mRNA_Ecto-sp13_S_contig13864.3021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13864.3021.1
Unique NamemRNA_Ecto-sp13_S_contig13864.3021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13864.3021.1 vs. uniprot
Match: A0A6H5KHA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA7_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 7.560e-49
Identity = 89/123 (72.36%), Postives = 96/123 (78.05%), Query Frame = 3 
Query:  969 MACSDGDSFTIDSDVTYETSQSFNGCYYASVDTFNDETHYFLDGDEVGGTPGVYSSAELHDD---HGVWALAYYTTDGEFSRRCKDAAEEDSSTLHPADVLQWDCKDADEPDSVLYTDIDAAV 1328
            MACSDGDSFTIDSDVTYE S SF+GCY AS DTFN ET YFLDGDE  G PG+YSS    DD   HG W L YYTTDGEF RRCKDA EEDSSTLHPA+V+QWDCK+  + D  +Y DIDAAV
Sbjct:    1 MACSDGDSFTIDSDVTYEDSLSFDGCYEASADTFNSETMYFLDGDEFIGYPGIYSSNNFDDDGDEHGTWVLGYYTTDGEFFRRCKDADEEDSSTLHPAEVVQWDCKEYGDTDEDVYLDIDAAV 123
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BLAST of mRNA_Ecto-sp13_S_contig13864.3021.1 vs. uniprot
Match: D7G7I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.720e-15
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 3 
Query: 1011 VTYETSQSFNGCYYASVDTFNDETHYFLDGDEVGGTPGVYSSAELHDDHGVWALA-YYTTDGE-----FSRRCKDAAEEDSSTLHPADVLQWDCKDADEPDSVLYTDIDAAVTITCGC 1346
            V  + + + +GCY  +  + ND   YFLDG E GG+  VY+S+   DDH VW +A  Y  D E      S  CKDA E+D++TLHP +V+QW+C    + D   YT +D  + ITC C
Sbjct:   10 VEVDYNSAVDGCYEDTTTSVNDLDGYFLDGVEAGGSSIVYASSSFRDDHFVWVVANVYDIDVEEGIFDVSITCKDAYEDDATTLHPVEVIQWNCYSTADED---YTRLDE-IEITCSC 123
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BLAST of mRNA_Ecto-sp13_S_contig13864.3021.1 vs. uniprot
Match: A0A6H5K4G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 5.600e-9
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 3 
Query:  990 SFTIDSDVTYETSQSFNGCYYASVDTFNDETHYFLDGDEVGGTPG-VYSSAELHD---DHGVWALAYYTTDGEFSRRCKDAAEEDSSTLHPADVLQWDCKDADEPDSVLYTDIDAAVTITCGC 1346
            SF ++ D T E     +GCY  +  + ND   YFLDG E GG+   V+  A ++D   + G++  A  TT       CKDA EED++TLHP +V+QW+C    + D   YT +D  + ITC C
Sbjct:    7 SFYLNIDYTSEV----DGCYEDTTTSINDLDGYFLDGVEAGGSSVFVWVVANVYDMDVEEGIFDAA--TT-------CKDAYEEDATTLHPVEVIQWNCYSTADED---YTRLDE-IEITCSC 112
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BLAST of mRNA_Ecto-sp13_S_contig13864.3021.1 vs. uniprot
Match: A0A6H5KKC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.100e-8
Identity = 28/34 (82.35%), Postives = 28/34 (82.35%), Query Frame = 1 
Query: 2473 SSNAGPPPWSTARSPQAKPTTLPPHPHLHCACPT 2574
            SSNAGP P    RSPQAKPTT PPHPHLHCACPT
Sbjct:   28 SSNAGPHPCPMTRSPQAKPTTRPPHPHLHCACPT 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13864.3021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KHA7_9PHAE7.560e-4972.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I5_ECTSI6.720e-1541.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4G7_9PHAE5.600e-939.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKC2_9PHAE4.100e-882.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13864contigEcto-sp13_S_contig13864:1005..4407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2624
Hectar predicted targeting categoryother localisation
Exons3
Cds size1116
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.5834816-UTR-Ecto-sp13_S_contig13864:1004..17471681462739.5834816-UTR-Ecto-sp13_S_contig13864:1004..1747Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13864 1005..1747 +
1681462739.6241126-UTR-Ecto-sp13_S_contig13864:3642..44071681462739.6241126-UTR-Ecto-sp13_S_contig13864:3642..4407Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13864 3643..4407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.593746-CDS-Ecto-sp13_S_contig13864:1747..21611681462739.593746-CDS-Ecto-sp13_S_contig13864:1747..2161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13864 1748..2161 +
1681462739.6042209-CDS-Ecto-sp13_S_contig13864:2743..31881681462739.6042209-CDS-Ecto-sp13_S_contig13864:2743..3188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13864 2744..3188 +
1681462739.6134374-CDS-Ecto-sp13_S_contig13864:3385..36421681462739.6134374-CDS-Ecto-sp13_S_contig13864:3385..3642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13864 3386..3642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13864.3021.1prot_Ecto-sp13_S_contig13864.3021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13864 1748..3642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13864.3021.1

>prot_Ecto-sp13_S_contig13864.3021.1 ID=prot_Ecto-sp13_S_contig13864.3021.1|Name=mRNA_Ecto-sp13_S_contig13864.3021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=372bp
MSLHPRRLLYARLPLVGVDRVVYQAIDQDQGLDQEQSSHHAIESLLADFG
LRRPYYLLLRAVTVVPREIHRRRSDMACSDGDSFTIDSDVTYETSQSFNG
CYYASVDTFNDETHYFLDGDEVGGTPGVYSSAELHDDHGVWALAYYTTDG
EFSRRCKDAAEEDSSTLHPADVLQWDCKDADEPDSVLYTDIDAAVTITCG
CDSPTPAPTTSETPAPAPSPAPSPAPSPAPSPAPSPTPSPTSPSRATPST
PSPAALSPTTPSPTTPSTALPASVSPELMAETSSAEATPVGAIAGGAVAG
VLAVGAIILAVLFKSGRSKTCRGGSRDTPADDVIAPASASGSVPTQGTRV
ETTAAHTARQYPVAHQYPAAT*
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mRNA from alignment at Ecto-sp13_S_contig13864:1005..4407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13864.3021.1 ID=mRNA_Ecto-sp13_S_contig13864.3021.1|Name=mRNA_Ecto-sp13_S_contig13864.3021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3403bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13864:1005..4407+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAAATACTGTATTGTTCCATGGTTTCTTGTTAACGCGGGAAATGATAC
CAACACGAAAAACCATTCACGAAGAAAGCCCCGCAAGTTTTGCTTACCAA
TTTTTCTATCATGGCAAAACCTCGGGGCACATATAGGCAGAACTAGCTTC
GGAGGAACTTAAAAAACCCCGCACTGGTCGTTCAATAGTGTCGGTTTCAA
GGTTCGAGTCGAAGCATGTAGAGGCATTGTTTGCGTCGGCACCAAGGTTC
CCGGTGTGCTACGTGGACCTGCCGGCGATTATATTCCTCCCGGACGTACA
ACATACGTAAAGATGCTTACGCAGCCGACGGCCATGGTGGTCTCCATATC
AGAACGTGATTTCTCGGAACATTCCTTGGGTGTTCCTTGGGTAGGCGACG
CTCGTGAAGCATGTGCAGCGACCTACGGTAGATTTTACCCCTTCTTTGCA
CCGCGGCACAGTCTTACACCTAAAGTGACCTAGCCCTCACCCCCTCTTGT
GCCTTGTATTCAGGCGTCCAGCTATCCTTCACTCGCGTGTGAAGGTATAC
AATCCTCGTGGTCAGATTGTGTAGCATGTAGCCGTGGGTGTTACGATGAT
ATGTATGCATATTGTTGATGGCCATCAATTCGACGACTCTCTAAACGGCT
CTAGTGTTTGAAGAGAACCCAAAACACACGCAAACACACGCCGTGTCGCC
GTGGTCATCGTGCTTTATCCGCACCCCCCCCCCCTTGATTTCTATGTCTT
TACACCCTCGCCGTCTCCTCTATGCTCGACTACCCCTCGTAGGTGTGGAT
CGGGTTGTGTATCAAGCGATCGATCAAGATCAAGGTCTCGATCAAGAACA
GAGCTCACATCACGCTATCGAGAGCTTGCTTGCCGACTTCGGTCTTCGCC
GTCCATACTACCTGCTGCTGAGAGCAGTCACCGTTGTCCCTCGCGAGATA
CACAGGCGTCGTTCCGACATGGCTTGCTCGGACGGGGATTCTTTCACTAT
CGATTCTGACGTCACCTACGAGACTTCCCAAAGCTTTAACGGTTGCTATT
ACGCGTCCGTGGATACCTTCAATGATGAAACCCATTACTTTTTGGACGGA
GACGAGGTCGGTGGCACACCGGGGGTGTATTCTAGTGCTGAACTTCATGA
CGATCATGTGAGTGAGGCATCATAATTTTTCAGAGGTGTGAGGTTGGCCA
TGTTTTTAGGTATTTTGTCGGGTCTTGCACCCTGACTTTGCGAGATTACG
TTGGCGCATGGAATGAATGGTGGTGTGGTCGGTGCAGTAAGTAGCCTTGG
ATTGGACCAATAAAGCTGCCCGCTCAGTTTCATCAACATGTCATGGATGA
GTCTTGACCGAGTGTAAGGTCGGGATTCTGAGAATTCCCATGTACCCCGC
ACTCTACATTCTAGAAAAAATGTTTCGTGACACCTATTCAAGTACATTTT
TATCACGTAAATATGATCTTAGCATGGTCAGTCATCACAGAGCGTCACGG
CCGGGCCATCATCTGTCGACACAGGGCATTCAGGACACTCGTTGGTTTTG
TCCAGATCGTTGGTGTTCGCCCTATACGAATCGTTCATGTGTCCTGTCGA
ACGCCACAGGTCTCTGTAACAAATATTGAACTAATCGGTGTGGACGATTC
GGCTTGGGTACGCCGTGGAAAATCGTGTGTCACGCCGATGTGGCAGACTC
TTGACTCCGTACTGCCGCGTGGACGACGAAATATTGCAGGGTGTCTGGGC
ACTAGCATATTATACGACGGACGGGGAATTCTCTCGCAGATGCAAAGACG
CTGCAGAGGAAGATTCGTCCACACTGCATCCTGCAGACGTCTTGCAGTGG
GACTGCAAGGACGCTGACGAACCTGATTCTGTCCTGTATACAGATATCGA
CGCGGCGGTGACCATTACCTGTGGCTGTGACTCTCCAACCCCGGCGCCGA
CTACCTCTGAAACTCCCGCTCCGGCTCCCTCTCCGGCTCCCTCTCCGGCT
CCCTCTCCGGCTCCCTCTCCGGCTCCCTCTCCAACTCCTTCTCCGACTAG
TCCCTCTCGCGCTACTCCAAGTACTCCCTCTCCGGCCGCCCTCTCTCCGA
CTACTCCGTCGCCCACTACTCCCTCTACCGCACTACCCGCAAGCGTTTCA
CCGGAGTTGATGGCGGAAACGTCTTCCGCAGAGGGTGAGCAGTTGAGATA
CGGTAGTGCTGTTCTAACATGGTTTGCTCGTCCGTCAGGGCAGGGTGACT
GGAGGTCAAAGCGAGGGCCAGAACCGTCCGTTCTCTAACTTGCACTTGTG
CACCGCAAGCTTCTTAGGCTTCAGCATTAACTCGTTTCTGGCTGTTTCAA
TTTGGTCCGTTTAACTCTTGTGCCATCGCAGCAACTCCGGTGGGCGCCAT
CGCTGGAGGAGCAGTGGCGGGCGTGTTGGCGGTTGGCGCCATCATCCTGG
CCGTCCTCTTCAAGAGTGGTCGCTCGAAGACGTGCCGCGGGGGTTCGCGA
GACACCCCTGCTGATGACGTCATCGCGCCGGCTTCTGCTAGCGGCTCGGT
GCCGACCCAAGGGACGCGGGTTGAGACCACCGCAGCCCACACTGCGCGTC
AATATCCCGTTGCCCACCAGTACCCGGCGGCGACATGACTCGAGTTGCAG
GTCTTGCGACGCGAGGAGTATTCTACTCTCGCCAGTCTTCTTCGCCTGCG
GCTTCTGCAGAGCGCCGCCGCTGGATCAATAGGCACACCCGCTACATTAG
CAGGGATGCCTTCGTCCGGTGACCGATGACCTCAATGGTCCGACAGAAGG
GGGTTGAATTGACTCACTCAAAAGGATGTTGACTTTGAATCTGCCAAGGC
GGGGTTCGCAGTTTGGTTGGGTGGCTTGTTTTCCATAAGCAATAAGTCAA
GATCCCGTATCGTCTCGGGTGTATCAATACGTAAGCGTGTGTGCTCTGTA
GTCCATGTATTTTAGCCCTCACTTTTGCGGCCTCCGCGTCGAATGCATGT
ATTCTCGTGCTCGTAGGGTGTCGGTATTACAGGATGTTCGTGCGCGTTCT
TGCTGGAAAGCCCTCCTGAGGCCGTGTATCGCAGATCACAATAGGGTAGA
GTAAAATGCAGACGCGGTATCGCCTGAAACAATGACGCATCTGAGCAAAC
ACGTTGAACCATTTCGAGGTCCACAAGGGTCACGTTCGGCGTGATTGCCC
TCCCCGCTCTGTCTAACGCCCATCGTAGCTAGATTGCGACCTTCACCCTG
CTCTTCGAATGCCGGACCTCCTCCCTGGTCTACGGCGCGCTCCCCTCAAG
CGAAGCCCACCACCCTACCACCGCACCCGCATCTTCACTGTGCTTGTCCA
ACGGCATTCATGCGGCGCGTCTTTGGTCTATGTACATGTAGCTCGAAATG
CAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13864:1005..4407+

>mRNA_Ecto-sp13_S_contig13864.3021.1 ID=mRNA_Ecto-sp13_S_contig13864.3021.1|Name=mRNA_Ecto-sp13_S_contig13864.3021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13864:1005..4407+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTTACACCCTCGCCGTCTCCTCTATGCTCGACTACCCCTCGTAGG
TGTGGATCGGGTTGTGTATCAAGCGATCGATCAAGATCAAGGTCTCGATC
AAGAACAGAGCTCACATCACGCTATCGAGAGCTTGCTTGCCGACTTCGGT
CTTCGCCGTCCATACTACCTGCTGCTGAGAGCAGTCACCGTTGTCCCTCG
CGAGATACACAGGCGTCGTTCCGACATGGCTTGCTCGGACGGGGATTCTT
TCACTATCGATTCTGACGTCACCTACGAGACTTCCCAAAGCTTTAACGGT
TGCTATTACGCGTCCGTGGATACCTTCAATGATGAAACCCATTACTTTTT
GGACGGAGACGAGGTCGGTGGCACACCGGGGGTGTATTCTAGTGCTGAAC
TTCATGACGATCATGGTGTCTGGGCACTAGCATATTATACGACGGACGGG
GAATTCTCTCGCAGATGCAAAGACGCTGCAGAGGAAGATTCGTCCACACT
GCATCCTGCAGACGTCTTGCAGTGGGACTGCAAGGACGCTGACGAACCTG
ATTCTGTCCTGTATACAGATATCGACGCGGCGGTGACCATTACCTGTGGC
TGTGACTCTCCAACCCCGGCGCCGACTACCTCTGAAACTCCCGCTCCGGC
TCCCTCTCCGGCTCCCTCTCCGGCTCCCTCTCCGGCTCCCTCTCCGGCTC
CCTCTCCAACTCCTTCTCCGACTAGTCCCTCTCGCGCTACTCCAAGTACT
CCCTCTCCGGCCGCCCTCTCTCCGACTACTCCGTCGCCCACTACTCCCTC
TACCGCACTACCCGCAAGCGTTTCACCGGAGTTGATGGCGGAAACGTCTT
CCGCAGAGGCAACTCCGGTGGGCGCCATCGCTGGAGGAGCAGTGGCGGGC
GTGTTGGCGGTTGGCGCCATCATCCTGGCCGTCCTCTTCAAGAGTGGTCG
CTCGAAGACGTGCCGCGGGGGTTCGCGAGACACCCCTGCTGATGACGTCA
TCGCGCCGGCTTCTGCTAGCGGCTCGGTGCCGACCCAAGGGACGCGGGTT
GAGACCACCGCAGCCCACACTGCGCGTCAATATCCCGTTGCCCACCAGTA
CCCGGCGGCGACATGA
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