mRNA_Ecto-sp13_S_contig13861.3018.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13861.3018.1
Unique NamemRNA_Ecto-sp13_S_contig13861.3018.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13861.3018.1 vs. uniprot
Match: A0A6H5JA09_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA09_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 1.230e-100
Identity = 208/240 (86.67%), Postives = 216/240 (90.00%), Query Frame = 2 
Query:  374 KGVREEQGELWGISNLMKFSGESMLLELRQKYGNGLPPLLPDSKDGLVMEPQTNVVNIVNSYAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALEAGGAGGRSQNAELGGVVMRHDEMVAADREQELPPGSQESIAEVDMMDEQSSDDEAPGVEGGGEDNS----DPFTAPSASTSAGAAPGWPSMFDTATEERDAGKENTTPAVSSAASATTDLGGRVQLPPDLDESRVGDVRQRH 1081
            +GVREEQGELWGISNLMKFSGESMLLELR K+GNGLPPLLPDSKDGLVMEPQTNVVNI+NS+AAAG XXXXXXXXXXXXXXXXXXXXXXXXXXXX         RSQNAELGGVVMRHDEMVAADREQELPPGSQESIAEVDMMD+QS+DDEAPGV GGGEDNS    DP TAPS S SAGAAPG PSMFDTAT+ERD G+ENTTPAVSSAASATTDLGG VQL PDLDESRVGD RQRH
Sbjct:  340 QGVREEQGELWGISNLMKFSGESMLLELRHKFGNGLPPLLPDSKDGLVMEPQTNVVNIINSFAAAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSQNAELGGVVMRHDEMVAADREQELPPGSQESIAEVDMMDDQSTDDEAPGVVGGGEDNSIVSADPSTAPSVSRSAGAAPGGPSMFDTATQERDVGEENTTPAVSSAASATTDLGGPVQLTPDLDESRVGDARQRH 579
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BLAST of mRNA_Ecto-sp13_S_contig13861.3018.1 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 7.000e-97
Identity = 209/240 (87.08%), Postives = 218/240 (90.83%), Query Frame = 2 
Query:  374 KGVREEQGELWGISNLMKFSGESMLLELRQKYGNGLPPLLPDSKDGLVMEPQTNVVNIVNSYAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALEAGGAGGRSQNAELGGVVMRHDEMVAADREQELPPGSQESIAEVDMMDEQSSDDEAPGVEGGGEDNS----DPFTAPSASTSAGAAPGWPSMFDTATEERDAGKENTTPAVSSAASATTDLGGRVQLPPDLDESRVGDVRQRH 1081
            +GVREEQGELWGISNLMKFSGESMLLELRQKYGNGLPPL+PDSKDGLVMEPQTNVVNIVNSYAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           QNAELGGVVMRHDEMVAADRE+ELPPGSQESIAEVDMMD+QS+DDEAPGV G GEDNS    DPFTAPS S SAGAAP  PS+FDTAT+ER+A +ENTTPAVSSAASATTDLGGRVQLPPDLDESRVGDVRQRH
Sbjct:  908 QGVREEQGELWGISNLMKFSGESMLLELRQKYGNGLPPLVPDSKDGLVMEPQTNVVNIVNSYAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNAELGGVVMRHDEMVAADREEELPPGSQESIAEVDMMDDQSTDDEAPGVVGSGEDNSIVSADPFTAPSVSRSAGAAPRGPSIFDTATQERNAAEENTTPAVSSAASATTDLGGRVQLPPDLDESRVGDVRQRH 1147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13861.3018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA09_9PHAE1.230e-10086.67Helicase C-terminal domain-containing protein n=1 ... [more]
D7FIQ3_ECTSI7.000e-9787.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13861contigEcto-sp13_S_contig13861:979..3781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score295.4
Seed ortholog evalue2.2e-77
Seed eggNOG ortholog2880.D7FIQ3
Model size1082
KEGG koko:K11130,ko:K20098
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.histone H2A-H2B dimer displacement
EggNOG OGsCOG0553@1,KOG0387@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-27_000640.2
Cds size660
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13861.3018.1prot_Ecto-sp13_S_contig13861.3018.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13861 979..3360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.3685272-CDS-Ecto-sp13_S_contig13861:978..12541681462739.3685272-CDS-Ecto-sp13_S_contig13861:978..1254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13861 979..1254 -
1681462739.3795557-CDS-Ecto-sp13_S_contig13861:1672..18221681462739.3795557-CDS-Ecto-sp13_S_contig13861:1672..1822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13861 1673..1822 -
1681462739.3887317-CDS-Ecto-sp13_S_contig13861:2016..21111681462739.3887317-CDS-Ecto-sp13_S_contig13861:2016..2111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13861 2017..2111 -
1681462739.3999088-CDS-Ecto-sp13_S_contig13861:2796..28511681462739.3999088-CDS-Ecto-sp13_S_contig13861:2796..2851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13861 2797..2851 -
1681462739.409226-CDS-Ecto-sp13_S_contig13861:3276..33601681462739.409226-CDS-Ecto-sp13_S_contig13861:3276..3360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13861 3277..3360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.417606-UTR-Ecto-sp13_S_contig13861:3360..37811681462739.417606-UTR-Ecto-sp13_S_contig13861:3360..3781Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13861 3361..3781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13861.3018.1

>prot_Ecto-sp13_S_contig13861.3018.1 ID=prot_Ecto-sp13_S_contig13861.3018.1|Name=mRNA_Ecto-sp13_S_contig13861.3018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
MKFSGESMLLELRQKYGNGLPPLLPDSKDGLVMEPQTNVVNIVNSYAAAG
STAAAEEDAQQREAASGEEEDEEEEFKDDALEAGGAGGRSQNAELGGVVM
RHDEMVAADREQELPPGSQESIAEVDMMDEQSSDDEAPGVEGGGEDNSDP
FTAPSASTSAGAAPGWPSMFDTATEERDAGKENTTPAVSSAASATTDLGG
RVQLPPDLDESRVGDVRQRH
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mRNA from alignment at Ecto-sp13_S_contig13861:979..3781-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13861.3018.1 ID=mRNA_Ecto-sp13_S_contig13861.3018.1|Name=mRNA_Ecto-sp13_S_contig13861.3018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2803bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13861:979..3781- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCACGTCGGGTGGGTTGCTGCTGTCCGTGCTCCCGTGCGCACTTGGCG
CTTGTGTCAGCGGGCAGCTGGTGTGTGTCTTTGACGCCCACTTCTTCCCG
ACAGCGGTGCTAGTAGCCCCTTCCCGACAATCTTAGTCTCGCCTAGTGCA
AAAGAGGCTGACCGATGACAAAGGGTTATGATGTGTTCCAAGAAGCAATG
TCTGCAGTGATCAAGGGAGATGTCTCGTGTGCATGTGTGTACTCGCTCAT
CCTACGCCGGAGCAGAGCGGGATGCGAAGCCTGTAGTGACATGGCTCGAG
ACAGTTCGCTTCGTCTTTTTCTTCGTTGTCCCCGTCGTACCATGCTTTGT
TTTGCGCGTATGCTCGTGTTTGGAAGGGAGTTCGTGAGGAGCAGGGGGAA
CTGTGGGGTATCAGCAACCTCATGAAGTTCTCGGGAGAGTCGATGCTCCT
CGAGCTAAGACAGAAGTACGGCAATGGTCTGCCGCCGCTTTTACCTGACT
CCAAGGTGTGTCTAAACGGCGGGTTTGAACTGATTGTAACGCACAAGTCG
CTGCAGGTTTTAGAAGCAATCATGCACACGTACACGTTACCACCTTACTG
TTGGCTTGCTGCCGGACGGGCAACCCTGCGACAGTTTCCTTGCCTGTTGA
AGCAGCAGAGATCTAACGCTTGTCGGAATCATCGTGTACCTTGGTGCACG
TCGTGGCTTCATTCGTTCGATACCCTTCACACTGTATCCTTGTTACGTTC
GGGTTGCTGCGCCACACGCGCAAGAAAGTACGCGTTTCCCCGCCAACGCC
CACTTATCCCCGCCTTAGTCGCCTCCACTACCTTCCGGGGACCCCTCTCG
TCCCAGCCCGTTAGTACTCCCTCGATTCACTCCAAGTATCCGCGGTTTTC
CCAACTTGGTGCGCTGTCCCGTAACAACAGGATGGCCTGGTGATGGAACC
GCAGACGAACGTCGTGAACATCGTCAACAGCTACGGTAGGTGGCCTCATT
GAGAACGCATCACCCCCCGAGTCTAGGCCAAGGTTGGGTACATCTTGAAG
AAAATGTGTGCATGCCTAAAAATACAGTAGAAAATGTCGATATGAAACCC
GGAAAAGACTACGACGCTCAGTCACACGGGGAAAAGATGGAGACTTCCCA
TCCGCCCTTTTTTCCTGACCAGCGAAAGATCGAAAAAAGGACGAAATGAC
ACAATCAAATCCTGGTTCGGGTGAACCGCAATCGAACCACACGTCGGGGC
ACGCCGGGCCTGGTTACACGCCCGGCGCGTGCCCCATGTGCCCATCAAAA
TACCCCGACACGCACACTAGCCATCGGGAAGAGGAGGAGAGCGGGAAACT
GACAGAGATAGAGATGGACAGGCAGAAAGAGATCGGGACACACAGGACCC
AAGACACCACACAGGTTATTGGGCGTCGCTAGCGCTGACGGTTGTTGAGT
GTGTCCGTGTTGATGCTGGTGTGCTCGTAGTGCTACCCGCGTGCATGTTG
AATCTCGCATGCACGCGCCCTGCGAGAAAGCAAGGGCGTCTCGTGGTTGT
GATGTGACAGTATATGGGCGAGAATGGTCTGGCTTGTTATCTAATGCACC
GCCGTTCTGCGTTACGCTTCCCGCATATATCATGCTGTGTTTTGTTCCCT
CTCACGGTTGCACTCATCAGCCGCCGCCGGTAGCACCGCCGCGGCAGAAG
AGGACGCCCAGCAGCGCGAGGCGGCCAGCGGGGAAGAGGAGGATGAAGAA
GAGGAGTTTAAAGACGTGAGCGGCTGACATATTCGTTGGTCCCCACTATC
AAGTCTTTCGAAGTATTAGCTTCCCGGCTCACGCTACGAATTGTTTCATG
GTATTCGATCTCACACAAGAGACCGTGGAAGTTCATGTGAGACACGTGTC
TCTCGCGCACGTTGCTCCGACAAGATGATTTTGAGCGACGAGATTTTACG
CATTTCCAGGATGCCTTGGAAGCTGGCGGTGCGGGAGGGCGAAGCCAGAA
CGCCGAGCTCGGTGGCGTGGTGATGCGGCACGATGAGATGGTGGCCGCGG
ATAGGGAGCAAGAGCTCCCTCCAGGATCTCAGGAGAGCATCGCTGAAGTC
GACATGATGGTGAGCCTGTGGGCGGAAGGTTAGGCGATGTGGCTGGAGGG
GGGGAACTCCAAGGGAAACATTCTGGTGCTCGAACGGTACTTGTTGTTTT
TTTTTTCCCGGACTGGGGGAAGCATTGATAACGTCAAGGGCAAGGAATAC
GGGTGGGGAGGAGGAACAAGAGGAGGCGCATCACCTTCGTGTGGAGTGTT
GGTGTTTTCGAATGTGCACCCCCTGCTCGGGTTCTGGGTGCTTGTTGGTG
CAGGAGTTAGGTGGTGCTTTGGGCCATGTTGCAGAGATCTACACAAAAGA
CACTTTTGTAATGACAAGTCTACGTCGAAGGAGCACCCTCAATAATGCGT
GCTGAAATGATTGATGCTTGTGCTCAACGTCCCCCATGCGCACAATCTCA
CCACCCGTCATATACTTGAACCGACAGGATGAGCAGAGCTCCGACGATGA
AGCACCGGGCGTCGAAGGCGGCGGCGAAGACAACAGCGACCCATTTACGG
CGCCATCGGCTAGCACATCTGCTGGTGCCGCCCCGGGATGGCCTTCGATG
TTCGACACGGCCACCGAGGAGCGAGACGCAGGCAAGGAGAACACGACGCC
TGCCGTTTCTTCGGCTGCCAGTGCCACGACCGACCTCGGTGGCCGCGTGC
AGCTCCCTCCTGACCTAGATGAGAGCAGGGTTGGCGATGTTCGGCAGCGT
CAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13861:979..3781-

>mRNA_Ecto-sp13_S_contig13861.3018.1 ID=mRNA_Ecto-sp13_S_contig13861.3018.1|Name=mRNA_Ecto-sp13_S_contig13861.3018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13861:979..3781- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTTCTCGGGAGAGTCGATGCTCCTCGAGCTAAGACAGAAGTACGG
CAATGGTCTGCCGCCGCTTTTACCTGACTCCAAGGATGGCCTGGTGATGG
AACCGCAGACGAACGTCGTGAACATCGTCAACAGCTACGCCGCCGCCGGT
AGCACCGCCGCGGCAGAAGAGGACGCCCAGCAGCGCGAGGCGGCCAGCGG
GGAAGAGGAGGATGAAGAAGAGGAGTTTAAAGACGATGCCTTGGAAGCTG
GCGGTGCGGGAGGGCGAAGCCAGAACGCCGAGCTCGGTGGCGTGGTGATG
CGGCACGATGAGATGGTGGCCGCGGATAGGGAGCAAGAGCTCCCTCCAGG
ATCTCAGGAGAGCATCGCTGAAGTCGACATGATGGATGAGCAGAGCTCCG
ACGATGAAGCACCGGGCGTCGAAGGCGGCGGCGAAGACAACAGCGACCCA
TTTACGGCGCCATCGGCTAGCACATCTGCTGGTGCCGCCCCGGGATGGCC
TTCGATGTTCGACACGGCCACCGAGGAGCGAGACGCAGGCAAGGAGAACA
CGACGCCTGCCGTTTCTTCGGCTGCCAGTGCCACGACCGACCTCGGTGGC
CGCGTGCAGCTCCCTCCTGACCTAGATGAGAGCAGGGTTGGCGATGTTCG
GCAGCGTCAT
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