mRNA_Ecto-sp13_S_contig1387.3025.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1387.3025.1
Unique NamemRNA_Ecto-sp13_S_contig1387.3025.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1387.3025.1 vs. uniprot
Match: D7FN01_ECTSI (Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN01_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 1.610e-94
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 3 
Query: 1062 MEKSGDGDKKASEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMEQLREFIPRGAMRDTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRLQEAGSSDFNSVKEDLKKGQQVLERELSLFQDLLKQKKLV 1538
            MEK+GDGDKKASEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMEQLREFIPRGAMRDTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRLQE GSSDFNSVKEDLKKGQQVLERELSLFQDLLK+KKLV
Sbjct:    1 MEKAGDGDKKASEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMEQLREFIPRGAMRDTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRLQE-GSSDFNSVKEDLKKGQQVLERELSLFQDLLKKKKLV 158
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BLAST of mRNA_Ecto-sp13_S_contig1387.3025.1 vs. uniprot
Match: A0A7S2XTL1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTL1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.950e-22
Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 3 
Query: 1161 DTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMEQLREFIPRGAMRDTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRLQEAGSSDFNSVKEDLKKGQQVLERELSLFQDLLKQKKLV 1538
            D  VI+WA A++Q   D  FL ELL DL+NE+ AH+E L+  +P       + +AHSIKGAAANLMCHRLR +AL+LE+AG  GT+    G    +++ + L KG + L  E   F  +LK+K+L+
Sbjct:   97 DLVVINWAEAMEQVGDDEEFLHELLGDLFNETQAHVESLKASVPSRDTETVRQKAHSIKGAAANLMCHRLREAALFLEKAGMSGTK----GELTGDALNQTLDKGLEALLTEFDSFGKVLKEKELI 218
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BLAST of mRNA_Ecto-sp13_S_contig1387.3025.1 vs. uniprot
Match: A0A835Z3I2_9STRA (Hpt domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.280e-18
Identity = 48/128 (37.50%), Postives = 78/128 (60.94%), Query Frame = 3 
Query: 1155 PDDTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMEQLREFIPRGAMRDTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRLQEAGSSDFNSVKEDLKKGQQVLERELSLFQDLLKQKKLV 1538
            P    V+DW  A++QC GD  FL+ELLVDLW ES++H+E+L+  +P   + +T++ AH++KGAA NLMC  L  + L LE+    GT      +     + E +K    V++ E++ F++ L ++ L+
Sbjct:   16 PQPLVVVDWTMALEQCGGDEEFLKELLVDLWTESSSHLEELQSTVPARNITETRNIAHTMKGAAGNLMCFALHHACLTLEKTAHEGT-----STIPTEQLFEAMKDALVVIQGEMARFEEYLHKRALI 138
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BLAST of mRNA_Ecto-sp13_S_contig1387.3025.1 vs. uniprot
Match: A0A6S9GU07_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GU07_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 5.350e-14
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = 3 
Query: 1158 DDTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMEQLREFIPRGAMRDT--------QHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRLQEAGSSDFNSVKEDL 1466
            DD E+I W AA++QC+GD  FL+ELL D   E+ AH + L++ +      DT        +  AHSIKGAAANLMC++LR +A  LE+ G  G   +  G S      E L
Sbjct:    9 DDDEIIGWEAALEQCAGDEEFLQELLQDFSVETAAHFQALQKAVDALTPEDTAGDEADAIRRAAHSIKGAAANLMCNKLRDAAQSLEKTGMQGVSGEIEGDSFIELATEGL 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1387.3025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FN01_ECTSI1.610e-9498.11Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2XTL1_9STRA5.950e-2246.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z3I2_9STRA1.280e-1837.50Hpt domain protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6S9GU07_HETAK5.350e-1442.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1387contigEcto-sp13_S_contig1387:827..3888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score295.4
Seed ortholog evalue3e-77
Seed eggNOG ortholog2880.D7FN01
Model size1541
Hectar predicted targeting categorymitochondrion
Exons5
EggNOG OGs2EUJB@1,2SWQ8@2759
Cds size924
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1387.3025.1prot_Ecto-sp13_S_contig1387.3025.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1387 1444..3888 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.8708827-UTR-Ecto-sp13_S_contig1387:826..14431681462739.8708827-UTR-Ecto-sp13_S_contig1387:826..1443Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1387 827..1443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.8804216-CDS-Ecto-sp13_S_contig1387:1443..19261681462739.8804216-CDS-Ecto-sp13_S_contig1387:1443..1926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1387 1444..1926 +
1681462739.888286-CDS-Ecto-sp13_S_contig1387:2409..25081681462739.888286-CDS-Ecto-sp13_S_contig1387:2409..2508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1387 2410..2508 +
1681462739.8967144-CDS-Ecto-sp13_S_contig1387:2967..30751681462739.8967144-CDS-Ecto-sp13_S_contig1387:2967..3075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1387 2968..3075 +
1681462739.9064627-CDS-Ecto-sp13_S_contig1387:3284..34051681462739.9064627-CDS-Ecto-sp13_S_contig1387:3284..3405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1387 3285..3405 +
1681462739.9211464-CDS-Ecto-sp13_S_contig1387:3775..38881681462739.9211464-CDS-Ecto-sp13_S_contig1387:3775..3888Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1387 3776..3888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1387.3025.1

>prot_Ecto-sp13_S_contig1387.3025.1 ID=prot_Ecto-sp13_S_contig1387.3025.1|Name=mRNA_Ecto-sp13_S_contig1387.3025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
MRSLLVRYRTADRVVRGARPEHLLHIRTSAFLEQIPARTSTVTPCQVAPD
PGKFDTALSLPQGKEGELRATVEPPYQSASVGDDPLVQHHPPAEEATAAV
RAAEAQALDVDSSPEQIKLSTASSEDPRSAIPVPKEEVKASSQQPDGHME
KSGDGDKKASEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGDVS
FLEELLVDLWNESNAHMEQLREFIPRGAMRDTQHEAHSIKGAAANLMCHR
LRLSALYLERAGQVGTRLQEAGSSDFNSVKEDLKKGQQVLERELSLFQDL
LKQKKLV*
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mRNA from alignment at Ecto-sp13_S_contig1387:827..3888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1387.3025.1 ID=mRNA_Ecto-sp13_S_contig1387.3025.1|Name=mRNA_Ecto-sp13_S_contig1387.3025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3062bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1387:827..3888+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTTGACTACATGACCGTCACCTTCCCCGAGGGCTGCTGGGGACGTTTT
CTGTAACGCCACGTATTCTTTTTTACCGCGGTGAAACTTAACATGGTTCG
CGTGGTCGTTTCGATGCTCATGTGGACGCTGTATGACAGCTGTGTTGTGG
GTCTTGGGGAACTTGGATTTGGAGTTGGTTGTCGTAAGCACGAAATGCAG
TGGTTTTCTTTTCGCCACGCTGGAAATTGACCGGATTGAAGAGGTATTTG
TAGCAGTATCTTCAATCACCACTTACGTATTCGTAGGTGCTCCCACCTGT
TGACGCGTGGAATATGAGTCACAACCGATTCTTCACACGCACATGCCGGC
ACTTCACCCGGATGCTGTACCACAATACATGAGAAAATCGCACTACAGTC
ATACGAGACAGTGATAAGTGACGACGAACGAGCTGCACGTGCGATAAAAT
TTTTTATGGGCAATGGGTTTGTTGGTTCGTTCAAGACTTGCTCTTGGACT
ATGGAAGAGGGATGCTCGATGTTGCACGCATCATTTTCGTCCGTGTACCG
CTGAACCAACTTGAAGTTTTGCGCGTGTATCTGTGTGTGCACGCGCGTTA
TTGTGTAGATTGTGTCCATGAGATCCCTTCTTGTGCGCTACAGGACGGCT
GACCGAGTCGTTCGCGGAGCGCGCCCCGAACATTTATTGCATATCCGCAC
ATCCGCGTTTCTTGAGCAGATCCCGGCGAGAACATCAACGGTGACTCCGT
GCCAAGTGGCTCCCGATCCCGGGAAATTTGATACGGCGCTCAGTCTACCT
CAAGGCAAGGAAGGAGAACTCCGCGCAACCGTCGAGCCCCCATATCAAAG
CGCATCCGTGGGCGACGACCCTTTGGTTCAACATCACCCACCAGCGGAAG
AGGCAACGGCAGCGGTAAGAGCGGCGGAAGCACAAGCGCTCGACGTCGAT
TCTTCTCCCGAGCAAATCAAGCTCAGCACAGCGAGTAGCGAAGATCCCCG
ATCTGCCATCCCTGTTCCGAAAGAGGAGGTAAAGGCGTCGAGTCAGCAGC
CGGACGGGCACATGGAGAAGTCGGGTGACGGAGACAAGAAAGCGTCCGAG
GTAGGGGTGACAGCGCAGGGATGTGTGTTGATAAAACAAGAAAGTATCCT
TGTTGACATTGCGTGTTTACCTTGCTCGTAAGGAGGTCCGAACGTTCACT
TTTCAATGCTTGCGGAACTATGATATGGTTCTTCCATTTTTTCTTCTGAC
GCACCCACTGCGTCTCGCGAAGCATTACACGGCTGGCGAAAGATTGCACG
GCTCTTGCCGATAGTACTAGCTTGCTCGATACACGGACGTGCATGCTGTG
CCCTTGATCCTCTGTGATAAAGATTACGCATGGCTGTCTTGCACGGTGCC
ACCATCGTACGGGAGCACTCCAACACGTGAGACGATTCCACGTCGCAGGT
AAAGTGCGACGGGGCCTGAATGTGTGTCGAATAAGTACACCACCGCCCTT
GTTTTTTCCATGGGTGAAATAAGCTGCTGCTGATGCGCTGATTCACCGCC
GGCCGTCCGTCGTTCTAACGTACACTGCTGTAGAAGTCCAGCGACCAAGG
GAGTTCGGCAAATCTCGTAGGAGTGCAGCTAGGAGTGCCGGATGACACGG
AGGTCATTGATTGGGCCGCGGCCGTCGACCAGGTACTTGTTGAAGATCCG
GCGTGTGGGTCGGAGATGGTAGTCACGTGAGACTTGGGTGCGTACGCCAC
AAATGATCTTCTTTGGTTGTGTTGTTTTACCATGTGCATGGATGGCAGAT
GCAGTAGAGAAGCTTATTGTAGCTTGCCTCACGCGTGCAGCTAGTTCTGC
CCTCATGTGGAAGCTCTTAAAACTAACAACACCCACGACTACCGAAAGGA
ATACATAGGGCGAAAGACTTTTGGTAAACATGCTTGTGTGCCGACAACTC
CGAAGCGAATTTATGTCACGCGATTCCCCTCTCTAGCGACATCGGGTGGA
TCTCAGGGCCTCTTTTGAACATTGTTCACATCGGCGGATAGATGAACTTG
AGTGAGGTTGGAATCCGCCAGAGCACATTCATGTCGCTGACCTCCCCGCT
GTTGTCGACCGTTTGGGCCTACGTTTTCCGCCACGAAACAGTGTTCGGGA
GACGTTTCTTTCCTTGAGGAACTGCTCGTGGACCTGTGGAACGAGTCCAA
CGCGCATATGGAGCAACTGAGGGAATTCATTCCTCGCGGTGCAATGCGTG
TGAGTGTTTGCGTGTGCGCAACCACCCACAAGCAGCGTGGAGACCATTTG
TGGTTCGTCTGTTGTGAGGAGTGTAGGTGTCAAGAACGAATGTCGATAGC
CTCCGTCTCTTTTTTCCGCTTGTCATTCCCTTGCTGCCAGATCATGGCAC
GATTTCCCTTCATGCCCAAGCTCTTTCACTCTGGTGTATGGCGTTTTGCT
GTGTACAGGACACGCAACATGAAGCTCATTCGATCAAGGGTGCGGCCGCG
AATCTTATGTGCCATCGCTTGCGCCTTTCCGCACTATACCTGGAGAGGGC
CGGCCAAGTTGGCACCAGGCTACAGGAAGGTGAGACAGGAAAGCGCCTCA
AAGGAGACGTGGTGACGGGGCCTAGCTAACTCTAGCTTCAGAAGCCGACT
CGTACACGGAGTACATGCTGCAATTGCTCTCGAAGCGCGGACCTCAAATA
CAACGAGTGTAGGCAGTCGAACATTAAGTGTAAATTCTTGCAGGATTCCG
CGCGAAGTCGGCGAGAAGGAACGAACAGCAGGGAAGGTATCGGATGTGAT
GTGTCTGCACCCGAACAGCGTGCGTTCTGTAGTTAAGTATAGCAGCCCCG
CGGGCCCCGTTTGTATTGTTGCAGTATGGCCTTGTTCTACTTGTTGGCAT
CCGACCCCATTACCGATGACCTCCCTGCTCATGTGGTACCCTGTGGAAGC
AGGTTCAAGCGACTTCAACTCTGTGAAAGAGGACCTCAAGAAGGGCCAGC
AAGTACTCGAGAGGGAGCTCAGTTTATTTCAAGACCTTCTCAAGCAAAAG
AAACTAGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1387:827..3888+

>mRNA_Ecto-sp13_S_contig1387.3025.1 ID=mRNA_Ecto-sp13_S_contig1387.3025.1|Name=mRNA_Ecto-sp13_S_contig1387.3025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1387:827..3888+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGATCCCTTCTTGTGCGCTACAGGACGGCTGACCGAGTCGTTCGCGG
AGCGCGCCCCGAACATTTATTGCATATCCGCACATCCGCGTTTCTTGAGC
AGATCCCGGCGAGAACATCAACGGTGACTCCGTGCCAAGTGGCTCCCGAT
CCCGGGAAATTTGATACGGCGCTCAGTCTACCTCAAGGCAAGGAAGGAGA
ACTCCGCGCAACCGTCGAGCCCCCATATCAAAGCGCATCCGTGGGCGACG
ACCCTTTGGTTCAACATCACCCACCAGCGGAAGAGGCAACGGCAGCGGTA
AGAGCGGCGGAAGCACAAGCGCTCGACGTCGATTCTTCTCCCGAGCAAAT
CAAGCTCAGCACAGCGAGTAGCGAAGATCCCCGATCTGCCATCCCTGTTC
CGAAAGAGGAGGTAAAGGCGTCGAGTCAGCAGCCGGACGGGCACATGGAG
AAGTCGGGTGACGGAGACAAGAAAGCGTCCGAGAAGTCCAGCGACCAAGG
GAGTTCGGCAAATCTCGTAGGAGTGCAGCTAGGAGTGCCGGATGACACGG
AGGTCATTGATTGGGCCGCGGCCGTCGACCAGTGTTCGGGAGACGTTTCT
TTCCTTGAGGAACTGCTCGTGGACCTGTGGAACGAGTCCAACGCGCATAT
GGAGCAACTGAGGGAATTCATTCCTCGCGGTGCAATGCGTGACACGCAAC
ATGAAGCTCATTCGATCAAGGGTGCGGCCGCGAATCTTATGTGCCATCGC
TTGCGCCTTTCCGCACTATACCTGGAGAGGGCCGGCCAAGTTGGCACCAG
GCTACAGGAAGCAGGTTCAAGCGACTTCAACTCTGTGAAAGAGGACCTCA
AGAAGGGCCAGCAAGTACTCGAGAGGGAGCTCAGTTTATTTCAAGACCTT
CTCAAGCAAAAGAAACTAGTCTGA
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