mRNA_Ecto-sp13_S_contig13883.3034.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13883.3034.1
Unique NamemRNA_Ecto-sp13_S_contig13883.3034.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: A0A6H5KGY0_9PHAE (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGY0_9PHAE)

HSP 1 Score: 592 bits (1527), Expect = 1.290e-209
Identity = 308/322 (95.65%), Postives = 314/322 (97.52%), Query Frame = 1
Query:   64 MRGFRAMVALNNVLHVGAFLLPISSVLRGNTAPQSTFLPSPAGTPDPAALRRRLTLSAGFNDDGIVASPAILPPSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASREDLSLGDARPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDSIKEAALSVQKNTTGGLTGND 1029
            MRGFRAMVALNNVLHVGAFL PISSVLRGNTAP+ST+LPSPAGTPDPAALRRRLTLSAG ND+GI+ASPA+LP SGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASREDLSLGD RPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLD IKEAAL +Q NTTGGLTG D
Sbjct:    1 MRGFRAMVALNNVLHVGAFLWPISSVLRGNTAPKSTYLPSPAGTPDPAALRRRLTLSAGSNDEGIIASPAVLPSSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASREDLSLGDGRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDCIKEAALPLQMNTTGGLTGKD 322          
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: A0A7S0MNQ6_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MNQ6_9CRYP)

HSP 1 Score: 190 bits (482), Expect = 1.350e-52
Identity = 102/233 (43.78%), Postives = 126/233 (54.08%), Query Frame = 1
Query:  283 PSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPR--PFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSF----RASREDLSLGDARPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKL 963
            P   P++ FPGGGI+FWWQAG + ALQE Y L  LD  GASAG+L A               A  L D N +W RP GL G+WG M+  WL ELLPDDA   C  RV + V  + P   P RR +V DF +K D+I AC+ASVHIP+F+D   +ARHRG R VDGS     R +      GD +  +      D  +A  R  FL   + EG   + +RGYDH     A   L
Sbjct:   61 PERPPLIVFPGGGIYFWWQAGAVKALQEMYTLDDLDMTGASAGALCAVLAGCNVDMDRAFELASRLADENGVWERPQGLMGIWGGMIRQWLHELLPDDAARRCSGRVAISVTALSPAVPPLRRLSVDDFETKGDVIDACLASVHIPFFLDGKATARHRGARCVDGSLTFALRRTPWLFKPGDRQAALVVHQSHDAGLAGDRPGFLETLSLEGFRELYRRGYDHTHAAHAAAAL 293          
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: A0A388K383_CHABU (Patatin n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K383_CHABU)

HSP 1 Score: 188 bits (477), Expect = 7.460e-49
Identity = 107/240 (44.58%), Postives = 139/240 (57.92%), Query Frame = 1
Query:  292 KPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGI-----WPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASREDLSLGDARPTVYFDYDEDEVMAARRGKFLSLTNQ-EG-------LLFMRQRGYDHVQTMLAEGKLDSI 972
            +P+LSF GGGIFF+WQ G   AL   ++L   D  GASAG+LAA               A  L   N +W RP GL G+WG M+  WLDELLP +A  +C  R+H+ V+ +         F RR V  F SK DLI ACMASVHIP+F+D    AR R    VDGSF AS+  +S    RPTV+ DY +DE +A++R +FLSL  Q EG       LL M  +G  HV+ +L++ KL ++
Sbjct:  380 RPLLSFQGGGIFFYWQLGAARALSRHFDLDKADMAGASAGALAATLAACEVDAEEATKLAFQLSLDNRVWDRPTGLGGIWGPMIRSWLDELLPPNAAQLCDGRLHIYVLELPSLRRRSPAFVRRGVCQFHSKRDLIDACMASVHIPFFIDGGACARFRDRWCVDGSFLASKHSISPYPDRPTVWVDYMDDEDLASQRLRFLSLGAQGEGPQRTWQWLLTMISKGEAHVEKLLSDHKLAAL 619          
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: L1IQE7_GUITC (PNPLA domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IQE7_GUITC)

HSP 1 Score: 177 bits (450), Expect = 1.660e-48
Identity = 91/240 (37.92%), Postives = 134/240 (55.83%), Query Frame = 1
Query:  280 PPSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWP-----RPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSF----RASREDLSLGDARPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDSI 972
            P   +P++ FPGGGI+FWWQAGV+  LQ+R N+ S DF GASAGSL+A               A  L +   +WTR  GLAG+WG M+  WLDELLP++A  IC DRV ++ + +        P +R++++ F +K DLI+ACMASVH+P F+D   S    G   VDGS     R         D +P++   + +D+ + AR+  FL   + +    M + G  + + M+ +  L+S 
Sbjct:   12 PSDSRPLIVFPGGGIYFWWQAGVVQGLQKRINVDSFDFTGASAGSLSAVFAACGVDMMQAFHLAQKLAEEKNVWTRKEGLAGIWGDMIYQWLDELLPENAAEICTDRVDMVAVSVTSVRLSFLPLKRKSITRFKTKKDLIEACMASVHVPMFLDGKMSRSLDGDICVDGSITFVLRNKPWHFKPQDRKPSLMIHHQDDKELMARKWNFLETISLDQFEEMFEMGQKYAEEMIDKKTLESF 251          
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: A0A7S0MR98_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MR98_9CRYP)

HSP 1 Score: 176 bits (447), Expect = 1.160e-47
Identity = 92/230 (40.00%), Postives = 127/230 (55.22%), Query Frame = 1
Query:  265 SPAILPPSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPR--PFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSF----RASREDLSLGDARPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHV 936
            SP+       P++ FPGGGI+FWWQAG + ALQERY++      GASAG+L A               A  L   N +W R  GL G+WG+++ +WLD +LP++A  +CR RV + V  +     P +RR+V DF +K DL++AC+ASVHIP+F+D    + HRG   VDGS     R         +  P +  D+  DE + ARR  FL   +Q+    M Q GY HV
Sbjct:   33 SPSSQITDQPPLIVFPGGGIYFWWQAGAVKALQERYDIDKCSLTGASAGALIAVLAGCKIDMDYALQVAERLAVQNGVWGRACGLMGIWGSIIYEWLDIILPENAAELCRGRVSVSVTSVHSSFPPLKRRSVGDFGTKRDLMQACLASVHIPFFLDGRLFSGHRGAACVDGSLTFVLRGKPWHFRPDEPEPALLVDHRTDEALMARRWGFLQTISQDAFRHMYQLGYAHV 262          
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: A0A7S4C0Y1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0Y1_CHRCT)

HSP 1 Score: 174 bits (441), Expect = 6.510e-47
Identity = 108/254 (42.52%), Postives = 146/254 (57.48%), Query Frame = 1
Query:  274 ILPPSGK----PVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPL-GLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRP----FRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFR----ASREDLSLGDARPTVYFDYDEDEVMA---ARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDSIKEAAL 987
            ++PP+      P L+FPGGGIFFWWQAG ++AL ER++L+ +  VGASAG+LAA               A DL D + ++ R   GL GVWG MV +WLDELLP DADV+CR RVH+LV  + PR     F    +SD+ S++DLI   +AS H+P F+D  ++AR RG R VDGS      +S   + L    P V  D   D  M    +RR  FL L +++G+  M + G  HV  M  +G L+ +   AL
Sbjct:   27 MVPPASTLQQLPGLAFPGGGIFFWWQAGAVAALNERFDLARVPCVGASAGALAATIAATKVDPHRALDIAADLADRHGVYDRGAWGLYGVWGPMVREWLDELLPKDADVMCRGRVHILVKRV-PRLRHPYFEPVMLSDYRSRADLIDVNLASAHVPLFLDGRWTARLRGMRCVDGSLSLRPDSSLRRVVLPGRAPVVRIDSSGDLRMRERYSRREDFLRLASRDGVEEMLEWGVKHVAQMERDGALELLAPYAL 279          
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: K0TQT9_THAOC (PNPLA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQT9_THAOC)

HSP 1 Score: 171 bits (434), Expect = 4.940e-46
Identity = 93/231 (40.26%), Postives = 138/231 (59.74%), Query Frame = 1
Query:  295 PVLSFPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDR-VHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASRED-LSLGDA-RPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDSIK 975
            P + FPGGG+FF+WQAGV++ LQE  Y+LS+    GASAG+L+A               AL +   N +W RP+GL G+WG+++EDWLD LLPDDA +   D  +H+LV  +    F +  VS+F  +SDLI+A MASVH+PWF+D + +   RG   +DGSF AS  D LS  D  R  +  D+  D VM  + G+F+ + + + +  +  RG ++ + M   G+   ++
Sbjct:   39 PAIVFPGGGLFFYWQAGVVTHLQEAGYDLSAATMSGASAGALSATLAKTGVSPIDATELALHMSKENGVWERPMGLQGIWGSIIEDWLDRLLPDDAALRVDDGCLHILVTPV--PSFGKSRVSNFEDRSDLIRANMASVHLPWFLDSNLTTHFRGRACIDGSFLASPSDYLSDRDQDRQRLVLDFKRDPVMKDKAGEFIKVVSPQAIWDILDRGKEYARIMERSGEFACLE 267          
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: A0A6U3R5T6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R5T6_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.410e-45
Identity = 95/231 (41.13%), Postives = 133/231 (57.58%), Query Frame = 1
Query:  307 FPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASRED----LSLGDARPT-VYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDSIKEA 981
            FPGGGIFF+WQAG  S L+E  Y+LS +   GASAG+LAA               AL L +   +W RPLGL GVWG M+E WL++LLPD+A  +  +R+ LLV  I    FR   +S F SK DL++  MASVH+PWF+D   ++  R    +DGSFRA  ED    +  G    + +  D+  D VM  +   F+ LT++EG+  + ++G  + Q M   G  D+I ++
Sbjct:   86 FPGGGIFFYWQAGAASYLREAGYDLSDVTMSGASAGALAATLTLADVDFEEATSLALKLAEDAGVWDRPLGLQGVWGPMIETWLNDLLPDNAVEMVDERLSLLVTSI--PSFRTDRISSFESKEDLVRCNMASVHLPWFLDGKLTSNFRQAPRIDGSFRAKTEDYFPQVKNGQVDDSLIILDWKSDPVMEGKTKDFIKLTSKEGIWDLLEQGRSYAQIMDKRGDFDTISQS 314          
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: A0A7S2IAY4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAY4_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.220e-45
Identity = 98/232 (42.24%), Postives = 130/232 (56.03%), Query Frame = 1
Query:  307 FPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASRED---------LSLGDARPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDSI 972
            FPGGGIFF+WQAG  S L+E  Y+LSS+   GASAG+L A               AL L +   +W RPLGL GVWG M+E WL++LLP++A  +  DR+ LLV  I    FR   +S F SK DL+K  MASVH+PWF+D   ++  R    VDGSFRA   D         LS  D    +  D+  D +M  +   F++LT++EG+  + +RG  H + M   G  D I
Sbjct:   94 FPGGGIFFYWQAGAASYLREAGYDLSSVRMSGASAGALVATLTLTDVDFDEATRLALSLAEEAGVWERPLGLQGVWGPMIETWLNDLLPENAVEMVDDRLSLLVTAI--PSFRTDRISSFNSKEDLVKCNMASVHLPWFLDGKLTSNFRDAPHVDGSFRAKPNDYFPELNGQELSEDDDS-LIILDWKADPIMKGKAKDFVTLTSKEGIWGLVERGRSHAKIMDKRGAFDGI 322          
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Match: A0A7S4JAL6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAL6_9STRA)

HSP 1 Score: 167 bits (423), Expect = 8.820e-44
Identity = 101/266 (37.97%), Postives = 146/266 (54.89%), Query Frame = 1
Query:  202 PAALRRRLTLSAGFNDDGIVASPAILPPSGK----PVLSFPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRP-FRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASREDLSLGDARP--TVYFDYDEDEVMAARR-GKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDSI 972
            P+A  RRL ++         AS +     GK    P L FPGGGIFF+WQAG ++ L+E  Y+LSS+   GASAG+L A               AL       +W RPLGL GVWG+++E WLD+LLP DA     D   L ++ + P P F +  V+DF  +SDLI+A MAS+HIPWF+D   + R+R    +DGSF +   D  + + RP   V  D+ +D  M+ ++ G F+   ++EG+  + +RG  +   M   G  +S+
Sbjct:   64 PSAEERRLQMATSS------ASESSSTSEGKRERAPQLIFPGGGIFFYWQAGAVTHLRESGYDLSSVSMSGASAGALTATLAATGVDFLDATDLALQFAQEAGVWDRPLGLQGVWGSLIERWLDDLLPPDAHATANDGPGLQLL-VTPVPSFGKTKVTDFRDRSDLIRANMASIHIPWFLDGKLTTRYRDAEHIDGSFLSKATDY-VTEVRPKNVVRLDWTKDPAMSDKKLGDFVEALSKEGIWDLVERGKSYAALMEERGDFESL 321          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13883.3034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGY0_9PHAE1.290e-20995.65PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S0MNQ6_9CRYP1.350e-5243.78Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]
A0A388K383_CHABU7.460e-4944.58Patatin n=1 Tax=Chara braunii TaxID=69332 RepID=A0... [more]
L1IQE7_GUITC1.660e-4837.92PNPLA domain-containing protein n=1 Tax=Guillardia... [more]
A0A7S0MR98_9CRYP1.160e-4740.00Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S4C0Y1_CHRCT6.510e-4742.52Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
K0TQT9_THAOC4.940e-4640.26PNPLA domain-containing protein n=1 Tax=Thalassios... [more]
A0A6U3R5T6_9STRA2.410e-4541.13Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2IAY4_9STRA3.220e-4542.24Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4JAL6_9STRA8.820e-4437.97Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13883contigEcto-sp13_S_contig13883:259..4275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score578.9
Seed ortholog evalue1.4e-162
Seed eggNOG ortholog2880.D7FNZ7
Model size1589
Hectar predicted targeting categorychloroplast
Exons6
EggNOG free text desc.triglyceride catabolic process
EggNOG OGsKOG3773@1,KOG3773@2759
Ec32 ortholog descriptionPatatin/Phospholipase A2-related
Ec32 orthologEc-10_004960.1
Cds size969
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13883.3034.1prot_Ecto-sp13_S_contig13883.3034.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13883 322..3718 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462740.674578-UTR-Ecto-sp13_S_contig13883:258..3211681462740.674578-UTR-Ecto-sp13_S_contig13883:258..321Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13883 259..321 +
1681462740.760258-UTR-Ecto-sp13_S_contig13883:3718..42751681462740.760258-UTR-Ecto-sp13_S_contig13883:3718..4275Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13883 3719..4275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462740.6998107-CDS-Ecto-sp13_S_contig13883:321..5911681462740.6998107-CDS-Ecto-sp13_S_contig13883:321..591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13883 322..591 +
1681462740.7147763-CDS-Ecto-sp13_S_contig13883:1154..13161681462740.7147763-CDS-Ecto-sp13_S_contig13883:1154..1316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13883 1155..1316 +
1681462740.7234893-CDS-Ecto-sp13_S_contig13883:1687..18041681462740.7234893-CDS-Ecto-sp13_S_contig13883:1687..1804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13883 1688..1804 +
1681462740.731966-CDS-Ecto-sp13_S_contig13883:2356..25021681462740.731966-CDS-Ecto-sp13_S_contig13883:2356..2502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13883 2357..2502 +
1681462740.7408853-CDS-Ecto-sp13_S_contig13883:3212..32771681462740.7408853-CDS-Ecto-sp13_S_contig13883:3212..3277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13883 3213..3277 +
1681462740.7499926-CDS-Ecto-sp13_S_contig13883:3509..37181681462740.7499926-CDS-Ecto-sp13_S_contig13883:3509..3718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13883 3510..3718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13883.3034.1

>prot_Ecto-sp13_S_contig13883.3034.1 ID=prot_Ecto-sp13_S_contig13883.3034.1|Name=mRNA_Ecto-sp13_S_contig13883.3034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
MRGFRAMVALNNVLHVGAFLLPISSVLRGNTAPQSTFLPSPAGTPDPAAL
RRRLTLSAGFNDDGIVASPAILPPSGKPVLSFPGGGIFFWWQAGVISALQ
ERYNLSSLDFVGASAGSLAATLAACDADMDLAMKLALDLCDTNEIWTRPL
GLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRPFRRRAVSDF
TSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASREDLSLGDA
RPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKL
DSIKEAALSVQKNTTGGLTGND*
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mRNA from alignment at Ecto-sp13_S_contig13883:259..4275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13883.3034.1 ID=mRNA_Ecto-sp13_S_contig13883.3034.1|Name=mRNA_Ecto-sp13_S_contig13883.3034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13883:259..4275+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGCGGAGGGCAAAGGCAGCATCAATCTCGCCGCCCGTGGGGCCACCCT GGCGGCTAGCAGCATGCGAGGCTTCAGGGCGATGGTAGCGCTCAACAACG TCCTTCACGTGGGCGCCTTCCTTTTGCCAATCTCCTCTGTTCTCCGCGGC AACACGGCGCCGCAGTCGACCTTTCTCCCCTCTCCCGCCGGGACACCTGA TCCCGCCGCGTTGCGGAGACGGTTGACGTTGTCCGCAGGCTTCAACGACG ACGGCATCGTCGCGTCTCCCGCTATCTTACCACCATCCGGCAAGCCAGTA CTGAGCTTTCCCGGGGGTGGGATTTTCTTTTGGGTGAGCCCCTTTGTCTG GAGTTTCTACTACTACTGTACGTCAGCCTTAATTTTACATCCAGTACGCG GCGTATTTGTACGGCAGCAGCAGCGAGCATCTCTCCAACAAGCAGCAAGC ACGACAGGGTGTGTGAGAGCGATGGCAGTGCGGACAAAGGCTGGCAATAC AGAATGCACACAGGATCGGTATCTCCGCCAAACTTGCACTACCTCCGTAA CCCCCAAACGAACGCTCGACCAGACTGACCGGCGATTATGCAGCAGTATA CAGACACCAAATGTTCAACGTACATTTACCGGAGACCAAGCCGTTACAGC AGCAGATATCATGTCGTATGCAAAGTTATTCTGGGGTGTCGATCAATCGA ACTCTATGGTAACCTCCAAAACACCAATAACTTGGGAGCAGGGCGACCAC GACACAGCTACATACACATGCTCTTCGTGTTGCTGGGCGCTACGCCCCCA CTCGTTTCCGAGACTGTCGTCAACTTGAGGTACCTCGCGTGATCGAAACC CTTTCCTCCGACCGTCCGTGCTCTCCCCCTTTGCTTGCTTGACCAGTGGC AAGCGGGTGTCATTAGCGCGTTGCAGGAGCGTTACAACCTATCTTCCCTG GATTTTGTCGGTGCTTCGGCGGGGTCACTCGCAGCCACGCTTGCCGCTTG TGACGCGGACATGGATCTCGCCATGAAGTTGGCTCTCGACCTCTGCGATA CTAACGAGGTAACGGTGGGTACAGCGCGCAGTGAGCAACGGCGGCACTGC TGACGGTGGGGTAGTTGTCCCACCTTCACGCGTGTACACTACTTCTTGAG GCCTCGCTCCGACACGAGACGATCGGGGTCAACGTGCAGTGTACTCTCTG CGCGAGCGACTAGGCAGACAAGATCAAAGTCAGGTCTATTTATAGTGGCC CTCCCTCCTCTCAGCTAGGCACTTCGGCTACGCTGTGATGTTGAACGTTA TCATGTCATGTCTCTGCCATACCCAACATCCATGGATCACTAGAACCAGC TCGAGCTGGCCACTTATATTCTAGTGGTTCACATGTTAAATGCTAAAGCC CTGGCGATGGACGTCTTGCGTCTCCGCAGATTTGGACGCGACCGCTGGGA CTTGCCGGTGTGTGGGGCGCGATGGTGGAGGACTGGCTCGACGAGCTGCT TCCAGACGACGCGGACGTTATCTGTCGAGACCGCGTGCATTTATTGGTGG GTGCGATTTCACGAAGAAGCGCTGCTGGTCGGCGAACAAACTCGAAGACA ACCGCTACGCGCCTCGCACCTGGTGTATCAGGGAACTGTTATTCTTTCTT CGGCGTCAGGACGTGCTTGTGCCTCCTGTACAGTATCGAAAACAAATTAA AATGTTTTCTCATGCAAGCAAGAATTAACGTTTGGGGTGGGGGAGATATG AGTGCTTCCTGAAGTGATTCATTCCCGCCCTCAGGTAACTCGCCTCCATA GGCAGATGCAGCCTTCGCCACCAGCGCGGGGTTGTGGCCATTGGTTTGGC GACCGATGGAGCTGTGCCTACTGCAACATCTTAGCGTTCTGGGTTGCAGG ACGCCGTACGTTCCGTATTTTGTAGAGGGCCTGAAAATTCTATTCCGCAC TCTGCTCGTCATCGACAGCACATAGGTTTTGGGCAGATTTTTCGCAATCT CTTCCAATTTGGTCGTAGAGCTTACCTCTCTATCGTACAATACGTTCCAA AACAATTTCTCGTGTCCAAATTGTGGGGTTTTGAATCGTCTACATCAGGT GATAGGGATCTGGCCCAGACCGTTCAGGCGACGAGCAGTGTCGGACTTCA CGAGCAAGAGTGATCTGATAAAGGCTTGCATGGCCTCCGTACACATCCCG TGGTTCATGGACAAGCACTTCTCGGCGCGACATAGGGGGGGGCGGTACGT AATCGGCACATACGTACACGGTTCTATTTAGAGTTTGTAGCATTCCACGA AGGAGGCCTGACCAGAACGCCGTGTCGACAGTTTTTTATTAAATAGCTGT CTGTGCCGGTGTGTTGAAATACGCTGCTACGCTGCAGGTCTTCATTTTCG GGCTCTTGGTGATGGCTTATTGCAAGCTTATTCCTTGCTGCTATGGTTGA CGAACTTGTGAGGAATGACCCCCCACTGTCCGCCGCAGCCCGTAAACGCA TCTCGTGTGCAAGGCCGAGGTACTCGTTTTGGAGGCTCAACGTTTTTGTG GCAGGCTTTTCGGCCAAGCTTTAGCGTTTGTGCTACAACAGAGTAGGCGT ACCCTGCGGGATGCCACGCACAAAGACATCGACACCGTGTGAAATGCTAT GCAGAAAAGGTGTGCTTGTCTCCATGTCAGAGCTCGAATCTCGAAACATT CCCAGAAAAAACTGCCAACCGTTCTGCGCTCGACCAAAGAATGGGATCCC CTCCAGGCTTGACGCCCCCTTGATCCCCCACCTTGCCGTTTGGTTGACAA TGCGTTTCGCACCCTTTGGGTTTCCCGGGGTACAATGTAGTAGTACTGGT GTAGCGGTCCATTCTGTGGCGTCAAATGTTGGTGTTTTTTCCGAGCTTCT GGTATTGTCGTTTAATCTTGAGACCCTCCTCGACCGACCGCCTCTCGTCG CCAGATTCGTCGACGGTTCCTTCAGGGCGAGCCGCGAAGACCTATCGCTC GGAGACGCAAGACCAACAGGTGATGACCACCATTTTCATAAAAGAAGGGC ACGAAGGCACACGTATTCTGTACCAAATGTGGTGAGAACGAGCACGTTCT TTTTCACGAAACGCGAAACCGAAAACTGCGGGCTTGAGACACATGCTTCG CGAGAAACCGTGCATTCTTTGGTGTTGGTGCCTCCAACAGCCCGATTGAC GCTCTCGCGACACCCCTTTCCTCTAAACGTCCTTGCTCTACATCGTTGAA GTGTACTTCGACTACGATGAAGACGAGGTGATGGCAGCGAGGCGAGGCAA GTTCCTGAGCCTCACGAACCAGGAAGGCCTGTTGTTTATGAGGCAAAGGG GCTACGATCACGTGCAGACGATGCTGGCGGAGGGAAAGCTCGACTCTATC AAAGAGGCGGCCCTATCTGTGCAGAAGAACACTACCGGAGGATTGACCGG CAATGATTAGAGCGGGTACTGCTATTTGTCGTCAAGGGAGAACGCAGAGG CCGGCGGTTTTGCACGAGTCGGGGACAGAGCGCACCCTTTCTGTGTAAAA AAATCAGAAACTGGACAGTTGTGGCAACTTATGTCGTGTCTCTTCCTTTC CTAACTCCCAGAGACACTCACTTCCTGCCGGCGTATGCCTGCTGCCGCGA GTGGTCCGGGAATCGTACTGAGCTGCGACATGAGACTGACGCGTTGTCGC AGTGTTGCTTTTTTCCGCGGTACATGCTGGGTTCTCACGGCATTTTTCAA GACCGCCGTTGTATAGTTTTGTTTTTTGCTGAATCGGCAGGCGAACGCCA CAGTGCGCGAACGAAAGCGTCACGTGTGCCACATCCTACCAATGGCAGGC ACATGGACGGGGGCAGCTAAATCATCGGCCGCAGTGGGCTCCCAGCAGAC AATCGAGCCCTACCTTAGTAGACACACCTTCCAATTTCTCTTTCACCCTA CTCCGCTACCACTCCATGCAGATTGTTCAAAGCTCGTCACTTAATTATTG GCCGCCTGCGTCCATGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13883:259..4275+

>mRNA_Ecto-sp13_S_contig13883.3034.1 ID=mRNA_Ecto-sp13_S_contig13883.3034.1|Name=mRNA_Ecto-sp13_S_contig13883.3034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13883:259..4275+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGGCTTCAGGGCGATGGTAGCGCTCAACAACGTCCTTCACGTGGG
CGCCTTCCTTTTGCCAATCTCCTCTGTTCTCCGCGGCAACACGGCGCCGC
AGTCGACCTTTCTCCCCTCTCCCGCCGGGACACCTGATCCCGCCGCGTTG
CGGAGACGGTTGACGTTGTCCGCAGGCTTCAACGACGACGGCATCGTCGC
GTCTCCCGCTATCTTACCACCATCCGGCAAGCCAGTACTGAGCTTTCCCG
GGGGTGGGATTTTCTTTTGGTGGCAAGCGGGTGTCATTAGCGCGTTGCAG
GAGCGTTACAACCTATCTTCCCTGGATTTTGTCGGTGCTTCGGCGGGGTC
ACTCGCAGCCACGCTTGCCGCTTGTGACGCGGACATGGATCTCGCCATGA
AGTTGGCTCTCGACCTCTGCGATACTAACGAGATTTGGACGCGACCGCTG
GGACTTGCCGGTGTGTGGGGCGCGATGGTGGAGGACTGGCTCGACGAGCT
GCTTCCAGACGACGCGGACGTTATCTGTCGAGACCGCGTGCATTTATTGG
TGATAGGGATCTGGCCCAGACCGTTCAGGCGACGAGCAGTGTCGGACTTC
ACGAGCAAGAGTGATCTGATAAAGGCTTGCATGGCCTCCGTACACATCCC
GTGGTTCATGGACAAGCACTTCTCGGCGCGACATAGGGGGGGGCGATTCG
TCGACGGTTCCTTCAGGGCGAGCCGCGAAGACCTATCGCTCGGAGACGCA
AGACCAACAGTGTACTTCGACTACGATGAAGACGAGGTGATGGCAGCGAG
GCGAGGCAAGTTCCTGAGCCTCACGAACCAGGAAGGCCTGTTGTTTATGA
GGCAAAGGGGCTACGATCACGTGCAGACGATGCTGGCGGAGGGAAAGCTC
GACTCTATCAAAGAGGCGGCCCTATCTGTGCAGAAGAACACTACCGGAGG
ATTGACCGGCAATGATTAG
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