mRNA_Ecto-sp13_S_contig1385.3009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1385.3009.1
Unique NamemRNA_Ecto-sp13_S_contig1385.3009.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1385.3009.1 vs. uniprot
Match: A0A6H5KLU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.710e-16
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    7 RSADVGLPPPGPGQTAALTLLRPSTAGSQAPVVSMATFLHNAEMGGMTLDEVEASLASPVITTPPSMVRPGTAVSR 234
            RSADV LPP GPGQ A   L + S A SQAPV  +A  L NAEMGGM LD++EASL S ++ +PPSM+RPGT VSR
Sbjct:  141 RSADVVLPPLGPGQAAVRALPKRSAARSQAPVPDIADLLDNAEMGGMALDDLEASLTSLIMNSPPSMLRPGTTVSR 216
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1385.3009.1 vs. uniprot
Match: D7FU95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU95_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.300e-12
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   40 PGQTAALTLLRPSTAGSQAPVVSMATFLHNAEMGGMTLDEVEASLASPVITTPPSMVRPGTAVSR 234
            P   AAL LL+ S AGSQ+P + MA  L+NAE GGMTL+EVEA LASP++ TPP+++RPG   +R
Sbjct:  953 PAPAAALALLQQSVAGSQSPSLDMARLLYNAEEGGMTLEEVEACLASPIVATPPALLRPGVGAAR 1017
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1385.3009.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.630e-11
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   58 LTLLRPSTAGSQAPVVSMATFLHNAEMGGMTLDEVEASLASPVITTPPSMVRPGTAVSRA 237
            L +++ S AGS +P + MA FLH AE GGMTLDEV+A LASP++ TPP+++RPG    RA
Sbjct: 1212 LAMVQQSVAGSPSPSLDMARFLHTAEEGGMTLDEVDACLASPIVATPPALLRPGVGAPRA 1271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1385.3009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLU0_9PHAE1.710e-1663.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU95_ECTSI1.300e-1258.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL50_9PHAE9.630e-1156.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1385contigEcto-sp13_S_contig1385:7257..8645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size542
Hectar predicted targeting categoryother localisation
Exons4
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.5996017-CDS-Ecto-sp13_S_contig1385:7258..73421681462738.5996017-CDS-Ecto-sp13_S_contig1385:7258..7342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1385 7259..7342 -
1681462738.6103354-CDS-Ecto-sp13_S_contig1385:7765..79741681462738.6103354-CDS-Ecto-sp13_S_contig1385:7765..7974Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1385 7766..7974 -
1681462738.6218076-CDS-Ecto-sp13_S_contig1385:7998..81101681462738.6218076-CDS-Ecto-sp13_S_contig1385:7998..8110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1385 7999..8110 -
1681462738.640909-CDS-Ecto-sp13_S_contig1385:8510..86451681462738.640909-CDS-Ecto-sp13_S_contig1385:8510..8645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1385 8511..8645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1385.3009.1prot_Ecto-sp13_S_contig1385.3009.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1385 7259..8645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1385.3009.1

>prot_Ecto-sp13_S_contig1385.3009.1 ID=prot_Ecto-sp13_S_contig1385.3009.1|Name=mRNA_Ecto-sp13_S_contig1385.3009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
TDRSADVGLPPPGPGQTAALTLLRPSTAGSQAPVVSMATFLHNAEMGGMT
LDEVEASLASPVITTPPSMVRPGTAVSRAEAVDTEKEDEAAVSPPTTATG
FMGRVVAGMSMSRLFGPRSPASPSSAAAAATEAADSAEPTAEVETAAAES
LKQEHAAEEAIATAAAAKKAQPDLGNSLEV
back to top

mRNA from alignment at Ecto-sp13_S_contig1385:7257..8645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1385.3009.1 ID=mRNA_Ecto-sp13_S_contig1385.3009.1|Name=mRNA_Ecto-sp13_S_contig1385.3009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1389bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1385:7257..8645- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGACCGTTCTGCCGACGTGGGGCTCCCACCTCCCGGCCCCGGGCAGAC
CGCCGCGCTCACGCTGCTGAGGCCGTCGACGGCGGGGTCTCAGGCGCCGG
TGGTCAGCATGGCCACATTCCTGCACAACGCGGAGGTGCGTGTGCGTGTG
TGTAGCGCAGGGGGGGGAGGGCAAGGGTGTGTGTTGTGTGGGCGTGTTTG
GTTTTGTCCGTGTCCGGTTAGAGGTGTGTGTGCGCTCGCTTGAAGGATTC
CGGTTGTCTCTGGGCGTCTTGAGGCAAGCAGGGCTGCTTGACCGTTCTTG
TGTGGCACCTTTTCATTTTTTATCGTTCGATATTTGTTGCTCCCGGCAGT
GGCGAACAGATCTCGTAAATACCTTGATGTCGTGGACTGCTAGGAGACGT
TTTGTCAAATCAAGAGCAGCATTGGTCGAAAGCATGCTTTCATGTTGCCC
ACCCACCCGTTCCCGCTCTTGGACATTTTTTGCCTTAATTAAGCGCCGTG
GTGGGCGACTCTCATCCGAAACGTAATCATTGCAGATGGGCGGTATGACC
CTCGACGAAGTTGAGGCCAGCCTGGCCTCTCCGGTCATCACCACGCCCCC
GAGCATGGTCCGCCCCGGTACGGCTGTGTCTCGCGCGGAGGCGGTGGTGG
AGGCGATATCGGCGGCTGGGGACACCGAGAAGGAAGACGAGGCTGCTGTG
TCCCCGCCTACCACGGCCACCGGGTTCATGGGCAGGGTTGTTGCGGGCAT
GAGCATGAGCCGCCTCTTCGGCCCCCGCTCCCCGGCCAGCCCGTCCTCTG
CTGCTGCTGCCGCCACTGAAGCTGCAGATAGCGCCGAGCCCACGGCCGAA
GTGGAGACCGCTGCCGCTGAGAGTCTCAAGGTGCTCATTTCGTCTACGTA
CCCTGATGATTGGCGGTGTGTTGTGCTTTGGGTACTGCAGCTGTGACATC
GCAGTATGAGGAGGCAGATACTGGCTGTTGTCGGAGGCAAAATTTGTGCC
AGAGGAATGTTCTCTTTCCTGTGTTTCGGCACGCTCTACGTACCAAGCCG
TGTTTCTGGTCCACACCCGTTCATGATCGTGGCAGAAATCCCCCTACTCG
GTGTTTTTTCGTCGCGGACTGTATGGACTGTCGTGCCAATCGCCAACAGA
CACACACAAACGATGCCCCCCTTAAAAACGTCCAACCCCGACGTTCTCAC
CTTGTAAGCTCCTTCCCTCTTTTCCTTGTCATCCGGTTACCATCTGGCCG
TCCGGTCGGTTGCAATGCGGGGGCCGGTCGTGACAACAACAACCAAATAA
CAGCAGGAACACGCTGCCGAGGAAGCCATCGCAACCGCGGCGGCGGCGAA
GAAGGCGCAGCCGGACCTCGGGAACTCGCTTGAGGTGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1385:7257..8645-

>mRNA_Ecto-sp13_S_contig1385.3009.1 ID=mRNA_Ecto-sp13_S_contig1385.3009.1|Name=mRNA_Ecto-sp13_S_contig1385.3009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1385:7257..8645- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGACCGTTCTGCCGACGTGGGGCTCCCACCTCCCGGCCCCGGGCAGAC
CGCCGCGCTCACGCTGCTGAGGCCGTCGACGGCGGGGTCTCAGGCGCCGG
TGGTCAGCATGGCCACATTCCTGCACAACGCGGAGATGGGCGGTATGACC
CTCGACGAAGTTGAGGCCAGCCTGGCCTCTCCGGTCATCACCACGCCCCC
GAGCATGGTCCGCCCCGGTACGGCTGTGTCTCGCGCGGAGGCGGTGGACA
CCGAGAAGGAAGACGAGGCTGCTGTGTCCCCGCCTACCACGGCCACCGGG
TTCATGGGCAGGGTTGTTGCGGGCATGAGCATGAGCCGCCTCTTCGGCCC
CCGCTCCCCGGCCAGCCCGTCCTCTGCTGCTGCTGCCGCCACTGAAGCTG
CAGATAGCGCCGAGCCCACGGCCGAAGTGGAGACCGCTGCCGCTGAGAGT
CTCAAGCAGGAACACGCTGCCGAGGAAGCCATCGCAACCGCGGCGGCGGC
GAAGAAGGCGCAGCCGGACCTCGGGAACTCGCTTGAGGTG
back to top