mRNA_Ecto-sp13_S_contig13871.3027.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig13871.3027.1
Unique Name	mRNA_Ecto-sp13_S_contig13871.3027.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: D8LT67_ECTSI (Poly(A) ribonuclease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT67_ECTSI)

HSP 1 Score: 619 bits (1597), Expect = 1.530e-218
Identity = 305/309 (98.71%), Postives = 306/309 (99.03%), Query Frame = 1

Query:    1 QVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFLHRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRHPVAAASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            +VIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFLHRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRHPV  ASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQ HLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI
Sbjct:  217 KVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFLHRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRHPVTVASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 525

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: A0A6H5KPZ2_9PHAE (Pan3_PK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ2_9PHAE)

HSP 1 Score: 600 bits (1548), Expect = 6.040e-211
Identity = 303/326 (92.94%), Postives = 306/326 (93.87%), Query Frame = 1

Query:    1 QVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPRE---------------AFLHRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQ--VSELQRQDMVDLGSLILALACRHPVAAASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            +VIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPRE               AFLHRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRL+CQLL ALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQ  VSELQRQDMVDLGSLILALACRHPV AASRGESLAF AQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGT+NERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI
Sbjct:  219 KVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREVGKTETRTACGGLPVAFLHRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRLMCQLLSALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQARVSELQRQDMVDLGSLILALACRHPVTAASRGESLAFMAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTVNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 544

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: A0A7S2K6Q0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6Q0_9STRA)

HSP 1 Score: 261 bits (667), Expect = 9.770e-82
Identity = 141/316 (44.62%), Postives = 201/316 (63.61%), Query Frame = 1

Query:    1 QVIQHHNGQAFALRRFDTARTTA-KIVAMGTEIWLSMPEHPAITRPREAFLHRNALFFVSDFHPGAETLSERFIQRQGG--LLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRHPVAAASRGESLA----FTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            +VI   +G  + LRR D  +  + KI A   E W S   H  I +  + F+ + ALFFV ++ PG +TL E+++   G   LL E LLW    QL+ A+R  HA   A R + P+ +L    G R+R++ VG  D LE+E RK ++E+QR+DMV LG +IL+LA R  +  ++  E+L     F AQHY+ +LH L ++L+SK PPSV+EVC   A+HTMD ++N      A  + LA+EY++GR LRLLLKLG +NERP+ G   +W+ETG+ Y+LKLFRD++FHQ D  G P++D GHV  +L+ LDA + EKI
Sbjct:   22 KVISREDGLLYCLRRLDNVKCVSNKICAAVNETW-SKIRHAGICQFHKCFISQRALFFVHEYQPGGKTLKEKYLDHGGKPQLLQERLLWSYTTQLVAAIRTVHANRLACRCLQPNHILRTS-GGRLRISCVGIADALEFEARKSLAEIQREDMVCLGRIILSLATRTMITPSTNEETLRACGIFLAQHYSSDLHALTSALLSK-PPSVYEVCGIMANHTMDELDNAYATCDAYSNQLAAEYESGRALRLLLKLGFVNERPEFGVNRQWAETGDCYVLKLFRDFVFHQADETGRPILDLGHVVTALNKLDASDTEKI 334

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: A0A4D9DAW6_9STRA (Protein kinase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAW6_9STRA)

HSP 1 Score: 259 bits (663), Expect = 2.690e-77
Identity = 145/320 (45.31%), Postives = 203/320 (63.44%), Query Frame = 1

Query:    1 QVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFL-HRNALFFVSDFHPGAETLSERFIQR-------QGGLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRHPVAAASRGESLAFTAQHYTPELHNLAASLVSKKPP-SVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLNERPD--QGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            +V+ H +G+A+ALRRFD+ R+T KIVA   E W  + +HP I +  +AF+ H NALFF+ ++HPGA+++++R++         +   L E LLW  V QL+ A+RA HAA AA R +HP+ VL    G R+R+   G +DVLE ETRK ++ELQ +D+  LG LIL LA R      S G +LA   Q Y+PELH L+  L SK    SVFE+    + + +D ++    A   L+ HL+ EY++GRL RL LKL  +  R +  +G    W+ETG RYILKLF+DY++HQ D  G PV+D GHV  SL+ LD+G+ EKI
Sbjct:  340 KVLSHEDGRAYALRRFDSVRSTPKIVAGALETWRRI-QHPNIIKLSKAFIQHGNALFFLHEYHPGAQSVTQRYVDSSRAHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVT-TGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPTPQSLGAALAQVRQQYSPELHALSLQLCSKPGSLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFKDYVYHQEDEGGRPVLDLGHVVHSLNRLDSGDPEKI 657

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: A0A835ZFN0_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFN0_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.010e-76
Identity = 146/320 (45.62%), Postives = 197/320 (61.56%), Query Frame = 1

Query:    1 QVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFLHRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRLVCQLLGALRATHAAGA--ALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSEL----QRQDMVDLGSLILALACRHPVA--AASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLNERPD-QGGV--GEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            +VI + +G  +ALRRF+  RTTA I+    E+W  +  HP + + +EAF+++   FFV D+HP AETL++R+++R G LL EGLLW + CQLL A+RA H A A  A R++ P  VL  L G RVR+NW G  + LEYE    +       +  D+  L   ++++ACR  VA  A +   SL+F   +Y+PEL      L  +  P + +  V  A H  D ++ +      L SHL  EYDNGRLLRLLLKLG +NERPD Q GV  G WSETG+RY+LKLFRDY FHQVD  G   +D GH+ Q L+ LD G+ E+I
Sbjct:  387 KVISNTDGLPYALRRFEGVRTTANIMQETLEMWHGVSAHPGLVQLKEAFMYQGCAFFVEDYHPRAETLAQRYLERPGNLLPEGLLWSIGCQLLSAVRAVHMADARMACRHISPEHVLL-LPGGRVRINWAGVHNALEYEALSTLPAAAAAGRDADIKALACTVISIACRARVAPGAPNLPGSLSFIKANYSPELWRFLYELSLRGVP-LDQALVMAAPHMADCLDASHHECDVLHSHLHGEYDNGRLLRLLLKLGAVNERPDTQRGVSGGGWSETGDRYVLKLFRDYCFHQVDETGAAHLDLGHMLQCLNKLDVGDPERI 704

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: A0A7S2RBK0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBK0_9STRA)

HSP 1 Score: 250 bits (639), Expect = 2.390e-76
Identity = 132/310 (42.58%), Postives = 195/310 (62.90%), Query Frame = 1

Query:    1 QVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFLHRNALFFVSDFHPGAETLSERFI-QRQGGLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRHPVAAASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            +V+   +   +ALRRFD  RTT KI  +  + W S+  HP I    + F+++ ALFFV  + P A+TL ER++  RQ   + E +LW  + Q+  A+R  H AG A R + P+ +L    G R+R+  +G +DVLEY+  K V E QR+D+V LG  +L +A R  V   +  +++   AQ Y+P +  L  SL++K PPSV E+C   A  + D + +       ++ HLA+E+ NGR+L+LL+ LG++NERP+      WSETG+RY+LKLFR+YLFHQVD +G+P +DFGH+  SL+ LDAG+ EKI
Sbjct:   39 KVVGTQDSVTYALRRFDNVRTTPKIAQVAQDRWGSL-RHPNIVALHKCFVYQKALFFVHAYWPTAQTLIERYVGSRQP--VPEHVLWSYLIQITAAIRTVHGAGQACRCIGPAHILVTS-GSRIRIGGIGVIDVLEYDQVKSVVEHQREDIVSLGMTLLTVASRAIVTPQTINQAMIAIAQQYSPVMQTLLISLITK-PPSVAELCGVLASQSFDELGSVYAVADGIEHHLANEFQNGRILKLLVMLGSINERPEYRMDPRWSETGDRYMLKLFRNYLFHQVDEEGQPKVDFGHIIHSLNKLDAGDPEKI 343

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: A0A7S2RA35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA35_9STRA)

HSP 1 Score: 250 bits (639), Expect = 2.720e-74
Identity = 132/310 (42.58%), Postives = 195/310 (62.90%), Query Frame = 1

Query:    1 QVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFLHRNALFFVSDFHPGAETLSERFI-QRQGGLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRHPVAAASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            +V+   +   +ALRRFD  RTT KI  +  + W S+  HP I    + F+++ ALFFV  + P A+TL ER++  RQ   + E +LW  + Q+  A+R  H AG A R + P+ +L    G R+R+  +G +DVLEY+  K V E QR+D+V LG  +L +A R  V   +  +++   AQ Y+P +  L  SL++K PPSV E+C   A  + D + +       ++ HLA+E+ NGR+L+LL+ LG++NERP+      WSETG+RY+LKLFR+YLFHQVD +G+P +DFGH+  SL+ LDAG+ EKI
Sbjct:  250 KVVGTQDSVTYALRRFDNVRTTPKIAQVAQDRWGSL-RHPNIVALHKCFVYQKALFFVHAYWPTAQTLIERYVGSRQP--VPEHVLWSYLIQITAAIRTVHGAGQACRCIGPAHILVTS-GSRIRIGGIGVIDVLEYDQVKSVVEHQREDIVSLGMTLLTVASRAIVTPQTINQAMIAIAQQYSPVMQTLLISLITK-PPSVAELCGVLASQSFDELGSVYAVADGIEHHLANEFQNGRILKLLVMLGSINERPEYRMDPRWSETGDRYMLKLFRNYLFHQVDEEGQPKVDFGHIIHSLNKLDAGDPEKI 554

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: A0A1W0A3K7_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3K7_9STRA)

HSP 1 Score: 242 bits (618), Expect = 1.160e-72
Identity = 129/312 (41.35%), Postives = 190/312 (60.90%), Query Frame = 1

Query:    1 QVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFLHRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRK--QVSELQRQDMVDLGSLILALACRHPVAAASR-GESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            +VI   +G+ +ALRR +  RTT  I     E W  +  HP +     AF+   ALFF+S+++  A++L  +F+Q      SE  LW ++ QL GALRA H    A + V+  R+L     +RVR++  G LDVLEY+T K  +V  LQ++D+ ++G ++L++ CRH +  A+   + L   AQ Y+  L  +  SLV  +  +V  + +A   HTM+ ++N L     L+S LA EY NGR+L L+LKLG +NERP+      WSETG+RY+LKLFRDY+FHQVD +  PV+DFGH+  +L+ LD  + EKI
Sbjct:  169 KVISETDGRTYALRRVENVRTTPGITQQAVEKWKKV-NHPNVVPLHRAFISHGALFFLSEYYANAQSLYSKFVQGSDSA-SETFLWSVLTQLCGALRAIHGQNIACQVVNTRRLLLTS-HNRVRISGTGVLDVLEYDTSKSKRVESLQQEDIANVGKVVLSIGCRHDITPATNISDLLGQFAQSYSANLFEIVKSLVQNECTTVQSLGIAVHDHTMNELDNQLSLTDELESQLACEYQNGRMLLLMLKLGLINERPEFNMDSSWSETGDRYLLKLFRDYVFHQVDEENRPVLDFGHIIDALNKLDGSSAEKI 477

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: B7GDD9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GDD9_PHATC)

HSP 1 Score: 231 bits (588), Expect = 2.030e-68
Identity = 132/322 (40.99%), Postives = 187/322 (58.07%), Query Frame = 1

Query:    4 VIQHHNGQAFALRRFDTARTTA-KIVAMGTEIWLSMP---EHPAITRPREAFLHRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGD----RVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALAC----RHPVAAASRGESLAFTAQHYTPELHNLAASLV--SKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            V    +G A+ LRRFD  R  + KI +  ++ W S+    EHP I    + F+ + A+FFV  + PGA +L ER     GG LSE +LW  + QL+ ALR  H    A R +    +L          RVR+N +G  DVLE+E RK+V++LQR D+ DLG LIL+LA      H     + G    F AQ+Y+P+LHNLA +L+  + +PPS+ +V    A    D  +    +   ++  L++EYD+ R+LR+LLKL  +NERP+ G    W+++G+ Y L LFRDY+FHQ D  G PVMD GHV  +L+ LD  +EEKI
Sbjct:  161 VTSREDGNAYCLRRFDNVRCVSPKIASTVSDRWTSVAVVQEHPGIAPFYQCFMAQRAVFFVHQYIPGARSLKERL----GGPLSECVLWSCISQLVSALRTIHGRNLAARTLQLHHILSNTDSAASRLRVRLNCLGIADVLEFEARKKVADLQRHDVRDLGRLILSLASGTEITHSTDMETVGSCEQFLAQNYSPDLHNLAMTLIRSTPQPPSILDVSRVVAQRAFDEQDAAYQSFDRMERALSAEYDSSRMLRILLKLSYVNERPEFGPNRRWAQSGDCYALTLFRDYVFHQADGGGYPVMDLGHVISALNKLDGADEEKI 478

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BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Match: F4Q1M4_CAVFA (PAN2-PAN3 deadenylation complex subunit PAN3 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q1M4_CAVFA)

HSP 1 Score: 233 bits (593), Expect = 7.930e-68
Identity = 125/326 (38.34%), Postives = 201/326 (61.66%), Query Frame = 1

Query:    1 QVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFLHR-----NALFFVSDFHPGAETLSERFIQRQG--GLLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVG-DRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRHPVAAASRG--ESLAFTAQHYTPELHNLAASLVSKK-----PPSVFEVCVATAHHTMDAMENTLMAN--GALQSHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKI 927
            + I  ++G  +A+RR +  R +++      + W ++ +HP+I   +E F+ +     +++FF  +FHPG+ETL  +++ + G  G+L+E +LW  +CQL  AL+  H+ G   R +HPS++L  L G +R+R+N VG  DV+ ++T + +++ Q +D+V  G L+L+LACR  VA+ +    +S+ F +  Y+ E  NL   L+SK      PP++ ++    A   +   ENT + +    L++ L  E +NGRL RL++KLG +NERP       WSETG+RY+LKLFRDY+FHQV  DG PV+DF HV  +L+ LD+G  EKI
Sbjct:  312 KAISTNDGYPYAIRRVEGFRLSSEFALQAADTWRNI-QHPSIVSLKEIFVSKEFGDNSSIFFTYEFHPGSETLESKYLTQNGSGGILNEAVLWSFICQLTSALKLIHSNGLVCRVIHPSKIL--LTGKNRIRINGVGIFDVVNFDTPRNLAQFQHEDLVIFGRLLLSLACRSAVASTNNNLSKSIEFISSQYSKEFKNLVIFLLSKPQPNMPPPTIDDIVSMIAPRLLQ--ENTYLHSYTDELETELTKEIENGRLFRLMVKLGYINERPSFDLDPRWSETGDRYLLKLFRDYVFHQVYDDGTPVLDFYHVIDALNKLDSGVNEKI 632

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig13871.3027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LT67_ECTSI	1.530e-218	98.71	Poly(A) ribonuclease subunit n=1 Tax=Ectocarpus si...	[more]
A0A6H5KPZ2_9PHAE	6.040e-211	92.94	Pan3_PK domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A7S2K6Q0_9STRA	9.770e-82	44.62	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A4D9DAW6_9STRA	2.690e-77	45.31	Protein kinase domain-containing protein n=3 Tax=M...	[more]
A0A835ZFN0_9STRA	1.010e-76	45.63	Protein kinase domain-containing protein n=1 Tax=T...	[more]
A0A7S2RBK0_9STRA	2.390e-76	42.58	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2RA35_9STRA	2.720e-74	42.58	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A1W0A3K7_9STRA	1.160e-72	41.35	Protein kinase domain-containing protein (Fragment...	[more]
B7GDD9_PHATC	2.030e-68	40.99	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
F4Q1M4_CAVFA	7.930e-68	38.34	PAN2-PAN3 deadenylation complex subunit PAN3 n=1 T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig13871	contig	Ecto-sp13_S_contig13871:443..4584 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	621.3
Seed ortholog evalue	2.4e-175
Seed eggNOG ortholog	2880.D8LT67
Preferred name	PAN3
Model size	927
KEGG ko	ko:K12572
KEGG Pathway	ko03018,map03018
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000288,GO:0000289,GO:0000290,GO:0000932,GO:0000956,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006605,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010603,GO:0010605,GO:0010606,GO:0010629,GO:0010638,GO:0015031,GO:0015833,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0031251,GO:0031334,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042886,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:1902115,GO:1902117,GO:1990904
Exons	6
EggNOG free text desc.	nuclear-transcribed mRNA poly(A) tail shortening
EggNOG OGs	KOG3741@1,KOG3741@2759
Cds size	927
COG Functional cat.	A
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03019

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig13871.3027.1	prot_Ecto-sp13_S_contig13871.3027.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig13871 443..4584 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462740.0986674-CDS-Ecto-sp13_S_contig13871:442..583	1681462740.0986674-CDS-Ecto-sp13_S_contig13871:442..583	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13871 443..583 +
1681462740.1107244-CDS-Ecto-sp13_S_contig13871:1318..1600	1681462740.1107244-CDS-Ecto-sp13_S_contig13871:1318..1600	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13871 1319..1600 +
1681462740.1199431-CDS-Ecto-sp13_S_contig13871:2166..2352	1681462740.1199431-CDS-Ecto-sp13_S_contig13871:2166..2352	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13871 2167..2352 +
1681462740.1289656-CDS-Ecto-sp13_S_contig13871:3141..3227	1681462740.1289656-CDS-Ecto-sp13_S_contig13871:3141..3227	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13871 3142..3227 +
1681462740.1384366-CDS-Ecto-sp13_S_contig13871:3720..3865	1681462740.1384366-CDS-Ecto-sp13_S_contig13871:3720..3865	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13871 3721..3865 +
1681462740.1479313-CDS-Ecto-sp13_S_contig13871:4497..4584	1681462740.1479313-CDS-Ecto-sp13_S_contig13871:4497..4584	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13871 4498..4584 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig13871:443..4584+
coding sequence from alignment at Ecto-sp13_S_contig13871:443..4584+

protein sequence of mRNA_Ecto-sp13_S_contig13871.3027.1

>prot_Ecto-sp13_S_contig13871.3027.1 ID=prot_Ecto-sp13_S_contig13871.3027.1|Name=mRNA_Ecto-sp13_S_contig13871.3027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
QVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFL
HRNALFFVSDFHPGAETLSERFIQRQGGLLSEGLLWRLVCQLLGALRATH
AAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDM
VDLGSLILALACRHPVAAASRGESLAFTAQHYTPELHNLAASLVSKKPPS
VFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTLN
ERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSL
LDAGNEEKI

mRNA from alignment at Ecto-sp13_S_contig13871:443..4584+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig13871.3027.1 ID=mRNA_Ecto-sp13_S_contig13871.3027.1|Name=mRNA_Ecto-sp13_S_contig13871.3027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4142bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13871:443..4584+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCATCCAGCACCACAACGGGCAGGCCTTTGCCCTGCGCCGCTTCGA
CACCGCGCGCACGACGGCGAAGATCGTGGCCATGGGGACGGAGATTTGGC
TGTCCATGCCGGAGCATCCGGCCATCACCCGCCCCCGAGAGGTGGGGAAG
ACAGAGACAAGAACCGCTTGTGGCGGGCTTCCGGGGGTGCTGTTCATTTG
TTGTGATGTGATGGTGATGATCATGATGCGTGAAGCATTTTGATCGGCGC
GGACGGGGGCCACTTTCCGCCCCGAGGGGCCTGTCATGCCTTCCTTCGTT
ACTTCCTTTCCTGAAAAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCGCGCCCCCCACCCCCGCCCACGTACGCCTCCNN
NNNNNNNNTCTCTGGGGCCGGGGGGCGCTCCTTCTGCCCGCGCCGGCGCC
CCTCCCTCCTCGTTTCTTTTCGCTCCTCCAGCACGGCCCCCCCCCCCCCC
CCCCCCGCGCTAACGTGGTGGTACACGGTACCGACGTACACTCTAGTCTT
AACCTACTCTGCTGTGCCCATGTCAGGGGAACCTGCGGGCTACCTAGAAA
GCGTGTCTACAATATAAATATCGTGTTCCCATTGCTCAGCCGGCGTAGCG
CGTTCGACGCGTGTTAGATAAACGCATGCATACCTACCTCCAAGGGCAGA
CCGATCCCCCCCCCCCTCCGCGCCACACCCGTGCTATCGCCTCGTTTCTC
TCCCTTCCTTCCATCTGCAACACTCACCCCGCCCTGACGACCACCCGCAA
AGAACCATCTTCCTTGTTTCTCTCACCCCCCACCCCCCTCCCCCCACCGG
CGGCAACAAAAATACAAAAACCACAGGCGTTCCTCCATCGCAACGCTCTC
TTCTTCGTGTCCGACTTCCACCCGGGAGCGGAGACTCTGTCCGAGCGGTT
CATCCAGAGGCAGGGCGGGCTGCTCTCGGAGGGCCTCCTGTGGCGCCTCG
TGTGCCAGCTGCTGGGCGCGCTGCGGGCGACCCACGCGGCCGGGGCGGCG
CTCCGCAACGTCCACCCGAGCCGCGTGCTGTACTGCCTTGTCGGAGACCG
GGTGCGGGTGAACTGGGTCGGCTGCCTGGACGTCCTGGAGTACGAGACGC
GCAAGCAGGTAAGTGAAGAGTTGTGGCTGTTATTGCAGTTGTTGTTGGGG
GTTTGCGGGATTTGTCAGAGTGGGGTGGGATGGTACGCGGTCTCGTAAGG
AACGACCACGTTTGCTTGCGTTGAGAAAGGGTCAGTTTTGAGTCGAACAC
GGTCTACAGCCACGTTTTCTCGCGATGAGAAAGGGTCGAGGTTTGACGAC
ACGGTCTCTTTGTGAACAACCACGTTAACGTGCGAGAAGAAATGGTCCGA
GTGTGACTCTCTTCCGCTGTCTGCCGTGCACACTTTGAGGTTGTGACAAA
AGCTGTGGCATTTGCGGCCGGGGTGTCGAGGTCTGGTTCTGCGTAGCGCA
TTCTAGCTTGTCGTGTTCATTCAGGCAGGCAGGTAAGGAGACTCCAAGGG
CAATGTAGGAAGACGGTTGTGTGCATACTGTATGGTAAAAATTATATACA
GCAGCACCCATACGGAACGGACAATCAACATCGGTCTTTTGCCTTCGGTT
AAGTGCGTGATGCGATACTTTCGTCGTCTGGTGTGGTTTGCTTTTGATGC
AACCCCGCGCGCGCGCTTGTGCAGGTCTCCGAGCTGCAGCGGCAAGACAT
GGTGGACCTTGGAAGCCTCATCCTGGCGCTGGCGTGCCGACATCCCGTCG
CCGCCGCCTCCCGGGGGGAATCGCTAGCGTTCACGGCTCAACACTACACG
CCCGAGCTGCACAACCTGGCGGCGTCGCTCGTGTCGAAGAAGCCTCCCAG
CGTTTTCGAGGTGAGGGCGGTGGTGGTTTTCATACCAATGTACTGTCGTA
AGCACCGACTCGGTAACCTGAATATACAGCAAAGAGGGCAGACACTCAGT
AGGGACGCATGCATGCATGCATTTGCTGGATAGGAAAACAAAGGTATCAA
AACGTGAAAAAAAAAAGCGTGCAGAACCAAAACCATCTTTCTGTAGAAAT
GTTTTTGGTTGAGCTTTGTTTTTCATGTATGATACGTAGCGATCTGTTGT
GCGGATTTGGAAAACGCCGAGAGACCAAAGTGCGAGTTGCGGTCCTTCGT
GCACATTCCTTGCTGGTCTTGTGGGGCACGCGCAGAGCACACAAGACTAC
ACCGGAATCACTGGAGTGCTTCGTATGGCAGTAGTGGGGTGGGGTAGTGC
TCGTCGACGAGCCAAACAGAGCAGCAGCGGTTGTTGTGTTGACAGGAAAG
GCTTGTCTACGGTTGAGTAGCGTGGCGGTTTAGGGACGAAGGGGGCGGGA
AAAGAGTGAAGGAGGGGCGGACGGGGGAAGGGACAGGACGAAATGCCCGC
TGTCCGTGGAGAGAGCGAGGACAGGACGCGAACGTATTCGGTTGCCATCG
CCTCAGACACGGAAGCTGGGCTTTGGCAGCGTTTGTTGGATGCAATTGAC
CGGACGGGTGTTTTTTTTTTGCTCTTTTGCTCTATTTTGTTGGATATTCG
TTGTGTGGCGATGTGCGAATCACACTGCTGCTGTTGTTGAGGACTGCATC
CCTCACAACGCTTGTGTTGTTGTTGTTGTTGTTGTTGTTTTACGGCCAGG
TCTGCGTGGCAACCGCCCATCACACCATGGACGCCATGGAGAACACGCTG
ATGGCAAACGGCGCGCTTCAGAGCCACTTGGCAAGGTAGGGGCGGGACGG
CACAACGAGAGAAAGATAGAACAGAGTGACACCACGCGCGCTCGAAAAAG
GAGGGCGGTAGTTAGTGGCGGTGGCGTTGGTTGGCATGCAAGCTTTGTGC
GTGTCCGGTAGTCACGGGTCTGGCTGAGGACTTTTGACGAACGGTGTGTT
ATGCAAAACTGGCATCTGTTTTTTGTGCAATGGGTGTTGTTTTTCAGTCC
TAGTGTGTGCGAATTGCGACAGCTTGTGCGCCGCAAAAGCCAACCGCCGC
TGTTTCCCTGCGCGTGTGTCTCGCCGTCCCCTCCCCTTTCCCTGAAACGG
CCCTCCCTGTGATGTTCGTCGGTTGTGCTGGACTCCAACCTTGCCTCGCT
TGTCTTGCCACTTCCCATTACTGCCGTTATGTGACGACGTCCTGCTTCCC
TGAACGATTTTTCCGGCGCGCCCTTGGGGGGGGCTCTGACCAATCGAATG
GCTTCACATGGAAAAAAACACAAAACAGCGAGTATGATAATGGGCGGCTG
CTGCGGCTGCTCCTGAAGCTGGGCACTCTGAACGAACGGCCCGACCAGGG
AGGGGTCGGGGAGTGGTCGGAGACCGGGGAGCGTTACATCCTCAAGCTCT
TCAGGGACTACCTCTTCCACCAGGTGCGGGCGTTTTAGCGCGTTCTCGCC
TGCCCGTGCTTGCGGCTTTGTTCCCGGTGCTCTCGTTGCCCTTTGTGTGT
GTGTGTTTGGTTGATGTTTCTTGGTCTTCTTCCTTGCGATGATTTTCTTG
TTGTTGTTGCATCAGTTTGGTGTGGTGAGTCGCGCGTGGGTGCACCTTTG
CCCAGCCCTCCCAGTATGTCCACCATATTCTTGGGCTTTTTTTTAGGTTT
CCACGAAGGAGGAAGCTGGCTCTTGGTTCGGCGAGACTCGTAGGGTAGTA
TATGGTATTGGGACCGGCTGGGCTGCGGTTTTGCGGTTTCAGTCTCTCCC
TGTAAGACGCTACCTGCCCAAGTTAAGGGTGTCAACGACAGCGACGCCGA
TGCCGACACCGATGAATCCAGCAATAGGACCTACGTATTTTCATTGGTCT
GCCGGCTATAATAGCTCGGTCGATACTAATTCAAGGCCACACACACATAC
AAATTGGGCCGGTTAGCGCGGTCGATGCAAATAATCATTACACACAGACA
CACACATGGCGTCTCTTCATTGGTCAGCCGGGGTAGTAGCACGGTCGATG
TTAACTCCAAGAAACACGCACACACACACACACACGCACACACGCATGCA
CACAGGTGGATGCGGACGGCGAGCCGGTGATGGACTTCGGGCACGTGTAC
CAGAGCCTGTCGCTCCTCGACGCCGGTAACGAGGAGAAGATC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13871:443..4584+

>mRNA_Ecto-sp13_S_contig13871.3027.1 ID=mRNA_Ecto-sp13_S_contig13871.3027.1|Name=mRNA_Ecto-sp13_S_contig13871.3027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13871:443..4584+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCATCCAGCACCACAACGGGCAGGCCTTTGCCCTGCGCCGCTTCGA
CACCGCGCGCACGACGGCGAAGATCGTGGCCATGGGGACGGAGATTTGGC
TGTCCATGCCGGAGCATCCGGCCATCACCCGCCCCCGAGAGGCGTTCCTC
CATCGCAACGCTCTCTTCTTCGTGTCCGACTTCCACCCGGGAGCGGAGAC
TCTGTCCGAGCGGTTCATCCAGAGGCAGGGCGGGCTGCTCTCGGAGGGCC
TCCTGTGGCGCCTCGTGTGCCAGCTGCTGGGCGCGCTGCGGGCGACCCAC
GCGGCCGGGGCGGCGCTCCGCAACGTCCACCCGAGCCGCGTGCTGTACTG
CCTTGTCGGAGACCGGGTGCGGGTGAACTGGGTCGGCTGCCTGGACGTCC
TGGAGTACGAGACGCGCAAGCAGGTCTCCGAGCTGCAGCGGCAAGACATG
GTGGACCTTGGAAGCCTCATCCTGGCGCTGGCGTGCCGACATCCCGTCGC
CGCCGCCTCCCGGGGGGAATCGCTAGCGTTCACGGCTCAACACTACACGC
CCGAGCTGCACAACCTGGCGGCGTCGCTCGTGTCGAAGAAGCCTCCCAGC
GTTTTCGAGGTCTGCGTGGCAACCGCCCATCACACCATGGACGCCATGGA
GAACACGCTGATGGCAAACGGCGCGCTTCAGAGCCACTTGGCAAGCGAGT
ATGATAATGGGCGGCTGCTGCGGCTGCTCCTGAAGCTGGGCACTCTGAAC
GAACGGCCCGACCAGGGAGGGGTCGGGGAGTGGTCGGAGACCGGGGAGCG
TTACATCCTCAAGCTCTTCAGGGACTACCTCTTCCACCAGGTGGATGCGG
ACGGCGAGCCGGTGATGGACTTCGGGCACGTGTACCAGAGCCTGTCGCTC
CTCGACGCCGGTAACGAGGAGAAGATC