mRNA_Ecto-sp13_S_contig13859.3014.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13859.3014.1 vs. uniprot
Match: D7FRQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ7_ECTSI) HSP 1 Score: 900 bits (2325), Expect = 0.000e+0 Identity = 471/536 (87.87%), Postives = 483/536 (90.11%), Query Frame = 1
Query: 1 SGAHKSKVKCRVGKRGRRCVRAHPDYGAIILKDDVGVFIGANHESAHLLARYCTGRATSGAAATATPSKASGRSLRREGWVEDAFLVPENPPAGKRPHGTQENRQNTASSGDCRFERTTWFDTDDAGGGASTPSAFPLGESLVGTPPGAVLVIAQSLSFALGVVLSLCEAGADLVVEGSPAVSVVCSPAWWDPVADERAERELAARFPCVRLVKRETECECLLEVGADKADLVCVLSSRPEGEPTTPKTGGGGSDGDVLGDRSRRGQGSDVWAMGVVVDVLGLVPESTRVVVRFDDSARAEQHQVISAHVRRREDERETGRRERVAAESGEEQGEENSFDGRKEETDNASQQHHDA------GMTVEDSVDFGYSARAGVGGVGVYFDDTRGVVREGFDDFFGTMSGYVSGDVVIGDAAELLLLQTMLAPDIQSLMSDVMHLVSRVPIEVLWPEHSPNARGTVVGDNNDSRGDGDTR-SRIRPVTYGEAFRLLLEDRDLLALGLHRPPTHGRGPRKRGGRERWHCPGRSRYVAINS 1587
SG HKS+VKC GKR RRCVR HPDYG II KDDVGVFI ANHESA LLARYCTGRATSGAAATA PSKASG SLRREGWVE+AFLV ENPP G R HGTQENRQ ASSGD RFERT W D DAGGGASTPS FPLGESLVGTPPGAVLVIAQSLSFALGVVLSLCEA DL VEGSPA+SVVCSP WWDPVADERAERELAARFPCVRLVKRETE ECLLEVGADKADLVCV+SSRPE EPTTPKTGGGG DGDVLGD S RGQGSDVWAMGVVVDVLGLVPESTRVVVRFDDSA AEQHQVISAHVRRRED +ETGRRER AAESGE+QGEEN FDGRKE+TD A+QQ DA G TVEDSVDFGYSAR+GVGG GVYFDDTRGVVREGFDDFFGTMSGYVSGDVV+G+AAELLLLQTMLAPDIQSLMSDVMHLVSRVPIEVLWPEHSPNARGT VGDNND+RGDGD R SRIRPVTYGEAFRLLLEDRDLLALGLHRPPTHGRGPRK GGRERW CPG SRYVAINS
Sbjct: 551 SGGHKSRVKCGAGKRRRRCVRVHPDYGTIISKDDVGVFISANHESADLLARYCTGRATSGAAATAAPSKASGTSLRREGWVENAFLVAENPPVGNRQHGTQENRQRNASSGDGRFERTIWSDVHDAGGGASTPSVFPLGESLVGTPPGAVLVIAQSLSFALGVVLSLCEADDDLDVEGSPALSVVCSPTWWDPVADERAERELAARFPCVRLVKRETEYECLLEVGADKADLVCVVSSRPEDEPTTPKTGGGGGDGDVLGDHSGRGQGSDVWAMGVVVDVLGLVPESTRVVVRFDDSASAEQHQVISAHVRRREDAQETGRRERAAAESGEKQGEENLFDGRKEQTDRATQQQRDAPRNENAGTTVEDSVDFGYSARSGVGGGGVYFDDTRGVVREGFDDFFGTMSGYVSGDVVVGNAAELLLLQTMLAPDIQSLMSDVMHLVSRVPIEVLWPEHSPNARGTAVGDNNDNRGDGDIRRSRIRPVTYGEAFRLLLEDRDLLALGLHRPPTHGRGPRKMGGRERWRCPGGSRYVAINS 1086
BLAST of mRNA_Ecto-sp13_S_contig13859.3014.1 vs. uniprot
Match: A0A6H5L8C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8C5_9PHAE) HSP 1 Score: 869 bits (2245), Expect = 2.200e-311 Identity = 459/535 (85.79%), Postives = 472/535 (88.22%), Query Frame = 1
Query: 1 SGAHKSKVKCRVGKRGRRCVRAHPDYGAIILKDDVGVFIGANHESAHLLARYCTGRATSGAAATATPSKASGRSLRREGWVEDAFLVPENPPAGKRPHGTQENRQNTASSGDCRFERTTWFDTDDAGGGASTPSAFPLGESLVGTPPGAVLVIAQSLSFALGVVLSLCEAGADLVVEGSPAVSVVCSPAWWDPVADERAERELAARFPCVRLVKRETECECLLEVGADKADLVCVLSSRPEGEPTTPKTGGGGS-----DGDVLGDRSRRGQGSDVWAMGVVVDVLGLVPESTRVVVRFDDSARAEQHQVISAHVRRREDERETGRRERVAAESGEEQGEENSFDGRKEETDNASQQHHDAGMTVEDSVDFGYSARAGVGGVGVYFDDTRGVVREGFDDFFGTMSGYVSGDVVIGDAAELLLLQTMLAPDIQSLMSDVMHLVSRVPIEVLWPEHSPNARGTVVGDNNDSRGDGDTR-SRIRPVTYGEAFRLLLEDRDLLALGLHRPPTHGRGPRKRGGRERWHCPGRSRYVAINS 1587
SG H +VKC KRGR CVR HPDYGAII KDDVGVFI ANHESA LLARYCTGRATSGA AT PSKASGRSLRREGWV++AFLV ENPPAGKR HGTQENR+ TA S D FERT W D DA G A TPS FPLGESLVGTPPGAVLV+AQSLSFALGVVLSLCEAGADL +EGSPA+SVVCSP WWDPVADERAERELAARFP VRLVKRETECECLLEVGADKA L+CV+SSRPE +PTT KTGG DGDVLGD S RGQGSDVWAMGVVVDVLG V ESTRVVVRFDDSA AEQHQVISAHVRRRE ERETGRRER A ESGEEQGE+NSFDGRKE+TD+ SQQHHDAGMTVEDSVDFGYSARAGVGG GVYFDDTRGVVREGFDDFFGTMSGYVSGDVVIGDAAELLLLQTMLAPDIQ LMSDVMHLVSRVPIEVLWPEHSP AR TVVGDNNDSRGDGD R S IRPVTYGEAFRLLLEDRDLLALGLHRPPTHGRGPRK G RERW CPG SRYVAINS
Sbjct: 102 SGGHMRRVKCGASKRGRCCVRVHPDYGAIISKDDVGVFISANHESADLLARYCTGRATSGAVATTAPSKASGRSLRREGWVKNAFLVAENPPAGKRQHGTQENRRRTALSSDGPFERTIWSDAHDARGDAFTPSIFPLGESLVGTPPGAVLVVAQSLSFALGVVLSLCEAGADLDIEGSPALSVVCSPTWWDPVADERAERELAARFPWVRLVKRETECECLLEVGADKAGLICVVSSRPEDKPTTQKTGGXXXXXXXXDGDVLGDHSGRGQGSDVWAMGVVVDVLGSVSESTRVVVRFDDSASAEQHQVISAHVRRREHERETGRRERAATESGEEQGEDNSFDGRKEQTDDPSQQHHDAGMTVEDSVDFGYSARAGVGGGGVYFDDTRGVVREGFDDFFGTMSGYVSGDVVIGDAAELLLLQTMLAPDIQLLMSDVMHLVSRVPIEVLWPEHSPKARETVVGDNNDSRGDGDIRRSWIRPVTYGEAFRLLLEDRDLLALGLHRPPTHGRGPRKTGRRERWRCPGGSRYVAINS 636 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13859.3014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13859.3014.1 >prot_Ecto-sp13_S_contig13859.3014.1 ID=prot_Ecto-sp13_S_contig13859.3014.1|Name=mRNA_Ecto-sp13_S_contig13859.3014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=601bp SGAHKSKVKCRVGKRGRRCVRAHPDYGAIILKDDVGVFIGANHESAHLLAback to top mRNA from alignment at Ecto-sp13_S_contig13859:188..3105+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13859.3014.1 ID=mRNA_Ecto-sp13_S_contig13859.3014.1|Name=mRNA_Ecto-sp13_S_contig13859.3014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13859:188..3105+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13859:188..3105+ >mRNA_Ecto-sp13_S_contig13859.3014.1 ID=mRNA_Ecto-sp13_S_contig13859.3014.1|Name=mRNA_Ecto-sp13_S_contig13859.3014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1803bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13859:188..3105+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |