mRNA_Ecto-sp13_S_contig13874.3029.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: A0A6H5KLK6_9PHAE (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK6_9PHAE) HSP 1 Score: 340 bits (872), Expect = 2.460e-116 Identity = 207/229 (90.39%), Postives = 214/229 (93.45%), Query Frame = 1
Query: 7 MGELDLNQEYSIIGGEMDEEDEEEETFASNEGSXXXXXXXXXXXXXXXXXXXXXXXXXXQVFVDKWCGEFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAERRGEMVGDVIDILMAVGDFAEFKGMMVAHRKGRGNGLVVTSASVGEEEAKTGWHQHAERGGVGDPSAGPTASAEGGNARQTCTVAGVGEAAGRRRETPDAFNTAAESKWRK 693
MGELDLNQE SIIGGEMDEE EEEETFASNEGSXXXXXXXXXXXXXXXXXXXXXXXXXX VDKWCGEF+DVEENKLIYTDLFRQYTRLV ERHLDGWLRQRIRGFEMETFMKMVAER+GE+VGDVIDILMAVGDFAEFKGMMVAHRKGR NGLVVTSAS GEEEAKTGWH+H ERGGVGDPSAG TAS +GG+ARQTCTVAGVGE AGRRR T DAF+T AESKWRK
Sbjct: 1 MGELDLNQECSIIGGEMDEEGEEEETFASNEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDKWCGEFEDVEENKLIYTDLFRQYTRLV-ERHLDGWLRQRIRGFEMETFMKMVAERQGEVVGDVIDILMAVGDFAEFKGMMVAHRKGRDNGLVVTSASAGEEEAKTGWHRHVERGGVGDPSAGSTASGKGGSARQTCTVAGVGETAGRRRGTSDAFSTTAESKWRK 228
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: D7FPD1_ECTSI (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD1_ECTSI) HSP 1 Score: 336 bits (861), Expect = 1.480e-114 Identity = 208/236 (88.14%), Postives = 215/236 (91.10%), Query Frame = 1
Query: 7 MGELDLNQEYSIIGGEMDEEDEEEETFASNEGSXXXXXXXXXXXXXXXXXXXXXXXXXXQVFVDKWCG---------EFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAERRGEMVGDVIDILMAVGDFAEFKGMMVAHRKGRGNGLVVTSASVGEEEAKTGWHQHAERGGVGDPSAGPTASAEGGNARQTCTVAGVGEAAGRRRETPDAFNTAAESKW 687
MGELDLNQEYSIIGGEMDE EEEETFASNEGSXXXXXXXXXXXXXXXXXXXXXXXXX QVFVD+WCG EF+DVEEN+LIYTDLFRQYTRLV ERHLDGWLRQRIRGFEMETFMKMVAER+GE+V DV DILMAVGDFAEFKGMMVAHRKGR NGLVVTS+SVGEEEAKTGWHQHA RGGV DPSAGPTASAEGG+ARQTCTVAGVGE AG RR TPDAFNTAAESKW
Sbjct: 1 MGELDLNQEYSIIGGEMDEIGEEEETFASNEGSXXXXXXXXXXXXXXXXXXXXXXXXXQQVFVDEWCGAYIPQQLLREFEDVEENRLIYTDLFRQYTRLV-ERHLDGWLRQRIRGFEMETFMKMVAERQGEVVDDVSDILMAVGDFAEFKGMMVAHRKGRDNGLVVTSSSVGEEEAKTGWHQHAGRGGVVDPSAGPTASAEGGSARQTCTVAGVGETAGIRRGTPDAFNTAAESKW 235
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: A0A7S0DTY7_9EUKA (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DTY7_9EUKA) HSP 1 Score: 90.9 bits (224), Expect = 2.480e-19 Identity = 44/100 (44.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 190 FVDKWCGEFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAERRGEMVGDVIDILMAVGDFAEFKGMMVAHRKGRGN-GLVVTSA 486
F+DK C +FDD +E KL YT++F+QY ++ E ++ ++ R++G+ E FM M+ +R E+ GDV D+LM++GDF EF+G+M+AH+ RG GL + S+
Sbjct: 54 FLDKNCEQFDDSKECKLTYTEIFKQYVSMI-EGVVEKEVKARVQGYSSERFMAMLKDRPDEISGDVFDMLMSMGDFEEFRGLMLAHKAARGKKGLEIKSS 152
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: A0A6P3VJT3_CLUHA (ADP-ribosylation factor-like protein 2-binding protein n=2 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3VJT3_CLUHA) HSP 1 Score: 91.3 bits (225), Expect = 3.100e-19 Identity = 63/167 (37.72%), Postives = 90/167 (53.89%), Query Frame = 1
Query: 16 LDLNQEYSIIGGE-MDE-EDEEEETFASNEGSXXXXXXXXXXXXXXXXXXXXXXXXXXQVFVDKWCGEFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAERRGEMVGDVIDILMAVGDFAEFKGMMV---AHRKGRG----NGLVVTSAS 489
+D+ ++ + GGE +DE ED +EE FA ++ S Q F+DK+ EFDD EENKLIYT +F +Y L+ ERHL+ L +RI GF M F + + + E+ GD+ D+L+ DF FK M + A ++GRG +GLVV S S
Sbjct: 1 MDIREKNLLGGGENIDEMEDLDEEDFALSKSSAADAEFDAVIGNIEDIIMDDDFQHLQQNFMDKYYQEFDDTEENKLIYTSIFNEYIDLL-ERHLEQQLLERIPGFNMSAFTHSLKQHKDEVSGDIFDMLLTFTDFMAFKEMFIDYRAEKEGRGLDLSDGLVVMSLS 166
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: A0A672YBD2_9TELE (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672YBD2_9TELE) HSP 1 Score: 89.0 bits (219), Expect = 2.350e-18 Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 184 QVFVDKWCGEFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAERRGEMVGDVIDILMAVGDFAEFKGMMVAHR---KGRG----NGLVVTS 483
Q F++K+ EFDD +ENKL+YT +F +Y L+ E+HL+ L +RI GF M TF +V + + E+ GD+ D+L+ DF FK M VA+R +GRG GLVVTS
Sbjct: 63 QNFMEKYYLEFDDSDENKLVYTSIFNEYIDLL-EKHLEQQLTERIPGFNMNTFNDLVIQHKEEVPGDIFDMLLTFTDFMAFKEMFVAYRAEKEGRGLDWSEGLVVTS 168
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: A0A6V2TH31_HETAK (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TH31_HETAK) HSP 1 Score: 88.6 bits (218), Expect = 4.130e-18 Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 190 FVDKWCGEFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAER--RGEMVGDVIDILMAVGDFAEFKGMMVAHRKGRG 462
F + C EF+D +ENKL YTD+F YT ++ E L G L + GF ME F+K + ER RGE+ GDV D+L+++ DF EFK +M++H++G G
Sbjct: 72 FFKQHCDEFEDTDENKLEYTDIFNSYTEMIEE-FLAGRLAAAVPGFSMERFLKQLEERNERGEVTGDVFDMLLSLTDFMEFKHIMLSHKEGGG 163
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: UPI0020153EA0 (ADP-ribosylation factor-like protein 2-binding protein isoform X1 n=4 Tax=Alosa TaxID=34772 RepID=UPI0020153EA0) HSP 1 Score: 86.3 bits (212), Expect = 2.470e-17 Identity = 58/167 (34.73%), Postives = 89/167 (53.29%), Query Frame = 1
Query: 16 LDLNQEYSIIGGE--MDEEDEEEETFASNEGSXXXXXXXXXXXXXXXXXXXXXXXXXXQVFVDKWCGEFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAERRGEMVGDVIDILMAVGDFAEFKGMMV---AHRKGRG----NGLVVTSAS 489
+D+ ++ + GGE ++ +D +EE FA ++ S Q F++K+ EFDD EENKLIYT +F +Y L+ E+HL+ L +RI F M F + + + + E+ GD+ D+L+ DF FK M + A R+GRG +GLVV S S
Sbjct: 1 MDIREKNLLGGGENIVEMDDFDEEDFALSKSSAADAEFDTVIGNIEDIIMEEDFQRLQQNFMEKYYQEFDDTEENKLIYTPIFNEYIDLL-EKHLEQQLVERIPAFSMSAFTQSLKQHKDEVSGDIFDMLLTFTDFIAFKEMFIDYRAEREGRGLDLSHGLVVKSLS 166
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: A0A6G0WGX0_9STRA (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGX0_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.890e-17 Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 190 FVDKWCGEFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAERRGEMVGDVIDILMAVGDFAEFKGMMVAHRK 453
F K C FDD ENKLIY DLF++YT L+ E +L+ L+ +I GF ME +M+ E ++ GDVIDILM+ DF EFK +M++ ++
Sbjct: 58 FCQKHCEYFDDASENKLIYMDLFKEYTLLI-ENYLEARLQAQIDGFTMEELCQMIQEHEDDITGDVIDILMSCADFDEFKSLMLSFKQ 144
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: A0A7D9IL55_PARCT (ADP-ribosylation factor-like protein 2-binding protein n=3 Tax=Alcyonacea TaxID=40677 RepID=A0A7D9IL55_PARCT) HSP 1 Score: 85.5 bits (210), Expect = 5.060e-17 Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 190 FVDKWCGEFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAERRGEMVGDVIDILMAVGDFAEFKGMMV---AHRKGRG---NGLVVTSAS 489
F++K F+DVEENKL+YTD+F QYT L+ E+HL+ L+QR+ F ME FM + R+ ++ GD+ D+L++ DF FK M + A ++G+ GL++T S
Sbjct: 50 FMEKHYHHFEDVEENKLVYTDIFTQYTNLI-EKHLEECLKQRMPDFSMEEFMTSLQSRKDQIGGDIFDMLLSFSDFIMFKQMFLDYKADKEGKNVDLGGLIITPLS 154
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Match: A0A6U4NUG4_HEMAN (ADP-ribosylation factor-like protein 2-binding protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6U4NUG4_HEMAN) HSP 1 Score: 85.9 bits (211), Expect = 7.580e-17 Identity = 43/106 (40.57%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 184 QVFVDKWCGEFDDVEENKLIYTDLFRQYTRLVAERHLDGWLRQRIRGFEMETFMKMVAERRGEMVG-DVIDILMAVGDFAEFKGMMVAHRKGRGNGLVVTSASVGE 498
+ F D+ C FDD +ENKL+YTD+F++YT+LV E +++ L++ I F M+ FM+M++ R EM DV D+L++ DF FK +M++H+ R G V + +V +
Sbjct: 82 ETFADEHCAAFDDSDENKLVYTDIFKKYTQLV-EGYVERRLKEAISDFSMQAFMEMLSAREEEMQSTDVFDMLVSFADFDTFKDIMLSHKHQRHGGSVQLAVNVSQ 186 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13874.3029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13874.3029.1 >prot_Ecto-sp13_S_contig13874.3029.1 ID=prot_Ecto-sp13_S_contig13874.3029.1|Name=mRNA_Ecto-sp13_S_contig13874.3029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp MGELDLNQEYSIIGGEMDEEDEEEETFASNEGSEEDRGFDSIVGALEEAVback to top mRNA from alignment at Ecto-sp13_S_contig13874:1588..4019- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13874.3029.1 ID=mRNA_Ecto-sp13_S_contig13874.3029.1|Name=mRNA_Ecto-sp13_S_contig13874.3029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13874:1588..4019- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13874:1588..4019- >mRNA_Ecto-sp13_S_contig13874.3029.1 ID=mRNA_Ecto-sp13_S_contig13874.3029.1|Name=mRNA_Ecto-sp13_S_contig13874.3029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13874:1588..4019- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |