prot_Ecto-sp13_S_contig13846.3005.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13846.3005.1
Unique Nameprot_Ecto-sp13_S_contig13846.3005.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length53
Homology
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.890e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 48
            DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV
Sbjct:   86 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 133          
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A836CD26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD26_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.270e-10
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLP 46
            DLPRL+L Q+R+LDHLVD   LT K+LEVL VLP+ L+R++I+YLP
Sbjct:  261 DLPRLILTQMRWLDHLVDPGGLTEKLLEVLPVLPLALERDLIAYLP 306          
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: UPI000D176C49 (Fanconi anemia group D2 protein-like isoform X2 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D176C49)

HSP 1 Score: 59.7 bits (143), Expect = 4.670e-9
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    2 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 48
            +PRL+LNQ ++L+ LVDS SLT K+LEVLT+ P+ L++E+IS+LPEV
Sbjct:  157 IPRLILNQFKWLNFLVDSKSLTEKLLEVLTICPLALKKEIISFLPEV 203          
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A2K1KVD6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KVD6_PHYPA)

HSP 1 Score: 59.7 bits (143), Expect = 4.670e-9
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    2 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 48
            +PRL+LNQ ++L+ LVDS SLT K+LEVLT+ P+ L++E+IS+LPEV
Sbjct:  157 IPRLILNQFKWLNFLVDSKSLTEKLLEVLTICPLALKKEIISFLPEV 203          
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A2R6XWB7_MARPO (Uncharacterized protein n=5 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XWB7_MARPO)

HSP 1 Score: 58.5 bits (140), Expect = 1.190e-8
Identity = 26/47 (55.32%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    2 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 48
            +PRL+L+  R+LD++VDS +LT K+LE++T+ PV L++E+IS+LPEV
Sbjct:  162 IPRLILSHFRWLDYVVDSRNLTEKLLEIITICPVGLKKEIISFLPEV 208          
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A2G2YYN1_CAPAN (Uncharacterized protein n=2 Tax=Capsicum TaxID=4071 RepID=A0A2G2YYN1_CAPAN)

HSP 1 Score: 54.7 bits (130), Expect = 2.710e-7
Identity = 26/48 (54.17%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 48
            D+ RL+LNQ R+LD LVDS + T K+L+VL++ PV+L++E+I  LPE+
Sbjct:  114 DIARLILNQFRWLDFLVDSEAFTEKLLQVLSISPVHLKKEIIGSLPEI 161          
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A1U8HMS9_CAPAN (LOW QUALITY PROTEIN: Fanconi anemia group D2 protein homolog n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8HMS9_CAPAN)

HSP 1 Score: 54.7 bits (130), Expect = 2.730e-7
Identity = 26/48 (54.17%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 48
            D+ RL+LNQ R+LD LVDS + T K+L+VL++ PV+L++E+I  LPE+
Sbjct:  229 DIARLILNQFRWLDFLVDSEAFTEKLLQVLSISPVHLKKEIIGSLPEI 276          
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A068UE66_COFCA (Uncharacterized protein n=3 Tax=Coffea TaxID=13442 RepID=A0A068UE66_COFCA)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-7
Identity = 26/48 (54.17%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 48
            D+ RL+LNQ R+LD LVDS + T K+L+VL++ P++L++E+I  LPEV
Sbjct:  183 DIARLILNQFRWLDFLVDSQAFTEKLLQVLSICPLHLKKEIIGSLPEV 230          
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A166DXL2_DAUCS (Uncharacterized protein n=4 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166DXL2_DAUCS)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-7
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 48
            D+ RL+LNQ R+LD LVDS + T K+LEVL++ P+ L+RE+I  LPE+
Sbjct:  173 DIARLILNQFRWLDFLVDSEAFTNKLLEVLSICPLYLKREIIGSLPEL 220          
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A8J5A1K2_9CHEL (Fanconi anemia group D2 protein n=3 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5A1K2_9CHEL)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-7
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 48
            D+P LV++Q R+LDH+VDS+ L  K+LEV+ +  +N+Q+E+IS LPE+
Sbjct:   72 DIPHLVMSQFRWLDHVVDSSGLVSKMLEVIGIAQLNVQKEIISCLPEI 119          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0C8_ECTSI4.890e-20100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD26_9STRA9.270e-1065.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000D176C494.670e-961.70Fanconi anemia group D2 protein-like isoform X2 n=... [more]
A0A2K1KVD6_PHYPA4.670e-961.70Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A2R6XWB7_MARPO1.190e-855.32Uncharacterized protein n=5 Tax=Marchantia polymor... [more]
A0A2G2YYN1_CAPAN2.710e-754.17Uncharacterized protein n=2 Tax=Capsicum TaxID=407... [more]
A0A1U8HMS9_CAPAN2.730e-754.17LOW QUALITY PROTEIN: Fanconi anemia group D2 prote... [more]
A0A068UE66_COFCA3.740e-754.17Uncharacterized protein n=3 Tax=Coffea TaxID=13442... [more]
A0A166DXL2_DAUCS3.740e-756.25Uncharacterized protein n=4 Tax=Daucus carota subs... [more]
A0A8J5A1K2_9CHEL3.740e-752.08Fanconi anemia group D2 protein n=3 Tax=Nymphon st... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029448Fanconi anaemia protein FANCD2PFAMPF14631FancD2coord: 2..48
e-value: 3.8E-12
score: 44.6
IPR029448Fanconi anaemia protein FANCD2PANTHERPTHR32086FAMILY NOT NAMEDcoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13846contigEcto-sp13_S_contig13846:823..981 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13846.3005.1mRNA_Ecto-sp13_S_contig13846.3005.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13846 823..981 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13846.3005.1 ID=prot_Ecto-sp13_S_contig13846.3005.1|Name=mRNA_Ecto-sp13_S_contig13846.3005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEVCF
RF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029448FANCD2