mRNA_Ecto-sp13_S_contig1385.3010.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1385.3010.1
Unique NamemRNA_Ecto-sp13_S_contig1385.3010.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: D7G005_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G005_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 8.470e-19
Identity = 46/52 (88.46%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:  397 GDLAEVHDMSSEAPKNDASRTSSFLSARSFFEEGQGQPQASSGVGPGSNLPA 552
            GDLAE  DMSSEAPKNDASRTSSFL ARS FEEGQGQPQ SSGVG GSNLPA
Sbjct:    6 GDLAEDRDMSSEAPKNDASRTSSFLVARSVFEEGQGQPQVSSGVGGGSNLPA 57
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BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: A0A6H5KLU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.220e-11
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  421 MSSEAPKNDASRTSSFLSARSFFEEGQGQPQASSGVGPGSNLPA 552
            MS EA KN  SRTSSFL+ARSFFEEGQGQPQASSGVG GSNLPA
Sbjct:    1 MSPEARKNGVSRTSSFLAARSFFEEGQGQPQASSGVGAGSNLPA 44
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BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: A0A6H5JNG4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNG4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.820e-10
Identity = 38/74 (51.35%), Postives = 44/74 (59.46%), Query Frame = -2 
Query:    9 PPDLREEAAGQRYVQTTDFRYLCGPANEGGDLTREINYRKEQRGSASEDTPGSYSPDRENPCHPRCAFWRRKPW 230
            PP L  EAAGQ+Y QTT+FRYL G  NE GDLTREINYR+ +   A     G    DR+     R A  RR+ W
Sbjct:  170 PPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRRSRAARACLRRNGR---DRKRHSDSRSACSRRRRW 240
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BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: A0A6H5KCH9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.270e-10
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = -2 
Query:  114 GDPPDLREEAAGQRYVQTTDFRYLCGPANEGGDLTREINYR 236
            G PP L  EAAGQ+YVQTT FRYL G ANE GDLTREINYR
Sbjct:  355 GPPPPLTIEAAGQKYVQTTAFRYLGGLANEHGDLTREINYR 395
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BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: A0A6H5K6C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-9
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = -2 
Query:  114 RVRVVGVKEKDGDPPDLREEAAGQRYVQTTDFRYLCGPANEGGDLTREINYR 269
            R +      +   PP L  EAAGQRY QTT+FRYL G  NE GDLTREINYR
Sbjct:  119 RAKDKPTTSQPASPPPLTIEAAGQRYAQTTEFRYLGGLVNEHGDLTREINYR 170
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BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: A0A6H5KEZ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ9_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.320e-9
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = -2 
Query:  114 PPDLREEAAGQRYVQTTDFRYLCGPANEGGDLTREINYR 230
            PP L  EAAGQ+Y QTT+FRYL G  NE GDLTREINYR
Sbjct:   60 PPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYR 98
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BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: A0A6H5L2C5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.860e-9
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = -2 
Query:  114 PPDLREEAAGQRYVQTTDFRYLCGPANEGGDLTREINYR 230
            PP L  EAAGQ+Y QTT+FRYL G  NE GDLTREINYR
Sbjct:   60 PPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYR 98
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BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: A0A6H5K767_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K767_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.440e-9
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = -2 
Query:  114 GDPPDLREEAAGQRYVQTTDFRYLCGPANEGGDLTREINYR 236
            G PP L  EAAGQ+Y QTT+ RYL GP NE GDLT+EINYR
Sbjct:  435 GPPPPLTIEAAGQKYAQTTEIRYLGGPVNEHGDLTQEINYR 475
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BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: A0A6H5KVC3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.890e-9
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = -2 
Query:  114 PPDLREEAAGQRYVQTTDFRYLCGPANEGGDLTREINYR 230
            PP L  EAAGQ+Y QTT+FRYL G  NE GDLTREINYR
Sbjct:  132 PPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYR 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Match: A0A6H5K038_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K038_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.950e-9
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = -2 
Query:  114 PPDLREEAAGQRYVQTTDFRYLCGPANEGGDLTREINYR 230
            PP L  EAAGQ+Y QTT+FRYL G  NE GDLTREINYR
Sbjct:   60 PPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYR 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1385.3010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G005_ECTSI8.470e-1988.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLU0_9PHAE1.220e-1186.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNG4_9PHAE3.820e-1051.35Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KCH9_9PHAE9.270e-1078.05Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K6C6_9PHAE1.010e-959.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ9_9PHAE1.320e-974.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L2C5_9PHAE1.860e-974.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K767_9PHAE3.440e-970.73Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KVC3_9PHAE3.890e-974.36Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K038_9PHAE3.950e-974.36Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1385contigEcto-sp13_S_contig1385:9958..10895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size552
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.7162867-CDS-Ecto-sp13_S_contig1385:9957..100891681462738.7162867-CDS-Ecto-sp13_S_contig1385:9957..10089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1385 9958..10089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.7245202-UTR-Ecto-sp13_S_contig1385:10089..101131681462738.7245202-UTR-Ecto-sp13_S_contig1385:10089..10113Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1385 10090..10113 -
1681462738.7323842-UTR-Ecto-sp13_S_contig1385:10499..108951681462738.7323842-UTR-Ecto-sp13_S_contig1385:10499..10895Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1385 10500..10895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1385.3010.1prot_Ecto-sp13_S_contig1385.3010.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1385 9958..10089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1385.3010.1

>prot_Ecto-sp13_S_contig1385.3010.1 ID=prot_Ecto-sp13_S_contig1385.3010.1|Name=mRNA_Ecto-sp13_S_contig1385.3010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MSSEAPKNDASRTSSFLSARSFFEEGQGQPQASSGVGPGSNLPA
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mRNA from alignment at Ecto-sp13_S_contig1385:9958..10895-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1385.3010.1 ID=mRNA_Ecto-sp13_S_contig1385.3010.1|Name=mRNA_Ecto-sp13_S_contig1385.3010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=938bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1385:9958..10895- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGACTCCATGGCTTCCGCCTCCAGAAGGCACATCTTGGGTGGCAAGG
ATTTTCCCGGTCTGGTGAATAGCTCCCGGGCGTATCTTCTGATGCACTCC
CGCGCTGCTCTTTTCTGTAGTTGATCTCCCGGGTAAGGTCACCACCTTCG
TTGGCGGGACCACACAGGTATCGAAAGTCAGTCGTCTGGACGTACCTCTG
CCCCGCTGCTTCTTCACGCAAATCGGGAGGGTCTCCGTCTTTTTCTTTGA
CACCGACAACGCGAACTCTCCAACGCCCCTTCGGCAACAACGGTCACCAT
CCTTGCCAGCCCCTCCGCGGTCTTCGAAACAACGCCGGTGTTCATTGGCA
CGTACTCGAGTCTTGTCCCCGCCCCCGGGCCCGTCTCTTTCACTAGGTGC
ACGAAGGTCTGCTTGTGATTGTTTTAGTGGGCGACAAGCCGCAGTCACGC
CAATCGTGAGGTTTGTTGCTGTAGAACGCATGTGATGAGAAAATGATCAG
CGTCTGACTCAAGCCAAACAGAAAAAGAAAGCGGACTTGTTGTACCGCCG
CTGCATTGGAACACCGCGTTTTTCAGGACATCCGCAGGGTTACCTTTGAA
CCAAATTCTTAGATACGGAGTCGCTGTGGAGCAATTTCGTGATTTCAGAC
TTCGTGCACACTTGAGTAGCAGTAGGTGACTGTTGTGTGCAGAGTTGATA
GTTAGCCTATCCCACCCGAAATCCACCCAACCTCATCCCCGACCCCTGTC
CCGCTGCGCGAAACATATTTTGTTTATCGAAGGGCGACCTGGCCGAAGTC
CACGATATGTCCTCCGAAGCCCCCAAGAATGACGCCAGTCGAACCAGCTC
GTTCCTCTCCGCTAGGAGCTTCTTCGAGGAGGGCCAGGGGCAACCGCAGG
CCTCCAGCGGGGTGGGGCCCGGGTCTAATCTCCCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1385:9958..10895-

>mRNA_Ecto-sp13_S_contig1385.3010.1 ID=mRNA_Ecto-sp13_S_contig1385.3010.1|Name=mRNA_Ecto-sp13_S_contig1385.3010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1385:9958..10895- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTCCGAAGCCCCCAAGAATGACGCCAGTCGAACCAGCTCGTTCCT
CTCCGCTAGGAGCTTCTTCGAGGAGGGCCAGGGGCAACCGCAGGCCTCCA
GCGGGGTGGGGCCCGGGTCTAATCTCCCCGCC
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