448..4579 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13886.3036.1 >prot_Ecto-sp13_S_contig13886.3036.1 ID=prot_Ecto-sp13_S_contig13886.3036.1|Name=mRNA_Ecto-sp13_S_contig13886.3036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=416bp
QSDPCVFVRFPFSVPSVWLWRQTSGLIWVQKHPVLAAVIWMCGKVLDPGS EDKSKDAAAADDTAAEGQSTPEESHGRRKGLGHQFSSGNSDGYSDAGAVD SMDPDMAGGLWRGSSGDFEKGRPVPSGFWRRHSKGRLSWSDDYQGGCLAE YYEDERSRMVSESSSVPPGDTDVSTSAESAAGAAAAAAAAAREEGGGATG SRADGCIVQSCRSQGERSSTAAASPDTNTPKQPKKGSEPPGLFMGQDEDG EVFHSALQLADEDDDLEGREGGCAALVRRDTFYGDVQEKLEDRSVRVSAA KGGSGGGAAASSLGGEPAKHEQSEGSGCRGGRGGGAAAGDTGVAAGSGGG TGTPTAGTSPGTWSPQWGWYVTMTPPQDQYPAQQFPIPGAKPPTPTASAT ASDVPTSAKGRPPRP* back to topmRNA from alignment at Ecto-sp13_S_contig13886:544..4579- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig13886.3036.1 ID=mRNA_Ecto-sp13_S_contig13886.3036.1|Name=mRNA_Ecto-sp13_S_contig13886.3036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13886:544..4579- (Ectocarpus species13 EcNAP12_S_4_19m) CAAAGTGACCCTTGTGTTTTTGTCCGTTTCCCTTTCTCCGTTCCGTCCGT
GTGGCTATGGCGACAAACATCAGGTCTGATTTGGGTACAGAAGCACCCGG
TGCTTGCAGCGGTGATCTGGATGTGCGGAAAGGTGACGTTATCATAAGAA
AGAAAATTAGGACGTCAACAGTCTGCAGACTTCTACGCGCAAGTGTTTGG
CGTGACGGATACCTTTTTCACTAGTGAGCTATGAACGCTAGCTAGCAGTC
GAGCAGGTGCAGGATCCCCACCCTCCGCGTTCTTCGACGAAGAAGCCGTA
CAGCGATAAGGGTATCTACAAAGCGGCGACACATTTCTGACCAACCTCGT
GTACTTGACCGTATCCGCAACCTCAGCTAATCGGACCCTTGCCTCATCAT
ATCCACGTCCCCCGCCTGTGCTGTTTGTCATGGCCAAGCCGGTAGCATAG
CAACCCTTCTGCTCCATTCATAATCGTTCCGTTGCCTTGGGTTAGCCCAA
TGGTTGCGAACAATAGCTGAACGATGTTGTTCGGCGATTGGTCTCAATAA
AGAGAACGATCGGCACCCACAAGCGTGTGTACTCGAAACCATCTCCAGGT
TCTCGACCCCGGCTCGGAAGACAAGTCAAAAGATGCTGCTGCAGCTGACG
ATACAGCAGCTGAAGGACAGTCAACACCCGAAGAAAGCCATGGCCGACGA
AAAGGTGCACTCTTTGACATGAAATCACTCAAGGTTGTTCAGGACTGGAT
TGATGTGGTACTCCTCTGGTTTTTGCGAGATGCCCTGGAATCATTTATGC
CCTACTTTTTGCTGCCTGATATTCTCAACATGTGCCCGTGATTGCTGCTG
TATTGTTTCTCTGGGCTCAGAAAATCCCGTGCCCCTCCCCATGTCACCGT
TCTCTCTGTTTGATGCTCTCGGAAGGTTTAGGGCACCAGTTCTCGTCAGG
CAACAGTGATGGCTATTCGGATGCTGGTGCTGTTGACAGCATGGATCCAG
ACATGGCCGGAGGGCTGTGGAGAGGGTCTTCTGGTGATTTCGAGGTAGGG
TGTAGGGTGTAGGGTGCGGCATGTGTGAAGATGATGATGAGCTAGAGTAT
CTGAAGGGGCCAAGCGGACACTGGGGTTTTCCTTGACCATTGTTTTCTCC
AAGGAATACAGGGGTACTCAGGCATTCATGGCTGCGTAGCTCTGGTTTGG
CATGATGAATTGGACAGGAAAAGGCTTATGCAGTGCCGGTCACGACAAGC
CGTTTCAGTGCCTTCGTGAGAGTACTTTGGCCATGGATATGGTCGTGCTT
GTGTGCTTCACTCTTTTTGTTCCAGGTAATGCCTCGAAACTCGATCCACG
TGATGGGGAAGGGCATTGCTTTTCCTCTCTTGCTCCTTCCGACGATACCA
GTTCTCGAGGAGGGTTGGGGTCTAGCATTTAGTATTGAATCTGACCTTGT
GGCCTTACAGTTTCAGAACGACCGTGGGGCAGACACATTTACGTAGGGCT
TGGCGTGGGGCACATGCGAGCAGCTTTCGCAAGCTCTGGCAAACGATAAC
ATACTTCTGCATGCTGCTATTGTCCGTTGTCCAGCTGAGGGGTAGCGTTT
TCCGTGGTGCTTTTGGCGATTTTCTTGACTGGTGCAACTTGCCTGAACGT
CGATCGATGGTTTCAGAAAGGGAGACCCGTGCCTTCAGGGTTTTGGCGAC
GGCATTCCAAGGGCCGTCTCAGCTGGAGCGACGACTACCAGGGCGGCTGC
CTCGCAGAATACTACGAGGTGGGTACAGCAGCACAACTCGGCCTTACATT
ACTTTGGAGAAAGGGTAAGGGTAGGCCAGCAATATGTTTGTGTTTTTCTT
TCCGCGTACTCTTTGGAGGGAAATGGATAGCCCGAAGTCGCCTCCTGACG
CAATTGCGTACATTTATCTTGCCTCAGGATGAGCGAAGCCGGATGGTGTC
GGAAAGCTCCAGCGTTCCACCTGGCGACACGGACGTGTCAACATCCGCAG
AATCAGCAGCAGGAGCAGCAGCAGCAGCAGCGGCAGCAGCAAGAGAGGAA
GGAGGAGGAGCGACAGGATCCAGAGCGGACGGTTGTATCGTCCAATCGTG
CCGTTCGCAAGGTGAACGGAGTTCGACAGCGGCAGCATCGCCCGATACTA
ACACCCCCAAACAGCCGAAGAAGGGTTCCGAACCGCCTGGGCTATTCATG
GGGCAGGATGAAGATGGTGAGGTGTTCCACAGCGCTCTCCAGCTCGCCGA
CGAAGACGACGACTTGGAAGGGCGGGAAGGCGGGTGTGCTGCGCTGGTCC
GCCGCGACACATTCTACGGAGACGTGCAGGTTTGAACAAGGAGGATGAAT
CGCGGAGTTTCGATTGCCTTACAACGTTCTGTGTGGGTCTACTGGCTTGA
GTTATATCCGCCAATGGTTGTCGAAACCGAGGTTGATTGCACTGGTTGCA
AGTCCACGTTGTTGCGTTTGATATTCTAGACATTACTGCAGATCCCGCCA
ATGAGAGTCCTTGATTCACCCTCGCAGGAGAAGTTGGAGGACAGAAGCGT
GCGTGTCAGCGCAGCAAAGGGAGGGAGCGGTGGTGGAGCGGCAGCTTCCT
CACTTGGCGGAGAACCGGCCAAGCACGAGCAGAGCGAAGGTACACTTACA
CATATCGTTGTATATCTTTTTTTCCGAGTCTGTACCAGATGCCGAGGGGA
TGCACGAGCTATCCGTCACTCGTCCTTGTGTTTGTTCTTTTCTATGCATT
ACGAATTGAATTTTGTACCAAGCTTTCTGTCCGTTTTACTAGGGTAATCC
AACGCTAGCCATCCGAGGGTTATCCAACCCCTTGCAATCATCGGGTCATC
TTTAGAGGGACACCATTTTTTGGATACACCGCAGAGAGGCAGGAACGTGT
GCAAAACTACATAATGTGCGACAGACTCAAACATCGGCGACACAGGCTTA
GCCTCATACAACGGACCGAGAATTTGGTAGTTGCTACGAGACGGGCTCGT
GCACCGTGTTTGACATATACACATGTGGCCTTACCGAAATCCGGAGGGTC
CCGAGGGCCTTCACGAAGTACGGAGGGTCCCGTCTGGATCCAAGGACATG
TATCGCATGAGCACCAGCTATATCGGGGATACAGTTGCTACTAACGCGTG
CGGTGCTGATCATGATATCGAAGCTACGGCGGTTTGTGAGTGTATGGATA
CAACAGTGGTGTACGAGGGGAAACGTGTGGTACACCAAGCTTCCGGACCC
ACACGGCCCCCTGTTGGTGCTTTCTTTCCCTGCTGTGGCACGTCCCTTCC
CTTGACCATTCCTTCACGAACACTTACGCCGTTAGCCAGCAGAATTGGCC
TTCATTTTGCATCTCATTCCGTTACCGCAGGGAGCGGGTGTCGAGGAGGA
CGAGGAGGAGGAGCGGCGGCTGGTGACACCGGTGTCGCAGCGGGTAGCGG
TGGCGGTACGGGGACGCCGACGGCCGGGACCAGTCCGGGTACCTGGTCTC
CTCAGTGGGGGTGGTACGTCACCATGACCCCCCCGCAGGTGATGTTTGGT
GTTGGTGTTGCTTGTGTTACGTGATTCCTTAATCTTGGTGTTTGATTTTA
TCTCTCAAAAACAAACGATTGTTCTTACACATTTTGCCACCTATTCAGGT
CGGGCATGGTCCTTCCTCTGTTTCGATCTCATGCTATGCTCTCCGTCGCC
TATCTGAGATCCCGACGCACTCATCACCCTTTTCTGGTAGATAGTATTGA
GGCCTCTGGCACATGTGACGCCGGTTATAACCAAGGTATCTACGCGCTTA
TTGTCGTTGGCTTCCATGGCACGAAACCTACCTTGGTCTCTAGACTTTAG
CATATGGTATAGAAATACATTCCGTCTTTCGCTGGATGTTCTTGTCCGCT
GTTGTTGTACGGTTGACAGGATCAATACCCAGCCCAGCAGTTCCCGATTC
CCGGTGCCAAGCCTCCAACGCCAACCGCATCTGCCACAGCATCCGACGTG
CCCACTTCAGCCAAGGGGCGTCCGCCTAGACCCTGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig13886:544..4579- >mRNA_Ecto-sp13_S_contig13886.3036.1 ID=mRNA_Ecto-sp13_S_contig13886.3036.1|Name=mRNA_Ecto-sp13_S_contig13886.3036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1248bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13886:544..4579- (Ectocarpus species13 EcNAP12_S_4_19m) CAAAGTGACCCTTGTGTTTTTGTCCGTTTCCCTTTCTCCGTTCCGTCCGT GTGGCTATGGCGACAAACATCAGGTCTGATTTGGGTACAGAAGCACCCGG TGCTTGCAGCGGTGATCTGGATGTGCGGAAAGGTTCTCGACCCCGGCTCG GAAGACAAGTCAAAAGATGCTGCTGCAGCTGACGATACAGCAGCTGAAGG ACAGTCAACACCCGAAGAAAGCCATGGCCGACGAAAAGGTTTAGGGCACC AGTTCTCGTCAGGCAACAGTGATGGCTATTCGGATGCTGGTGCTGTTGAC AGCATGGATCCAGACATGGCCGGAGGGCTGTGGAGAGGGTCTTCTGGTGA TTTCGAGAAAGGGAGACCCGTGCCTTCAGGGTTTTGGCGACGGCATTCCA AGGGCCGTCTCAGCTGGAGCGACGACTACCAGGGCGGCTGCCTCGCAGAA TACTACGAGGATGAGCGAAGCCGGATGGTGTCGGAAAGCTCCAGCGTTCC ACCTGGCGACACGGACGTGTCAACATCCGCAGAATCAGCAGCAGGAGCAG CAGCAGCAGCAGCGGCAGCAGCAAGAGAGGAAGGAGGAGGAGCGACAGGA TCCAGAGCGGACGGTTGTATCGTCCAATCGTGCCGTTCGCAAGGTGAACG GAGTTCGACAGCGGCAGCATCGCCCGATACTAACACCCCCAAACAGCCGA AGAAGGGTTCCGAACCGCCTGGGCTATTCATGGGGCAGGATGAAGATGGT GAGGTGTTCCACAGCGCTCTCCAGCTCGCCGACGAAGACGACGACTTGGA AGGGCGGGAAGGCGGGTGTGCTGCGCTGGTCCGCCGCGACACATTCTACG GAGACGTGCAGGAGAAGTTGGAGGACAGAAGCGTGCGTGTCAGCGCAGCA AAGGGAGGGAGCGGTGGTGGAGCGGCAGCTTCCTCACTTGGCGGAGAACC GGCCAAGCACGAGCAGAGCGAAGGGAGCGGGTGTCGAGGAGGACGAGGAG GAGGAGCGGCGGCTGGTGACACCGGTGTCGCAGCGGGTAGCGGTGGCGGT ACGGGGACGCCGACGGCCGGGACCAGTCCGGGTACCTGGTCTCCTCAGTG GGGGTGGTACGTCACCATGACCCCCCCGCAGGATCAATACCCAGCCCAGC AGTTCCCGATTCCCGGTGCCAAGCCTCCAACGCCAACCGCATCTGCCACA GCATCCGACGTGCCCACTTCAGCCAAGGGGCGTCCGCCTAGACCCTGA back to top
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