mRNA_Ecto-sp13_S_contig13879.3031.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13879.3031.1
Unique NamemRNA_Ecto-sp13_S_contig13879.3031.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: D8LTP7_ECTSI (Two component regulator three Y domain protein/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 7.870e-35
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            DVYSFGVVVWECLSREVPWKGVAGVDKLVLAV AGERPP+PENAPHDIA+LA+ACWVHDP ARP
Sbjct:  781 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVTAGERPPIPENAPHDIAALAEACWVHDPAARP 844
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: D8LTP4_ECTSI (Putative Leucine Rich Repeat Protein Kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP4_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 7.890e-35
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            DVYSFGVVVWECLSREVPWKGVAGVDKLVLAV AGERPP+PENAPHDIA+LA+ACWVHDP ARP
Sbjct:  792 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVTAGERPPIPENAPHDIATLAEACWVHDPAARP 855
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: A0A6H5JVI4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI4_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 7.930e-35
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            DVYSFGVVVWECLSR+VPWKGVAGVDKLVLAV AGERPP+PENAPHDIA+LAKACWVHDP ARP
Sbjct: 1004 DVYSFGVVVWECLSRKVPWKGVAGVDKLVLAVTAGERPPIPENAPHDIAALAKACWVHDPAARP 1067
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: A0A6H5K0B7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.380e-33
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            DVYSFGVV WECLSR VPWKGVAGVDKL+LAV AGERPP+PENAPHDIA+LA+ACW H+PGARP
Sbjct:  458 DVYSFGVVAWECLSRGVPWKGVAGVDKLMLAVTAGERPPIPENAPHDIAALARACWAHNPGARP 521
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: A0A6H5JDD7_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDD7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.340e-13
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAV-NAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            D+YSFGVV+WE LSRE+PW G+AG   +   V   GERP +P   P +I  + K CW   P  RP
Sbjct:  950 DMYSFGVVIWEVLSREIPWSGLAGNPAICFKVATLGERPAIPCGTPPEIEDILKLCWAQQPQNRP 1014
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: A0A6J2WBN2_CHACN (mitogen-activated protein kinase kinase kinase 20 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WBN2_CHACN)

HSP 1 Score: 72.8 bits (177), Expect = 1.820e-13
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            D YS+GVV+WE L+RE+P+KG+ G+    L V   ER  VP + P   ASL K+CW+ DP  RP
Sbjct:  188 DTYSYGVVLWEMLTREIPFKGLEGLQVAWLVVEKNERLTVPSSCPASFASLLKSCWLTDPKDRP 251
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: A0A4W5JGR8_9TELE (Sterile alpha motif and leucine zipper containing kinase AZK n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5JGR8_9TELE)

HSP 1 Score: 72.0 bits (175), Expect = 2.920e-13
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            D+YS+GVV+WE L+RE+P+KG+ G+    L V   ER  +P + P   A L + CWV DP  RP
Sbjct:  224 DIYSYGVVLWEMLTREIPFKGLEGLQVAWLVVEKSERLTIPSSCPDSFAELMRKCWVTDPKERP 287
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: A0A4W5JVL1_9TELE (Sterile alpha motif and leucine zipper containing kinase AZK n=15 Tax=Protacanthopterygii TaxID=41705 RepID=A0A4W5JVL1_9TELE)

HSP 1 Score: 72.0 bits (175), Expect = 3.170e-13
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            D+YS+GVV+WE L+RE+P+KG+ G+    L V   ER  +P + P   A L + CWV DP  RP
Sbjct:  188 DIYSYGVVLWEMLTREIPFKGLEGLQVAWLVVEKSERLTIPSSCPDSFAELMRKCWVTDPKERP 251
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: A0A8C7VFF5_ONCMY (Mitogen-activated protein kinase kinase kinase 20 n=8 Tax=Protacanthopterygii TaxID=41705 RepID=A0A8C7VFF5_ONCMY)

HSP 1 Score: 70.9 bits (172), Expect = 6.570e-13
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            D YS+GVV+WE L+RE+P+KG+ G+    L V   ER  +P + P   A L + CWV DP  RP
Sbjct:  188 DTYSYGVVLWEMLTREIPFKGLEGLQVAWLVVEKSERLTIPSSCPDSFAELMRKCWVTDPKERP 251
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BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Match: A0A8C8LSD5_ONCTS (Mitogen-activated protein kinase kinase kinase 20-like n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C8LSD5_ONCTS)

HSP 1 Score: 70.9 bits (172), Expect = 8.100e-13
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIASLAKACWVHDPGARP 192
            D YS+GVV+WE L+RE+P+KG+ G+    L V   ER  +P + P   A L + CWV DP  RP
Sbjct:  188 DTYSYGVVLWEMLTREIPFKGLEGLQVAWLVVEKSERLTIPSSCPDSFAELMRKCWVTDPKERP 251
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13879.3031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTP7_ECTSI7.870e-3592.19Two component regulator three Y domain protein/ le... [more]
D8LTP4_ECTSI7.890e-3592.19Putative Leucine Rich Repeat Protein Kinase (Parti... [more]
A0A6H5JVI4_9PHAE7.930e-3592.19Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K0B7_9PHAE6.380e-3385.94Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JDD7_9PHAE1.340e-1349.23Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6J2WBN2_CHACN1.820e-1350.00mitogen-activated protein kinase kinase kinase 20 ... [more]
A0A4W5JGR8_9TELE2.920e-1346.88Sterile alpha motif and leucine zipper containing ... [more]
A0A4W5JVL1_9TELE3.170e-1346.88Sterile alpha motif and leucine zipper containing ... [more]
A0A8C7VFF5_ONCMY6.570e-1346.88Mitogen-activated protein kinase kinase kinase 20 ... [more]
A0A8C8LSD5_ONCTS8.100e-1346.88Mitogen-activated protein kinase kinase kinase 20-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13879contigEcto-sp13_S_contig13879:2875..3066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score134.8
Seed ortholog evalue1.4e-29
Seed eggNOG ortholog2880.D8LTP4
Preferred nameRIPK4
Model size192
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
Cds size192
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462740.407956-CDS-Ecto-sp13_S_contig13879:2874..30661681462740.407956-CDS-Ecto-sp13_S_contig13879:2874..3066Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13879 2875..3066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13879.3031.1prot_Ecto-sp13_S_contig13879.3031.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13879 2875..3066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13879.3031.1

>prot_Ecto-sp13_S_contig13879.3031.1 ID=prot_Ecto-sp13_S_contig13879.3031.1|Name=mRNA_Ecto-sp13_S_contig13879.3031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
DVYSFGVVVWECLSREVPWKGVAGVDKLVLAVNAGERPPVPENAPHDIAS
LAKACWVHDPGARP
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mRNA from alignment at Ecto-sp13_S_contig13879:2875..3066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13879.3031.1 ID=mRNA_Ecto-sp13_S_contig13879.3031.1|Name=mRNA_Ecto-sp13_S_contig13879.3031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13879:2875..3066+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTGTACAGCTTTGGCGTGGTGGTGTGGGAGTGCCTGTCCCGCGAGGT
CCCGTGGAAGGGAGTCGCCGGGGTAGACAAGCTCGTGCTGGCCGTAAACG
CTGGAGAAAGACCACCCGTCCCCGAAAACGCCCCCCACGACATCGCCTCC
CTGGCAAAAGCATGCTGGGTTCATGATCCGGGCGCTCGGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13879:2875..3066+

>mRNA_Ecto-sp13_S_contig13879.3031.1 ID=mRNA_Ecto-sp13_S_contig13879.3031.1|Name=mRNA_Ecto-sp13_S_contig13879.3031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13879:2875..3066+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTGTACAGCTTTGGCGTGGTGGTGTGGGAGTGCCTGTCCCGCGAGGT
CCCGTGGAAGGGAGTCGCCGGGGTAGACAAGCTCGTGCTGGCCGTAAACG
CTGGAGAAAGACCACCCGTCCCCGAAAACGCCCCCCACGACATCGCCTCC
CTGGCAAAAGCATGCTGGGTTCATGATCCGGGCGCTCGGCCC
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