prot_Ecto-sp13_S_contig13867.3023.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig13867.3023.1
Unique Name	prot_Ecto-sp13_S_contig13867.3023.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	164

Homology

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 1.150e-78
Identity = 156/166 (93.98%), Postives = 160/166 (96.39%), Query Frame = 0

Query:    1 QTESDVITKKAGTYVPRDKRKLPSADSSNGNGLHQAAPAPAATTPGAAGAXXXXXXXXXXXXXXXXXXXXXXXXX---AVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 163
            ++ESDV+TKKAGTYVPRDKRKLPSAD+SNGNGLHQAAPAPAATTPGA   XXXXXXXXXXXXXXXXXXXXXXXXX   AVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA
Sbjct:   87 KSESDVVTKKAGTYVPRDKRKLPSADASNGNGLHQAAPAPAATTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 252

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: A0A812XDE7_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XDE7_SYMMI)

HSP 1 Score: 100 bits (248), Expect = 5.870e-24
Identity = 68/165 (41.21%), Postives = 86/165 (52.12%), Query Frame = 0

Query:    1 QTESDVITKKAGTYVPRDKRKLPSADSSNGNGLHQAAP-APAATTPGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 162
            +T+SD++ KK GT+ PR KR      S+  +G   A P AP    P                               VP+P   + +VPH IL+A  LP E    ML  LF+QYPGF E RMAPG  G AFIEF D +QAGIAL  LNGF+LSA + LQL + ++
Sbjct:    6 RTKSDIVAKKDGTFNPRQKRVREEQSSTMEDGGRTAPPPAPHKEFP----------------------------VVKVPKPI--MNNVPHRILFAQNLPDECNDQMLGALFQQYPGFQEVRMAPGKKGIAFIEFQDVVQAGIALQQLNGFQLSAADALQLTYGKQ 140

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: A0A812Y221_SYMMI (Snrpb2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y221_SYMMI)

HSP 1 Score: 100 bits (248), Expect = 4.270e-23
Identity = 66/164 (40.24%), Postives = 87/164 (53.05%), Query Frame = 0

Query:    1 QTESDVITKKAGTYVPRDKRKLPSADSSNGNGLHQAAPAPAATTPGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 162
            +T+SD++ KK GT+ PR KR      S+  +G  +AAP PA                                    P+P   + +VPH IL+A  LP E    ML+ LF+QYPGF E RMAPG  G AFIEF D +QAGIAL  L+GF+LSA + LQL + ++
Sbjct:   85 KTKSDIVAKKDGTFNPRQKRVREEQSSAMEDGA-RAAPPPA--------------------------QYKEPPVAKTPKPI--VNNVPHRILFAQNLPDECNDQMLAALFQQYPGFQEVRMAPGKKGIAFIEFQDVVQAGIALQQLSGFQLSAADTLQLTYGKQ 219

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: A0A836CKH4_9STRA (U2 small nuclear ribonucleoprotein B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.960e-22
Identity = 84/162 (51.85%), Postives = 101/162 (62.35%), Query Frame = 0

Query:    3 ESDVITKKAGTYVPRDKRKLPSADSSNGNGLHQAAPAPAATTPGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQ--AFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 162
            +SDV+TKK GT+VPR+KRK              AA APAA          XXXXXXXX    XXXXXXXXXXX       P+   P N+L+A  LP E TQ MLS LF+QY GF+E RM PG Q  AFIEF D MQA +AL  L GFKL+ T+ L+L++A++
Sbjct:   42 QSDVVTKKTGTFVPREKRKRQEPPKPT------AAAAPAAAPVAPTPMVVXXXXXXXXQQLAXXXXXXXXXXXXXXXXXAPVNP-PSNVLFAENLPAECTQAMLSMLFQQYRGFTEVRMVPGKQGIAFIEFTDDMQASLALQGLAGFKLTPTDTLRLSYAKR 196

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: A0A662Y965_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y965_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.810e-20
Identity = 66/174 (37.93%), Postives = 85/174 (48.85%), Query Frame = 0

Query:    3 ESDVITKKAGTYVPRDKRK------------LPSADSSNGNGLHQAAPAPAATTPGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 162
            ++DVI ++ GT+VPR+KRK            LP A    G     AAP+P A  P                                P PA    +VPH IL+   LP    + MLS LF+QY GF E RM PG  G AF+EF D+ QA IAL  L GFKL+ T+ L+++FA+K
Sbjct:   98 KADVIARREGTFVPREKRKREPKPAADKATQLPGAKKQVGENGSAAAPSPVALPP--------------------------------PPPAQ---NVPHKILFLQELPESCNKEMLSVLFKQYHGFKEVRMVPGKKGLAFVEFGDEAQASIALQGLFGFKLTPTDALKVSFAKK 236

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: A0A059A9L6_EUCGR (Uncharacterized protein n=2 Tax=Myrtales TaxID=41944 RepID=A0A059A9L6_EUCGR)

HSP 1 Score: 92.8 bits (229), Expect = 4.440e-20
Identity = 59/164 (35.98%), Postives = 81/164 (49.39%), Query Frame = 0

Query:    1 QTESDVITKKAGTYVPRDKRKLPSADSSNGNGLHQAAPAPAATTPGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 162
            +T+SD++ K  GT+VPR+KRK            H A  A     P   GA                          VP+   P    P+NIL+   LP E T +ML  LF QYPGF E RM     G AF+E++D+MQ+ +A+ AL GFKL+  NP+ + +A+K
Sbjct:   92 KTKSDIVAKADGTFVPREKRKRHEEKGKKRKDQHDANQAGVGVNPAYPGAYGAMPPLSQVPYPGGAK---------VPEAPAP----PNNILFVQNLPHETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYSDEMQSTVAMQALQGFKLTPQNPMSITYAKK 242

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 1.470e-19
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 0

Query:   76 AVPQPAGPI-GDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 162
            AV Q   P+  +VPH IL+A  LP +  ++ML  LF+QY G+ E RM PG  G AFIEF D+MQAG AL  LNGFKL+  + LQL++ARK
Sbjct:  145 AVQQVEQPVPANVPHRILFAQNLPDDCNEMMLDMLFQQYNGYKEVRMVPGKKGLAFIEFGDEMQAGYALQGLNGFKLTPQDLLQLSYARK 234

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO)

HSP 1 Score: 90.9 bits (224), Expect = 2.270e-19
Identity = 85/164 (51.83%), Postives = 110/164 (67.07%), Query Frame = 0

Query:    1 QTESDVITKKAGTYVPRDKRKLPSADSSNGNGLHQAAPAPAATTPGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARM--APGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 162
            +++SD ++K  GT+V R+KRK     +      HQA  APAA  P +A  XXXXXXXXXXXXXXXXXXXXXXXXX  P          +NIL+A  LP E   +M+  LF+Q+PGF E RM  A  G AFIEF D+MQA +AL AL+ FK++ TNP+Q+++A+K
Sbjct:   87 KSKSDAVSKADGTFVSREKRKKNDEKAERKRREHQAE-APAAGPPASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXPP----------NNILFAQNLPREANNLMIEMLFQQFPGFKEVRMIEAKPGIAFIEFGDEMQASVALQALHNFKITPTNPMQISYAKK 239

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: A0A1S2XVM9_CICAR (U1 small nuclear ribonucleoprotein A isoform X2 n=12 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A1S2XVM9_CICAR)

HSP 1 Score: 90.5 bits (223), Expect = 3.310e-19
Identity = 61/170 (35.88%), Postives = 82/170 (48.24%), Query Frame = 0

Query:    1 QTESDVITKKAGTYVPRDKRKLPSADSSNGNGLHQAAPAPAATTPGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGDVP------HNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPG--GQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 162
            +T+SD+I K  GT+VPR+KRK            H A  A     P   GA                         A+P P G    VP      +NIL+   LP E T +ML  LF QYPGF E RM     G AF+E+ D+MQ+ +A+ AL GFK++  NP+ + +A+K
Sbjct:   92 RTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNPSYPGAYGATP--------------------AIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241

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BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Match: A0A7D9ICF5_PARCT (U1 small nuclear ribonucleo A n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ICF5_PARCT)

HSP 1 Score: 86.3 bits (212), Expect = 4.190e-19
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 0

Query:   77 VPQPAGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQ--AFIEFADQMQAGIALNALNGFKLSATNPLQLAFARK 162
            +P     +  +P+ IL+ T LPPE TQ+ML+ LF Q+PGF E R+ PG    AF+EF +++QAG A +AL GFK++ TN +++ FA+K
Sbjct:    6 IPMQQPDVPALPNKILFLTQLPPETTQMMLAMLFNQFPGFREVRLVPGKSDIAFVEFENEVQAGTAKDALQGFKITPTNAMKITFAKK 93

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig13867.3023.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FNU9_ECTSI	1.150e-78	93.98	RNA binding / nucleic acid binding n=2 Tax=Ectocar...	[more]
A0A812XDE7_SYMMI	5.870e-24	41.21	Hypothetical protein n=1 Tax=Symbiodinium microadr...	[more]
A0A812Y221_SYMMI	4.270e-23	40.24	Snrpb2 protein n=1 Tax=Symbiodinium microadriaticu...	[more]
A0A836CKH4_9STRA	1.960e-22	51.85	U2 small nuclear ribonucleoprotein B n=1 Tax=Tribo...	[more]
A0A662Y965_9STRA	2.810e-20	37.93	Uncharacterized protein n=2 Tax=Nothophytophthora ...	[more]
A0A059A9L6_EUCGR	4.440e-20	35.98	Uncharacterized protein n=2 Tax=Myrtales TaxID=419...	[more]
A0A6V1NUL1_HETAK	1.470e-19	54.44	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A176VE80_MARPO	2.270e-19	51.83	Uncharacterized protein n=2 Tax=Marchantia polymor...	[more]
A0A1S2XVM9_CICAR	3.310e-19	35.88	U1 small nuclear ribonucleoprotein A isoform X2 n=...	[more]
A0A7D9ICF5_PARCT	4.190e-19	46.59	U1 small nuclear ribonucleo A n=2 Tax=Paramuricea ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 91..158 e-value: 1.5E-9 score: 47.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 92..149 e-value: 3.1E-11 score: 42.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 90..162 score: 12.543
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 86..162 e-value: 5.9E-16 score: 60.3
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 2..162
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 2..162
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 61..161

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig13867	contig	Ecto-sp13_S_contig13867:118..2559 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig13867.3023.1	mRNA_Ecto-sp13_S_contig13867.3023.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig13867 118..3323 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig13867.3023.1 ID=prot_Ecto-sp13_S_contig13867.3023.1|Name=mRNA_Ecto-sp13_S_contig13867.3023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
QTESDVITKKAGTYVPRDKRKLPSADSSNGNGLHQAAPAPAATTPGAAGA
AAVPPASALPPVPPPAAIVAGAPPPAVPQPAGPIGDVPHNILYATGLPPE
ITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLS
ATNPLQLAFARKA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf