mRNA_Ecto-sp13_S_contig13846.3006.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13846.3006.1
Unique NamemRNA_Ecto-sp13_S_contig13846.3006.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13846.3006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13846contigEcto-sp13_S_contig13846:1699..3347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons2
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.4963875-CDS-Ecto-sp13_S_contig13846:1698..18031681462738.4963875-CDS-Ecto-sp13_S_contig13846:1698..1803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13846 1699..1803 -
1681462738.5098083-CDS-Ecto-sp13_S_contig13846:2885..32391681462738.5098083-CDS-Ecto-sp13_S_contig13846:2885..3239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13846 2886..3239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.5190985-UTR-Ecto-sp13_S_contig13846:3239..33471681462738.5190985-UTR-Ecto-sp13_S_contig13846:3239..3347Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13846 3240..3347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13846.3006.1prot_Ecto-sp13_S_contig13846.3006.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13846 1699..3239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13846.3006.1

>prot_Ecto-sp13_S_contig13846.3006.1 ID=prot_Ecto-sp13_S_contig13846.3006.1|Name=mRNA_Ecto-sp13_S_contig13846.3006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
MKRVRQPFGETESPNSPPPSSSSAQKRVRQHQHHQQRPRHHDDIQDADQR
QQQQQQQGPFQALLSQHGVTWPSAAAMVDVESDKRMLGFSCRSNPSKLRL
AVEKALVYDRARRSEFVESMKEFMAGPVQALRRALLPLDCCGEGRAAGGG
MGG
back to top

mRNA from alignment at Ecto-sp13_S_contig13846:1699..3347-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13846.3006.1 ID=mRNA_Ecto-sp13_S_contig13846.3006.1|Name=mRNA_Ecto-sp13_S_contig13846.3006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1649bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13846:1699..3347- (Ectocarpus species13 EcNAP12_S_4_19m)
AAATTCAAAAATCGAGGTTTGAACGGCAAGCAGAACTAACTGTAGCTCCC
AGCAGCACCAGCGCCCAGGCAGCTGTTGTCGCTTCCTGGCCCTGCTTCTG
TTGCTGCCATGAAGCGTGTACGTCAGCCCTTCGGAGAGACCGAGTCGCCG
AACTCGCCACCCCCATCGTCCTCCTCAGCACAGAAGCGAGTCCGGCAACA
TCAGCACCACCAACAAAGGCCGCGCCACCATGACGACATACAGGACGCGG
ACCAACGACAACAACAGCAGCAACAGCAGGGCCCCTTCCAAGCTCTCCTG
TCTCAGCACGGCGTGACGTGGCCGTCTGCGGCGGCCATGGTCGACGTGGA
GAGCGACAAGAGGATGCTGGGGTTTTCTTGCCGTAGCAACCCTTCCAAGC
TGAGGTTGGCGGTTGAAAAGGCGCTCGTGTACGACCGAGCTCGGCGGAGC
GAATTCGTCGAGGTATTTTCTTCGTCAGCGCTCTATTTTCAAGTGATTTA
TTCCCGCCCTCGCGTGCAGAGTTCACGTTTCATAAATTCACACGGCAGGT
TGTTGTCGCAAAGATCGTGGAATTGCCTCACATATCATGTGCATCAAGTA
TCCGCTCATGCGGTATCCCACGACCAAAGGGTCTCGCCCGTGAACATGCG
CCTGGGAAAAATGTACCACCATTTATTTTTGAGTCATTGCCCAACACTCG
TGGGATGCCGACGCTGTTCATGTATACACACTGTAGTGCGAATAGTAGCC
AGTCGTCCTTCACTGTCTTATGAGTGTACGCTGGGTTGTGTTGGGTTACT
CCGAAGATACGGCGACATGGTTTTGTTGAGGGGGACTCGCAGGAAAACGT
CGTCTCCATGACAGAGGACTTGAGCGCAGAAACACTAGCGAGTATCAACA
TAGCGGTCGATCCCACTGAACATCCTACACCCCTCCTGGCAATGGTCTAC
AGGTGTACGACTTCGGCATGCATTTCATTCCTTACACCCGCACACCCCCC
ACACCTACCGCGTTGGGGGCATATTTCACTCATTTCCTGAACGCACGAAG
CACACGGGGGAGCAGGCGATCATTGCTGATGTGCCCTTTGCTTGCTTCTG
GGGGACGCCGCCGCATGCACGTAGGATTTCTACAACAGCAGGGGAGGCCG
AGAGGCACGGTCGTGTGTGTGATCGACGCCCGCCGAGTGCGAGCTTCGTC
ATGCGCAAAATAACTCTTCCGTTGTTGGCTTGATTTCCGTTTTTCTTAAG
CCATCCGTATTGGTGGAAAGTGACTCGTCCGTCGCCTTTGCTCGTCGTTG
GGCCACCTACATCCCTGTAAACCGTGTGGTTGGCGCTGTGAGTACCAGGG
CTGCAATAGCAAGCATCACTGCTGTGTGCACGGGCAAGTGTGTCCCTGCC
TTCATTACTCGACCTCTCCTCACTAGGACCTGAGCTCTGCGTTGACAGCA
ATCACACGCATCATTCCTCCTTCAATACAACACTTTTTCCTCTCTTCCTA
CACAACGCCCCTGAGCTTTTTGCCACCCGTGATGCAATTTCCAGAGCATG
AAGGAATTCATGGCTGGACCCGTTCAGGCCCTGAGGCGGGCACTACTGCC
CCTCGACTGCTGTGGCGAGGGTCGTGCAGCAGGTGGAGGGATGGGGGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13846:1699..3347-

>mRNA_Ecto-sp13_S_contig13846.3006.1 ID=mRNA_Ecto-sp13_S_contig13846.3006.1|Name=mRNA_Ecto-sp13_S_contig13846.3006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13846:1699..3347- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCGTGTACGTCAGCCCTTCGGAGAGACCGAGTCGCCGAACTCGCC
ACCCCCATCGTCCTCCTCAGCACAGAAGCGAGTCCGGCAACATCAGCACC
ACCAACAAAGGCCGCGCCACCATGACGACATACAGGACGCGGACCAACGA
CAACAACAGCAGCAACAGCAGGGCCCCTTCCAAGCTCTCCTGTCTCAGCA
CGGCGTGACGTGGCCGTCTGCGGCGGCCATGGTCGACGTGGAGAGCGACA
AGAGGATGCTGGGGTTTTCTTGCCGTAGCAACCCTTCCAAGCTGAGGTTG
GCGGTTGAAAAGGCGCTCGTGTACGACCGAGCTCGGCGGAGCGAATTCGT
CGAGAGCATGAAGGAATTCATGGCTGGACCCGTTCAGGCCCTGAGGCGGG
CACTACTGCCCCTCGACTGCTGTGGCGAGGGTCGTGCAGCAGGTGGAGGG
ATGGGGGGC
back to top