mRNA_Ecto-sp13_S_contig1386.3015.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1386.3015.1
Unique NamemRNA_Ecto-sp13_S_contig1386.3015.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: D8LC93_ECTSI (CCHC-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC93_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 5.140e-66
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDAGAPMQAVAEESD 369
            MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDAGAPMQAVAEESD
Sbjct:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDAGAPMQAVAEESD 111
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: A0A835YWX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 3.620e-45
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGG---GADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQ 321
            MPATAGRVRMPH NRVSSSSALKMTGIWTNTIGYDPYAAEGG    A A D  NA+EQAQGLMALAKLSN+GVTE RGACKKCG VGHLTFQCRNH+Q
Sbjct:    1 MPATAGRVRMPHNNRVSSSSALKMTGIWTNTIGYDPYAAEGGEAAAAAAADAENAYEQAQGLMALAKLSNEGVTESRGACKKCGMVGHLTFQCRNHLQ 98
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: A0A2D4C9D1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9D1_PYTIN)

HSP 1 Score: 142 bits (357), Expect = 2.090e-36
Identity = 70/98 (71.43%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVD 330
            MPATAGRVRMPH NR+ SS+ALKMTGIW NTIGYDPYAAEG     +   +++EQA+GLMALAKLSNQG  E RGACKKCG +GHLTFQCRN +   D
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEGEEQQGQVSQSSYEQAKGLMALAKLSNQG-NEVRGACKKCGMLGHLTFQCRNFLDMGD 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: A0A2P4YHG3_9STRA (Zinc ion binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHG3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.850e-34
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 318
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TIGYDPYAAEG     E    ++EQA+GLMALAKLSN+   + RGACKKCG VGHLTFQCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEG--EKKETSETSYEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 91
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: A0A6A3SK00_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SK00_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.100e-33
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 318
            MPATAGRVRMPH NR+ SS+ALKMTGIW NTIGYDPYAAE    +  D   +FEQA+GLMALAKLSN+   + RGACKKCG VGHLTFQCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEDEKQETSD--TSFEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 91
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: A0A329RX20_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX20_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.710e-33
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 318
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTIGYDPYAAEG     E    ++EQA+GLMALAKLSN+  ++ RGACKKCG VGHLTFQCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGE-QQGETSETSYEQAKGLMALAKLSNKS-SDVRGACKKCGMVGHLTFQCRNHL 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: A0A833TGJ4_PHYIN (Zinc knuckle n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TGJ4_PHYIN)

HSP 1 Score: 137 bits (346), Expect = 4.760e-33
Identity = 71/111 (63.96%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDAGAPMQAVAEESD 369
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTIGYDPYAAEG     E    + EQA+GLMALAKLSN+   + RGACKKCG VGHLTFQCRNH+     G   + ++ +SD
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGE-QQGETNETSLEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL----GGEEKRVMSSDSD 105
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: A0A0W8C9S2_PHYNI (CAX-interacting protein 4 n=17 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9S2_PHYNI)

HSP 1 Score: 137 bits (346), Expect = 5.690e-33
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 318
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTIGYDPYAAEG     E    ++EQA+GLMALAKLSN+   + RGACKKCG VGHLTFQCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWXNTIGYDPYAAEGE-KQGETSETSYEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: A0A3M6VM93_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM93_9STRA)

HSP 1 Score: 136 bits (343), Expect = 9.230e-33
Identity = 67/94 (71.28%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 318
            MPAT+GRVRMPH NR+ SS+ALKMTGIW NTIGYDPYAAE      E    ++EQA+GLM LAKLSN+G ++ RGACKKCG VGHLTFQCRNH+
Sbjct:   15 MPATSGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAED--EKKETTETSYEQAKGLMTLAKLSNKG-SDVRGACKKCGKVGHLTFQCRNHL 105
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Match: A0A8K1FHX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHX2_PYTOL)

HSP 1 Score: 135 bits (341), Expect = 2.430e-32
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:   37 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 318
            MPA+AGRVRMPH NR+ SS+ALKMTGIWTNTIGYDPYAAEG     E   +++EQAQGLMALAKLSN+   + RGACKKCG +GHLTFQCRN +
Sbjct:    1 MPASAGRVRMPHNNRMHSSAALKMTGIWTNTIGYDPYAAEGE-EKKEVSQSSYEQAQGLMALAKLSNKS-NDVRGACKKCGMLGHLTFQCRNFL 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1386.3015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC93_ECTSI5.140e-66100.00CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YWX5_9STRA3.620e-4585.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4C9D1_PYTIN2.090e-3671.43Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2P4YHG3_9STRA1.850e-3472.34Zinc ion binding protein n=1 Tax=Phytophthora palm... [more]
A0A6A3SK00_9STRA4.100e-3373.40Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A329RX20_9STRA4.710e-3372.34Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A833TGJ4_PHYIN4.760e-3363.96Zinc knuckle n=1 Tax=Phytophthora infestans TaxID=... [more]
A0A0W8C9S2_PHYNI5.690e-3372.34CAX-interacting protein 4 n=17 Tax=Phytophthora Ta... [more]
A0A3M6VM93_9STRA9.230e-3371.28CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A8K1FHX2_PYTOL2.430e-3272.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1386contigEcto-sp13_S_contig1386:537..6041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score229.2
Seed ortholog evalue2.4e-57
Seed eggNOG ortholog2880.D8LC93
Preferred nameSREK1IP1
Model size1962
KEGG koko:K11493
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons7
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG2985@1,KOG2985@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_005630.1
Cds size822
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1386.3015.1prot_Ecto-sp13_S_contig1386.3015.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1386 573..4937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.039696-UTR-Ecto-sp13_S_contig1386:536..5721681462739.039696-UTR-Ecto-sp13_S_contig1386:536..572Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1386 537..572 +
1681462739.1330788-UTR-Ecto-sp13_S_contig1386:4937..60411681462739.1330788-UTR-Ecto-sp13_S_contig1386:4937..6041Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1386 4938..6041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.0515027-CDS-Ecto-sp13_S_contig1386:572..7791681462739.0515027-CDS-Ecto-sp13_S_contig1386:572..779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 573..779 +
1681462739.0611038-CDS-Ecto-sp13_S_contig1386:1557..15871681462739.0611038-CDS-Ecto-sp13_S_contig1386:1557..1587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 1558..1587 +
1681462739.0710967-CDS-Ecto-sp13_S_contig1386:2027..21021681462739.0710967-CDS-Ecto-sp13_S_contig1386:2027..2102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 2028..2102 +
1681462739.0808504-CDS-Ecto-sp13_S_contig1386:2867..29451681462739.0808504-CDS-Ecto-sp13_S_contig1386:2867..2945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 2868..2945 +
1681462739.0909626-CDS-Ecto-sp13_S_contig1386:3432..36651681462739.0909626-CDS-Ecto-sp13_S_contig1386:3432..3665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 3433..3665 +
1681462739.1119685-CDS-Ecto-sp13_S_contig1386:4417..45221681462739.1119685-CDS-Ecto-sp13_S_contig1386:4417..4522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 4418..4522 +
1681462739.1234324-CDS-Ecto-sp13_S_contig1386:4843..49371681462739.1234324-CDS-Ecto-sp13_S_contig1386:4843..4937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 4844..4937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1386.3015.1

>prot_Ecto-sp13_S_contig1386.3015.1 ID=prot_Ecto-sp13_S_contig1386.3015.1|Name=mRNA_Ecto-sp13_S_contig1386.3015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEA
NAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDAG
APMQAVAEESDSDSDDISSCSSVSDSSDEEDSRRRKRGSGIGATSKGSKG
KEKKSSRASSSSHKDRDRGRDRDGGGGKRKRRREADSSDDEGSNDSDSGS
DVRRKGSGSSKKRRARSGDDFSKDKGKPERRERKEKRRKDREREKSRKSS
SKKSKKDKREKKSKHSKHISRKK*
back to top

mRNA from alignment at Ecto-sp13_S_contig1386:537..6041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1386.3015.1 ID=mRNA_Ecto-sp13_S_contig1386.3015.1|Name=mRNA_Ecto-sp13_S_contig1386.3015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1386:537..6041+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGTGAGCGTTTGACCAGGGGGAACACTCGCCACCATGCCGGCTACCGC
GGGGAGAGTGCGCATGCCGCACGGCAATCGCGTCAGCAGTAGCTCTGCCC
TCAAGATGACGGGTATCTGGACCAACACCATTGGGTATGACCCGTACGCC
GCCGAGGGCGGGGGAGCCGATGCCGAGGACGAAGCCAACGCGTTCGAGCA
GGCGCAGGGGCTGATGGCGCTGGCGAAGCTTTCGAACCAGGGGGTAAGTG
GTGGGAGAGTTCTACCTGTGGGCAATGCGTGTGTTGCCTAATTCATTGAT
CATTTTTGCTTCCGCGAAAGTAGCTGTTGAGGTGCCGCCAAAGTAGGTCT
GGGTTTGCCGCAACCAGGGTGGTACCCTACGTCATATCATAACGGGCCTC
CGAGCCGAGACCCTGCTTTGTTTCATCCCATGTCCACGGCGTAGACTACA
CTTCCGTTGCTCCCAGTTTTAACTCCCTGCGGCCTTGCCTCTTTTAGCTG
AACAGGAGTGCGGCCCGAAATCAAACGTTAACTTCCTTGACCAAGCCTGA
GCCTCCACAATGAGCTGTACGGCCTGCAGGTCTCCCTTCGCCGACTATCC
AATGGCTTGCTGGTTGCGCGCATCTTTGATGTCGAGTGGTAGCAGTTACT
GTTGTTGTTGTCGTTGCTCATGTACAAACCCAAGAAATTTACCCAGATAC
CGTACATACGTACACTTGAGGCTTGGAGCGATCCTACATCGAATATCGGG
GTAGCTCCCAGCTGGACACGAGCCTCTTCTTGGATCAGTGATACCTGTTT
GGCTTTTCACATGGGTCGGCCAGCCACCTCACAAGCACGTAGGATACGAC
GCCCAACAAACCGCAATTTTTTCCGTCGCGGCCGCGCGCCATACGGGGTA
CCCGACTTTCGGGTCGGGACTTCGTTCGTGGCAAATCGTGTTTTCCTTCA
ATCGATAACGTTGCTTCCTCCGCCCCCCGCTGCGCTCCGCGAATCGTGAA
CGACGTATGTACTGCGCGCAGGTCACGGAGCAGCGAGGAGCTTGCAAAAA
GGTAGGTGGGCGGCTCATTGATGTTGAGCGTGGCTTGTTTGATTGATTAG
CAATTTCATGGTGAGCGTGGCTCGTCTGATTGAATAGCAATTGGACGCAG
CAGCTGCTTGGGGCCACCACTTTTTCTTGTAGCCCATGATGAGAGAAACA
TGTCTGTACCCTCTGCTGGCTGCTGGCCGTGTTTCTCTAGGGGGGCTGTA
CTCCGACACCAGCTGAGGAAATGCTCTCTCTTAATGACGTTGTGATGTTT
GGGTTGTCGACAGTGACAGTGGGCAACGTCGACTGACCCACAGACTGCGC
TGCTCAGAGGTCCCCCCCCCCCCCCTCGTTGACCCCCTCTTCTCTCCCCA
CCCCTTCCTGTCTCGTTCTTTCTTCCCCCCTCCCTGTCTTGAATTGGTTG
TTTCGAACACATAAACCGTGTTGACTTTCATGTCACTGTAGTGCGGATCG
GTGGGCCACCTGACCTTCCAATGCCGGAACCACATCCAGCCTGTCGACGC
AGGCGCGCCCATGCAGGTACGTACGGCAGCAGTGGCCCGGGGTTGATGGC
GTAAGCTTGGGGTGAGAGGATATCAACACGGTCTAGACAGGGGTCCTCTT
GTGGTTGAGAAAAGTTGGATCGGCCTAGGAGAGGAAAGCTTCTCTAGTTG
AGAACGGTGCAATCGACGGAGTGATAAGGGGAACCTTATGCGGTGCGGGA
AGGTGTTTCGGCTCAACTCCTGTTTGTGAGCAAGGCTTGATCGGATGGTT
TCATCTCCTTTTGAGAAATGGTGCTACTGAAGCGTAGAGATGACGACCTC
TGACAACGATGGTGTAGTTGACACCGGTCCCACGACTTGTCGCGGGTCTC
CAAGTTGGGCAAGTCGCGTGAACTATTGCCGCTGAACTGCTCTTATGGGC
AACAAACAAGAGGCCGTAGTTGACCTCGGTAAAGACTTAGTTGTCCCTGT
CGACACCATCGACACCGAGAAGATCGTCCTCTAGAGGAGAGACGATAGAT
AGCAGCAGAAATAACGAATATCTTCCTCTCTGCGTTTGTTGCGTGTACAA
GTACCTCGCTTGGCCGATCCGGCCGTACCCCTCGGTGTCTATTTCACACA
AACCCTCTCGGTTCTCGGTGGCCGTCTCTCCTTAATGATGACCGCCTGCC
CCTTTGCCTCCCCCCAACGCCTAACCTTCAACCACCTCGTGCAGAACTGC
TTACACCCAATGCCCTTGGTTGTTTTTGTCTTGTCGCGTCGTTCCTCTTC
GTTTCCCTATTTCTGGTTGTGCGCCCGCCAGGCGGTGGCGGAGGAGTCTG
ATTCCGACTCGGACGACATCAGCTCTTGCTCTTCGGTGTCCGACAGCAGT
GACGAGGAGGTAATGCTGCATGCTACATGTATATACCCATCGAAGGGACC
CCCCGCCGTATGAAACTAAACGCAGCACGGCGATGCGATTCGCGCTTTGC
CTTAAAACCAAAATCAGGCGGGTCGGTGAAGCTCCGACGTTCTCCGCCCG
ACCTAGCTTTGCAGGGATACTTGGGTCTAGGGTATGGACGCTAGTATCAT
GCATGACTGCGAGTCCCGCCCTTCCTCCCGCCCAGACGAGTAGAAGTTGA
AGCATGATGTGCATTGGTGCAGTGGTTGTGCAAGTCCTCAATCGGTGCTC
AGATAGGTGATTGATTCTGTTGTGTGGAGATGCTGGGTTTCTGTCGTGAT
GCTTGTAGCATGTAGGCTGTACACGCACGATGCTGGCGGGGTCAAATCTT
AGCTCACCACGTGTTAGTCGCGCATCGTAGCTACTGCAGCTTACGGCCCC
TGTCGTTTGTATGGTTCTCGTGTTTTGTACATGGTATGCCCAACAGGACT
CGCGGCGACGCAAGCGTGGCAGCGGGATCGGCGCAACCAGCAAGGGCAGC
AAGGGTAAAGAGAAGAAGAGCAGCCGGGCCTCGTCTTCCTCCCACAAGGA
TAGGGACAGGGGCAGGGACAGGGACGGGGGAGGGGGCAAGAGAAAAAGGC
GGAGGGAGGCGGATAGCAGCGATGACGAGGGGAGCAACGACAGCGACAGC
GGCAGCGACGTCCGTCGCAAGGGTTCGGGGTGAGTCTTTGATTTGTTTCT
GCCTTGGGTTCTATTGAGGGGTGGCGGGACGTTTTGATTGACGCGGACCG
GCTTAAAGAATGAAGCTTTTGCTCTCTCGAGAACAACTTGTTTGAATGGT
GGCCTACTCCACTGTTGTTTGGTAGACATTGGGGAGGCGATGGTTGGTGC
ATCAAGTCTGTAATCTTGACTTGAGCGTGCTCCGAGTTTAATGCAACAGT
GTTGATTCCTACAACCCATTGCCTGTGAACCAATTAGTGGAAATGGTAGT
TTTCCCTTAAGCAGTGCTGGGTTTATAGGATTTTCCCGACGAGGTTGCCA
ACATGTCAGGCCTCCAAGATAAATGAACATCTCGGTAGGGTGCGGGTGTC
CTAGTCTACCGTCCCTCAAGCTTCTTCCTCTGGAATGCGTGAAATTTCGC
AACAAGTGCTCACACGGCACGTACCCTTGTCCAGCCCTCCGGTGATGCGT
TTGAGACGTTCGAATATGTTGGTCACAACATAACATCTTCCTCTTGTCTA
GCCTACAGTTCCAAAACGAGAGTACCGCGATGGCCTCGATGCTACTTGTT
TTTAATGCATGATACCCACATATGGTATTCATGCGGCTTGGTGTCGTGCC
ATTGTGTTGGCAAGCTATGAAAATGACGGTACGTTCCGCCGCGTTGTATT
TGTAACGGTTTCAAGAGGCGTAGGATGGCTCATCTTCTCGTTGCTCTGCT
GTTTCCCAATACTCGATCTTGTTTCCTCAAGGTCAAGCAAGAAGCGGCGA
GCGCGCAGTGGCGACGATTTTTCCAAGGATAAGGGCAAGCCGGAGCGGCG
AGAGCGAAAGGAAAAGAGGCGGAAGGACCGGGAGAGGTCAGTTGTCATTT
TGGGGTTTATTCATTGCCTCATCCCTAGTTTGGTTGTTGCTGGCCTCGTT
TCAGGCTAGTACCTCCCAGATGGATGAGAAACACCAAGGGACTGGATTGA
GGCCACCCTAGTTTTTAAAGGGGAGCTTGCAGCGTCGACGAAAACAACAG
CACATCGCAAAGCGTGTATCATTTTATTGTACGATTTCGCCCTTGTGACA
CTGCAATGTTTTTTTCTGCCCTCATGCATGTCCATCTCGTGTGTCGTTGC
AATGTTTTGACGCAGTGCCTCGTTTTGTATGTGTTGTTGCTGCTGTGATG
ATCTCAGGGAAAAATCGCGCAAGTCGTCCTCGAAAAAGTCCAAGAAAGAC
AAGCGAGAAAAGAAGAGCAAGCACAGCAAGCACATCAGCCGGAAGAAGTG
ATTCGTCTATTTTTGTCTTTGTATGTACGAAGCCCGTTCTGAGCGAGTAT
ACGCAGCCAAGGCTGGCTGGCACCCCAGAAGGGTGAAGCACCGCAATCGT
GGGGTGGGAGAGGTGGCCGTTTGAGTGCTGTGTCGCAGCCGATGACGCGA
AGAGTGGGCGTGTTTGTGTGAGCTTGCGAAGGGACGACTTTACGATAGGA
GATGTTTGGGCGAGGGTAGCAGCTCGAACCGACCCCCCAAAGCCTCGACG
ATTTGTATGGGGGAAATGCTGACGCGAAGGCATGGTTGGTAAGAAACAGA
GGAAGGGAGAGGGGCAAGAGGCAATCAAGCTGTCGTACGTTACGTGCTGT
TCGGCTCTGTTTTGGTCTCTTTGTGCTTCGCTCTGGGAATGTTCGCGGGG
ATGTGTGGGCTAGTCTCTCAAGCTATCCTCCTGAGCCTGAGTAGAACATG
TATCGATTGAAGATTCTGTTTCTGTTGTGGAGCAATTCGTCGTTGGGAAC
GATGTGCAGGTCACACTGCTGTAAGAACGAGCGCCCACCTTGCGGCATTA
AAACACGAGTGATCCACCCTCTGTTATCGCTTGTGGTGCAGACAAGCAAG
CGTTCCTGCCTGAAGCTAGCTTCTTTTGAAGCTGGTGTGGATGACAAGGG
GAGAGTATTGTCGCAAGCACGTTACCGTAGCTGATACGCAAATGAAAGCA
AGTGCCCACACCTCACAGGGTCTTGCAATTTGAACTCATAGTAGTGCTTT
CACAGTTACATTTGCGAGGACGGCCTCTCGCCCGTCTGATGAAGTTGTGT
GAACAGGTGCATTGTTGCCTTATTAAGTTTTGTATGTGCAATACATTTTC
TCGAGTTCTTCCTTTGCCGTAGTCACATCCGGTGATTTCCAGGACAGGCT
ACAAGTTGTTAACGGGAATGAGACTGGGATCTGAAAGGTAGTTCGAAGGA
AAGATGCAGAGTAGGAGGCTGTGGCGGAAGTTGCAATTCCCTGGGACAGA
AATACAGACGTATCAGGAGAAGGGTCTTCAATTGCCCCGCGCCACTGGAG
GAACCACTCCCTTTCTTCAGTCTAGCAATCCCTTGTGTTCATTCTACCAA
AGAGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1386:537..6041+

>mRNA_Ecto-sp13_S_contig1386.3015.1 ID=mRNA_Ecto-sp13_S_contig1386.3015.1|Name=mRNA_Ecto-sp13_S_contig1386.3015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1386:537..6041+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCTACCGCGGGGAGAGTGCGCATGCCGCACGGCAATCGCGTCAG
CAGTAGCTCTGCCCTCAAGATGACGGGTATCTGGACCAACACCATTGGGT
ATGACCCGTACGCCGCCGAGGGCGGGGGAGCCGATGCCGAGGACGAAGCC
AACGCGTTCGAGCAGGCGCAGGGGCTGATGGCGCTGGCGAAGCTTTCGAA
CCAGGGGGTCACGGAGCAGCGAGGAGCTTGCAAAAAGTGCGGATCGGTGG
GCCACCTGACCTTCCAATGCCGGAACCACATCCAGCCTGTCGACGCAGGC
GCGCCCATGCAGGCGGTGGCGGAGGAGTCTGATTCCGACTCGGACGACAT
CAGCTCTTGCTCTTCGGTGTCCGACAGCAGTGACGAGGAGGACTCGCGGC
GACGCAAGCGTGGCAGCGGGATCGGCGCAACCAGCAAGGGCAGCAAGGGT
AAAGAGAAGAAGAGCAGCCGGGCCTCGTCTTCCTCCCACAAGGATAGGGA
CAGGGGCAGGGACAGGGACGGGGGAGGGGGCAAGAGAAAAAGGCGGAGGG
AGGCGGATAGCAGCGATGACGAGGGGAGCAACGACAGCGACAGCGGCAGC
GACGTCCGTCGCAAGGGTTCGGGGTCAAGCAAGAAGCGGCGAGCGCGCAG
TGGCGACGATTTTTCCAAGGATAAGGGCAAGCCGGAGCGGCGAGAGCGAA
AGGAAAAGAGGCGGAAGGACCGGGAGAGGGAAAAATCGCGCAAGTCGTCC
TCGAAAAAGTCCAAGAAAGACAAGCGAGAAAAGAAGAGCAAGCACAGCAA
GCACATCAGCCGGAAGAAGTGA
back to top