mRNA_Ecto-sp13_S_contig13848.3007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13848.3007.1
Unique NamemRNA_Ecto-sp13_S_contig13848.3007.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13848.3007.1 vs. uniprot
Match: D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI)

HSP 1 Score: 890 bits (2300), Expect = 0.000e+0
Identity = 479/493 (97.16%), Postives = 486/493 (98.58%), Query Frame = 1 
Query:    1 QPHLRPVLSLTDKKRYPMGSGKALYLSHSQGDHLEKRWVPGDPPKTASVDVASKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIAKQASAAGEAADLYATARAFLMENPEFQHIWVSAACMPPRLREQKWRGAVPSAAGSNMFEHFHPGALLACDAVLVAPPERESMSYIAEQRARYSDLEMYSTSPWKALEGVITQLMNSVSFYAFRLGKKLIFAGPYPAYPEEPQPSPLDLRRGSAPASIVGADSPVGGRMATESPVDRAKAAAKLMFSKGTRMGWNSKSDISAGDSLEDGRWNDWDGGGGRSTAGSTPTASVTTASVSDFSGGRSFYGGWGDVSRRRRSTPPQGSRIERAVAEALDRLGINGTHSPPERNWRGVLQPCFVLKKTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVWRDLASIGPSASNDRLAVLNLLVFAVSVADGYCCPRRPSDFVGRVLAESLVTPGHLDLWMKDLSPDDSR 1479
            +PHLRPVLSLTDKKRYPMGSGKALYLSHSQGDHLEKRWVPGDPPKTASVDVASKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIAKQASAAGEAADLYATARAFLMENPEFQHIWVSAACMPPRLREQKWRGAVPSAAGSNMFEH HPGAL+ACDAVLVAPPERESMSYIAEQRARYSDLEMYSTSPWKALEGVI QLMNSVSFYAFRLGKKLIFAGPYPAYPEEPQPSPLDLRRGSAPASIVGADSPVGGRMATESPVDRAKAAAKLMFSKGTRMGWNSKSD+SAGDSLEDGRWN WDGGGGRSTAGSTPTASVTTASVSDFSGGRSFYGG GDVSRRRRSTP +GSRIERAVAEALDRLGINGTHSPPERNWRGVLQPCFVL+KTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVW+ LAS+GP ASNDRLAVLNLLVFAVSVADGYCCPRRPSDFVGRVLAESLVTPGHLDLWMKDLSPDDSR
Sbjct:    8 KPHLRPVLSLTDKKRYPMGSGKALYLSHSQGDHLEKRWVPGDPPKTASVDVASKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIAKQASAAGEAADLYATARAFLMENPEFQHIWVSAACMPPRLREQKWRGAVPSAAGSNMFEHLHPGALVACDAVLVAPPERESMSYIAEQRARYSDLEMYSTSPWKALEGVIMQLMNSVSFYAFRLGKKLIFAGPYPAYPEEPQPSPLDLRRGSAPASIVGADSPVGGRMATESPVDRAKAAAKLMFSKGTRMGWNSKSDMSAGDSLEDGRWNGWDGGGGRSTAGSTPTASVTTASVSDFSGGRSFYGGGGDVSRRRRSTPTEGSRIERAVAEALDRLGINGTHSPPERNWRGVLQPCFVLRKTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVWKYLASLGPCASNDRLAVLNLLVFAVSVADGYCCPRRPSDFVGRVLAESLVTPGHLDLWMKDLSPDDSR 500
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BLAST of mRNA_Ecto-sp13_S_contig13848.3007.1 vs. uniprot
Match: A0A835Z0E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.160e-7
Identity = 50/138 (36.23%), Postives = 63/138 (45.65%), Query Frame = 1 
Query: 1093 GINGT--------HSPPERNWRGVLQPCFVLKKTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVWRDLASIGPSASND---RLAVLNLLVFAVSVADGYCCPRRPSDFVGRVLAESL--VTPGH-----LDLWM 1452
            GIN T          P  +NW        ++   R+DV     A GAL+QA+CS+SV+  QA EF   W  L     +A  D   RLAVLNLL F V+  +    P R   +    L ESL  +  G      LDLWM
Sbjct:  266 GINETIDAYALCYEDPVRKNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEGGGLALDLWM 403
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13848.3007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5T8_ECTSI0.000e+097.16Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835Z0E5_9STRA1.160e-736.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13848contigEcto-sp13_S_contig13848:312..3581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score896.3
Seed ortholog evalue6.2e-258
Seed eggNOG ortholog2880.D7G5T8
Model size1479
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-12_009090.1
Cds size1479
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.5448563-CDS-Ecto-sp13_S_contig13848:311..5391681462738.5448563-CDS-Ecto-sp13_S_contig13848:311..539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13848 312..539 -
1681462738.5549061-CDS-Ecto-sp13_S_contig13848:1066..12291681462738.5549061-CDS-Ecto-sp13_S_contig13848:1066..1229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13848 1067..1229 -
1681462738.5633132-CDS-Ecto-sp13_S_contig13848:2098..26261681462738.5633132-CDS-Ecto-sp13_S_contig13848:2098..2626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13848 2099..2626 -
1681462738.5717995-CDS-Ecto-sp13_S_contig13848:3021..35811681462738.5717995-CDS-Ecto-sp13_S_contig13848:3021..3581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13848 3022..3581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13848.3007.1prot_Ecto-sp13_S_contig13848.3007.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13848 312..3581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13848.3007.1

>prot_Ecto-sp13_S_contig13848.3007.1 ID=prot_Ecto-sp13_S_contig13848.3007.1|Name=mRNA_Ecto-sp13_S_contig13848.3007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=493bp
QPHLRPVLSLTDKKRYPMGSGKALYLSHSQGDHLEKRWVPGDPPKTASVD
VASKAAAAAAVAAGGAVAVAVAAAAAGAAQAAAGAVIAKQASAAGEAADL
YATARAFLMENPEFQHIWVSAACMPPRLREQKWRGAVPSAAGSNMFEHFH
PGALLACDAVLVAPPERESMSYIAEQRARYSDLEMYSTSPWKALEGVITQ
LMNSVSFYAFRLGKKLIFAGPYPAYPEEPQPSPLDLRRGSAPASIVGADS
PVGGRMATESPVDRAKAAAKLMFSKGTRMGWNSKSDISAGDSLEDGRWND
WDGGGGRSTAGSTPTASVTTASVSDFSGGRSFYGGWGDVSRRRRSTPPQG
SRIERAVAEALDRLGINGTHSPPERNWRGVLQPCFVLKKTRQDVEKYSDA
QGALKQAMCSLSVSIDQAEEFFLVWRDLASIGPSASNDRLAVLNLLVFAV
SVADGYCCPRRPSDFVGRVLAESLVTPGHLDLWMKDLSPDDSR
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mRNA from alignment at Ecto-sp13_S_contig13848:312..3581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13848.3007.1 ID=mRNA_Ecto-sp13_S_contig13848.3007.1|Name=mRNA_Ecto-sp13_S_contig13848.3007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13848:312..3581- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCACACCTTCGGCCGGTGCTATCGCTAACCGATAAAAAGAGGTACCC
CATGGGGTCGGGCAAGGCGTTGTATCTCAGCCACTCCCAGGGAGATCACC
TCGAGAAGCGCTGGGTGCCCGGCGACCCTCCAAAGACCGCCAGCGTGGAC
GTGGCCTCCAAGGCGGCGGCGGCGGCGGCGGTGGCGGCGGGTGGAGCGGT
GGCCGTGGCCGTGGCGGCCGCCGCCGCAGGCGCGGCGCAAGCGGCCGCCG
GGGCCGTGATCGCGAAGCAGGCGTCGGCAGCGGGGGAGGCCGCCGACCTC
TACGCCACGGCGAGGGCCTTCTTGATGGAGAACCCCGAGTTCCAGCACAT
CTGGGTGAGCGCGGCGTGCATGCCTCCTCGTCTTCGCGAGCAGAAGTGGC
GCGGAGCCGTGCCTTCCGCGGCTGGGTCTAACATGTTCGAGCACTTTCAC
CCGGGGGCTCTGTTGGCGTGCGATGCGGTGCTCGTGGCTCCTCCGGAGAG
GGAAAGCATGTCGTACATCGCGGAGCAGAGGGCGCGTTACTCGGACTTGG
AGATGTACAGGTGAGGGCGTTGGTACAGCAGTCAGCCGTTCGTGCTGATG
GCACGCTAGTGGAGTCAGGTCGAGCTATGCCACGATGAGGTCTCAGGCTG
GTGGGCGTCTAAGCCAAAACCGAAGTTGTCTCACCATGTACTCACTCGTG
TCTGTCTGTTTTGTCGGGATCGAAAGGGCAAGGCGCGCATCGGGTCTACG
ACATCTATGGACAGACGGTTGATTTAGGAGCGATCCACTCGTCTGGCTTT
CTTGAACCAACACAGAACGCTGTATCTCGATACTTGAGTTTCTTGTTTCT
TGTTTCTTGTCATATTCCCACCCCCACCCCCCTTCGTGGACTCAACTCTC
GCATGCCATCCACCCAACCCTGCCATTCTCCCTGACCCCTTGTGCTATTT
TCCAGCACGAGCCCATGGAAAGCGTTGGAAGGGGTCATAACGCAGCTCAT
GAACAGCGTCAGCTTCTACGCCTTCCGCCTCGGCAAGAAGCTCATCTTCG
CCGGACCGTACCCCGCCTACCCGGAAGAGCCCCAGCCCTCCCCGCTCGAC
CTCAGGAGGGGCTCCGCCCCCGCGTCGATCGTCGGAGCCGACAGTCCCGT
GGGCGGAAGGATGGCGACCGAGTCGCCTGTGGACAGGGCCAAGGCGGCGG
CCAAGCTCATGTTCTCGAAAGGGACGCGGATGGGGTGGAACAGCAAGTCG
GACATTAGTGCGGGGGACTCCCTGGAGGATGGCCGGTGGAATGACTGGGA
CGGGGGAGGGGGGCGCAGCACGGCAGGATCGACACCGACAGCTTCGGTGA
CGACGGCATCGGTGTCGGACTTCTCTGGGGGTAGGAGCTTTTACGGCGGC
TGGGGCGACGTGAGCAGACGGCGGAGAAGCACGCCGCCGCAGGGGTCGAG
AATAGAGAGAGCCGTTGCGGAGGCGCTGGACAGGTTCGTCATCCCTACAG
CACTGTGACTTTATTTTCCGCCCTACTTGTACGGCAGTAGCGAGAAACCT
CTCTCTGGCATAACAGTATTCGATCATAGCACAAGTCTTGTCTCCACACA
CTCTGTAGTCGCTCAGGCGCTGGACCAGTGCGTGCTCTTTGTTGCCGCAA
TGATTTTAACGCTACAGGTACGACCAAGTACAGCAGTAGCCTACACCTCT
CTCTAGCATTCGTCAGCTAGCAAGCTAAGGAGTCGCGGGGGGCAACACTC
CTTGGTCGTATGGCAGTTAATTTTTGTCAACCTGTGGTGGGACAGGGCCC
CCGTGTGCAGCTGGCTTGTGGCATGGGAAGATGTGACGCCTGTGCTGTGA
ATGATCGAAGGTTTGATACCGCCCAATGCGGATACCGTGCGCGATTTTCC
TACCCGTGTCGATGCGTATGTATGGCATCTCTTTTGTACGATGAACGAAT
CACATGCATGTCTAGGGAGGACAAGCTATTGCCATGCGGACGAACACTTT
GTCCGACGTATTTTTTGTTTCTTCATTTTGCTTGATGTGTGTGCGGTTAT
GGTTTTCGCCGTGTATATTTCGGAGCAGGTGTTACAGGGTGAAGGGGGAG
AGGGGAGGGAGGAACGCTTCCAATTACCGACACTCACTTGCGACCGTCTA
AGCCTCCCGGAGGCACACCACCAGACACACGCCTCCGCACTGCATGTCAT
GTCAAACCCTTATCGAACCACTTCCTTTGATTCGATTAGTATATCGTGAT
GGTTGATTTTCTGTCAGGTTGGGAATCAAGGTGCGTGCATGTCCAACGCC
GACGTATACCACATCTTCATTCGATACTATTTCTCGTTTTTGTTGTTGTC
AGATTGGGGATCAACGGCACCCATTCTCCGCCTGAGCGCAACTGGCGGGG
AGTGCTGCAGCCGTGCTTCGTTCTGAAAAAGACAAGACAGGACGTGGAGA
AGTACAGCGACGCGCAGGGAGCGCTCAAGCAGGCCATGTGCTCGCTCAGT
GTCTCCATAGACCAGGTGCGTGCGTGTTGTTGCCTGTCCTCCCACCTCCA
AGGGGTCGTACAAGAGACGAGAGGAAGTATGATGTACAAGAGAGAGGTGG
CCAGGTTTTGGGCACGCGACGCAATCGTATTATTTTTTCCCAACCAGAGT
ATGGCATCGGTTCCGGTCTTGGTGTCTGGCAAACTCCCTTCAGGACAAGA
CTTGATGCTTGTCCTTAGTTGGCAGCAGTTGGCATGGGCCGCTCCAAGCG
ACGGACGGACGAATGAAATTGCCGTAGTCTATTGGCTCCTAAAGCGCGAA
AACGCTTTGTATTCAACGGTCTGCTGTACTGCTGCAGTACGGCTCCCGCG
TCTGGGGAGACACGAGACGCGGAGGAGGTGTGTGTGTGTGCCGTCGGCCC
CAACTGTCTTCTCTGCTGAACATCAACGTGTTCAGTTCTCGTGAATCCCT
GAACGCGTGGCCGCTGCCTCAATATTTTTGCTCGTGCTTTTGCTTTCCGT
GCGCGATTTCGCCTCACTTTTTTTTTGTTTTTTTGAAATTAGGCCGAGGA
GTTCTTCCTGGTGTGGAGGGACCTCGCCTCTATAGGCCCCTCCGCCTCCA
ACGACCGGCTGGCGGTGTTGAACCTTCTCGTCTTTGCTGTATCGGTGGCC
GACGGCTACTGCTGCCCACGACGGCCGTCCGATTTCGTGGGCCGTGTGCT
GGCGGAGAGCCTCGTCACGCCGGGGCACCTCGACCTGTGGATGAAGGACC
TGTCTCCGGACGATAGCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13848:312..3581-

>mRNA_Ecto-sp13_S_contig13848.3007.1 ID=mRNA_Ecto-sp13_S_contig13848.3007.1|Name=mRNA_Ecto-sp13_S_contig13848.3007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13848:312..3581- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCACACCTTCGGCCGGTGCTATCGCTAACCGATAAAAAGAGGTACCC
CATGGGGTCGGGCAAGGCGTTGTATCTCAGCCACTCCCAGGGAGATCACC
TCGAGAAGCGCTGGGTGCCCGGCGACCCTCCAAAGACCGCCAGCGTGGAC
GTGGCCTCCAAGGCGGCGGCGGCGGCGGCGGTGGCGGCGGGTGGAGCGGT
GGCCGTGGCCGTGGCGGCCGCCGCCGCAGGCGCGGCGCAAGCGGCCGCCG
GGGCCGTGATCGCGAAGCAGGCGTCGGCAGCGGGGGAGGCCGCCGACCTC
TACGCCACGGCGAGGGCCTTCTTGATGGAGAACCCCGAGTTCCAGCACAT
CTGGGTGAGCGCGGCGTGCATGCCTCCTCGTCTTCGCGAGCAGAAGTGGC
GCGGAGCCGTGCCTTCCGCGGCTGGGTCTAACATGTTCGAGCACTTTCAC
CCGGGGGCTCTGTTGGCGTGCGATGCGGTGCTCGTGGCTCCTCCGGAGAG
GGAAAGCATGTCGTACATCGCGGAGCAGAGGGCGCGTTACTCGGACTTGG
AGATGTACAGCACGAGCCCATGGAAAGCGTTGGAAGGGGTCATAACGCAG
CTCATGAACAGCGTCAGCTTCTACGCCTTCCGCCTCGGCAAGAAGCTCAT
CTTCGCCGGACCGTACCCCGCCTACCCGGAAGAGCCCCAGCCCTCCCCGC
TCGACCTCAGGAGGGGCTCCGCCCCCGCGTCGATCGTCGGAGCCGACAGT
CCCGTGGGCGGAAGGATGGCGACCGAGTCGCCTGTGGACAGGGCCAAGGC
GGCGGCCAAGCTCATGTTCTCGAAAGGGACGCGGATGGGGTGGAACAGCA
AGTCGGACATTAGTGCGGGGGACTCCCTGGAGGATGGCCGGTGGAATGAC
TGGGACGGGGGAGGGGGGCGCAGCACGGCAGGATCGACACCGACAGCTTC
GGTGACGACGGCATCGGTGTCGGACTTCTCTGGGGGTAGGAGCTTTTACG
GCGGCTGGGGCGACGTGAGCAGACGGCGGAGAAGCACGCCGCCGCAGGGG
TCGAGAATAGAGAGAGCCGTTGCGGAGGCGCTGGACAGATTGGGGATCAA
CGGCACCCATTCTCCGCCTGAGCGCAACTGGCGGGGAGTGCTGCAGCCGT
GCTTCGTTCTGAAAAAGACAAGACAGGACGTGGAGAAGTACAGCGACGCG
CAGGGAGCGCTCAAGCAGGCCATGTGCTCGCTCAGTGTCTCCATAGACCA
GGCCGAGGAGTTCTTCCTGGTGTGGAGGGACCTCGCCTCTATAGGCCCCT
CCGCCTCCAACGACCGGCTGGCGGTGTTGAACCTTCTCGTCTTTGCTGTA
TCGGTGGCCGACGGCTACTGCTGCCCACGACGGCCGTCCGATTTCGTGGG
CCGTGTGCTGGCGGAGAGCCTCGTCACGCCGGGGCACCTCGACCTGTGGA
TGAAGGACCTGTCTCCGGACGATAGCCGG
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