mRNA_Ecto-sp13_S_contig10299.301.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10299.301.1
Unique NamemRNA_Ecto-sp13_S_contig10299.301.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10299.301.1 vs. uniprot
Match: D8LRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF6_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.790e-71
Identity = 149/192 (77.60%), Postives = 151/192 (78.65%), Query Frame = 3 
Query:   36 PRPRGSQVFMLSSAGQDKKAHVAFAGTSNNVHPSVDTGTGGIGXXXXXXXXXXXXXXXXGIGEIGLRSSPGSHSPIHPRRDAGGGSSGYPGLVPAEAESAPPGVVEMEPAPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAPGPWMS 611
            PRPRGSQVFMLSSAGQDKKAHVAFAGTS+NVHP VDTGTGGIG                GIGE+GLRSS GSHSPIHPRRD GGGS GYPGLVPAEAESAPPGVVEMEPAPPL    XXXXXXXXXX       XX    X    XXXXXX RRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGA GPWMS
Sbjct:  387 PRPRGSQVFMLSSAGQDKKAHVAFAGTSSNVHPPVDTGTGGIGGAAPSFPVYRGTAGSSGIGEMGLRSSSGSHSPIHPRRDGGGGS-GYPGLVPAEAESAPPGVVEMEPAPPLPVAGXXXXXXXXXXVRKKRAKXXSSKSXRDGGXXXXXXXRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAAGPWMS 577
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BLAST of mRNA_Ecto-sp13_S_contig10299.301.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 2.220e-71
Identity = 169/192 (88.02%), Postives = 171/192 (89.06%), Query Frame = 3 
Query:   36 PRPRGSQVFMLSSAGQDKKAHVAFAGTSNNVHPSVDTGTGGIGXXXXXXXXXXXXXXXXGIGEIGLRSSPGSHSPIHPRRDAGGGSSGYPGLVPAEAESAPPGVVEMEPAPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAPGPWMS 611
            PRPRGSQVFMLSSAGQDKKAHVAFAGTS+NVHPSVDTGTGGIG                GIGE+GLRSS GSHSPIHPRRDAGGGSSGY GLVPAEAESAPPGVVEMEPA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAPGPWMS
Sbjct:  537 PRPRGSQVFMLSSAGQDKKAHVAFAGTSSNVHPSVDTGTGGIGGAAPSFPAYRGMAGSSGIGEMGLRSSSGSHSPIHPRRDAGGGSSGYSGLVPAEAESAPPGVVEMEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRLGGGDGGMRPAVPDAGPEMDEMRPSPGDGTGAPGPWMS 728
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10299.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRF6_ECTSI1.790e-7177.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU27_9PHAE2.220e-7188.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10299contigEcto-sp13_S_contig10299:2998..3657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score220.7
Seed ortholog evalue5.6e-55
Seed eggNOG ortholog2880.D8LRF6
Model size660
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2D43J@1,2STRI@2759
Cds size552
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462521.3324897-UTR-Ecto-sp13_S_contig10299:2997..30591681462521.3324897-UTR-Ecto-sp13_S_contig10299:2997..3059Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10299 2998..3059 +
1681462521.3530107-UTR-Ecto-sp13_S_contig10299:3611..36571681462521.3530107-UTR-Ecto-sp13_S_contig10299:3611..3657Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10299 3612..3657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462521.3447826-CDS-Ecto-sp13_S_contig10299:3059..36111681462521.3447826-CDS-Ecto-sp13_S_contig10299:3059..3611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10299 3060..3611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10299.301.1prot_Ecto-sp13_S_contig10299.301.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10299 3060..3611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10299.301.1

>prot_Ecto-sp13_S_contig10299.301.1 ID=prot_Ecto-sp13_S_contig10299.301.1|Name=mRNA_Ecto-sp13_S_contig10299.301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
MLSSAGQDKKAHVAFAGTSNNVHPSVDTGTGGIGGAAPSFPAYRGTAGSS
GIGEIGLRSSPGSHSPIHPRRDAGGGSSGYPGLVPAEAESAPPGVVEMEP
APPLPVAGGDGGGGEGDGARKKRAKKRSSKSRRDRGRGRSSSSRRLGGGD
GGMRPAVPDAGPEMDEMRPSPGDGTGAPGPWMS*
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mRNA from alignment at Ecto-sp13_S_contig10299:2998..3657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10299.301.1 ID=mRNA_Ecto-sp13_S_contig10299.301.1|Name=mRNA_Ecto-sp13_S_contig10299.301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10299:2998..3657+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTCGCCGCCGCCGGGGCCGCCGGGGGGGGAGGCCCCCGACCCCGCGGG
TCCCAAGTGTTCATGCTCTCGTCTGCGGGCCAGGACAAGAAGGCGCACGT
GGCGTTCGCGGGCACGAGCAACAACGTCCACCCCTCCGTCGACACCGGAA
CCGGCGGAATCGGCGGTGCCGCTCCGTCTTTCCCGGCGTACCGTGGGACG
GCCGGGAGCAGCGGCATCGGCGAGATTGGCTTGCGGTCGTCACCGGGGTC
CCACTCTCCCATCCACCCCAGGAGAGACGCCGGCGGCGGCAGCAGCGGTT
ACCCCGGCTTGGTACCGGCGGAAGCGGAGAGCGCTCCGCCGGGGGTAGTG
GAGATGGAGCCCGCGCCGCCGCTGCCCGTAGCGGGAGGAGATGGTGGAGG
CGGTGAGGGAGACGGCGCCCGTAAGAAGAGGGCCAAGAAGAGGTCGTCCA
AGTCGCGGAGGGACAGGGGAAGGGGAAGGTCGTCGTCATCTAGGAGGCTG
GGTGGCGGTGACGGAGGCATGCGTCCGGCGGTGCCGGATGCCGGGCCGGA
GATGGACGAGATGAGGCCTTCGCCGGGCGATGGCACCGGCGCTCCGGGCC
CTTGGATGTCTTGAAGGGGGCACGGGATTGTCTTGTCCCGGTCCTTGGGT
GTCTTAACTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10299:2998..3657+

>mRNA_Ecto-sp13_S_contig10299.301.1 ID=mRNA_Ecto-sp13_S_contig10299.301.1|Name=mRNA_Ecto-sp13_S_contig10299.301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10299:2998..3657+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTCGTCTGCGGGCCAGGACAAGAAGGCGCACGTGGCGTTCGCGGG
CACGAGCAACAACGTCCACCCCTCCGTCGACACCGGAACCGGCGGAATCG
GCGGTGCCGCTCCGTCTTTCCCGGCGTACCGTGGGACGGCCGGGAGCAGC
GGCATCGGCGAGATTGGCTTGCGGTCGTCACCGGGGTCCCACTCTCCCAT
CCACCCCAGGAGAGACGCCGGCGGCGGCAGCAGCGGTTACCCCGGCTTGG
TACCGGCGGAAGCGGAGAGCGCTCCGCCGGGGGTAGTGGAGATGGAGCCC
GCGCCGCCGCTGCCCGTAGCGGGAGGAGATGGTGGAGGCGGTGAGGGAGA
CGGCGCCCGTAAGAAGAGGGCCAAGAAGAGGTCGTCCAAGTCGCGGAGGG
ACAGGGGAAGGGGAAGGTCGTCGTCATCTAGGAGGCTGGGTGGCGGTGAC
GGAGGCATGCGTCCGGCGGTGCCGGATGCCGGGCCGGAGATGGACGAGAT
GAGGCCTTCGCCGGGCGATGGCACCGGCGCTCCGGGCCCTTGGATGTCTT
GA
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