mRNA_Ecto-sp13_S_contig13846.3005.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13846.3005.1
Unique NamemRNA_Ecto-sp13_S_contig13846.3005.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.890e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 144
            DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV
Sbjct:   86 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 133
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A836CD26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD26_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.270e-10
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLP 138
            DLPRL+L Q+R+LDHLVD   LT K+LEVL VLP+ L+R++I+YLP
Sbjct:  261 DLPRLILTQMRWLDHLVDPGGLTEKLLEVLPVLPLALERDLIAYLP 306
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: UPI000D176C49 (Fanconi anemia group D2 protein-like isoform X2 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D176C49)

HSP 1 Score: 59.7 bits (143), Expect = 4.670e-9
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    4 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 144
            +PRL+LNQ ++L+ LVDS SLT K+LEVLT+ P+ L++E+IS+LPEV
Sbjct:  157 IPRLILNQFKWLNFLVDSKSLTEKLLEVLTICPLALKKEIISFLPEV 203
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A2K1KVD6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KVD6_PHYPA)

HSP 1 Score: 59.7 bits (143), Expect = 4.670e-9
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    4 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 144
            +PRL+LNQ ++L+ LVDS SLT K+LEVLT+ P+ L++E+IS+LPEV
Sbjct:  157 IPRLILNQFKWLNFLVDSKSLTEKLLEVLTICPLALKKEIISFLPEV 203
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A2R6XWB7_MARPO (Uncharacterized protein n=5 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XWB7_MARPO)

HSP 1 Score: 58.5 bits (140), Expect = 1.190e-8
Identity = 26/47 (55.32%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    4 LPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 144
            +PRL+L+  R+LD++VDS +LT K+LE++T+ PV L++E+IS+LPEV
Sbjct:  162 IPRLILSHFRWLDYVVDSRNLTEKLLEIITICPVGLKKEIISFLPEV 208
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A2G2YYN1_CAPAN (Uncharacterized protein n=2 Tax=Capsicum TaxID=4071 RepID=A0A2G2YYN1_CAPAN)

HSP 1 Score: 54.7 bits (130), Expect = 2.710e-7
Identity = 26/48 (54.17%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 144
            D+ RL+LNQ R+LD LVDS + T K+L+VL++ PV+L++E+I  LPE+
Sbjct:  114 DIARLILNQFRWLDFLVDSEAFTEKLLQVLSISPVHLKKEIIGSLPEI 161
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A1U8HMS9_CAPAN (LOW QUALITY PROTEIN: Fanconi anemia group D2 protein homolog n=2 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8HMS9_CAPAN)

HSP 1 Score: 54.7 bits (130), Expect = 2.730e-7
Identity = 26/48 (54.17%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 144
            D+ RL+LNQ R+LD LVDS + T K+L+VL++ PV+L++E+I  LPE+
Sbjct:  229 DIARLILNQFRWLDFLVDSEAFTEKLLQVLSISPVHLKKEIIGSLPEI 276
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A068UE66_COFCA (Uncharacterized protein n=3 Tax=Coffea TaxID=13442 RepID=A0A068UE66_COFCA)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-7
Identity = 26/48 (54.17%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 144
            D+ RL+LNQ R+LD LVDS + T K+L+VL++ P++L++E+I  LPEV
Sbjct:  183 DIARLILNQFRWLDFLVDSQAFTEKLLQVLSICPLHLKKEIIGSLPEV 230
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A166DXL2_DAUCS (Uncharacterized protein n=4 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166DXL2_DAUCS)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-7
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 144
            D+ RL+LNQ R+LD LVDS + T K+LEVL++ P+ L+RE+I  LPE+
Sbjct:  173 DIARLILNQFRWLDFLVDSEAFTNKLLEVLSICPLYLKREIIGSLPEL 220
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BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Match: A0A8J5A1K2_9CHEL (Fanconi anemia group D2 protein n=3 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5A1K2_9CHEL)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-7
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEV 144
            D+P LV++Q R+LDH+VDS+ L  K+LEV+ +  +N+Q+E+IS LPE+
Sbjct:   72 DIPHLVMSQFRWLDHVVDSSGLVSKMLEVIGIAQLNVQKEIISCLPEI 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13846.3005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0C8_ECTSI4.890e-20100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD26_9STRA9.270e-1065.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000D176C494.670e-961.70Fanconi anemia group D2 protein-like isoform X2 n=... [more]
A0A2K1KVD6_PHYPA4.670e-961.70Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A2R6XWB7_MARPO1.190e-855.32Uncharacterized protein n=5 Tax=Marchantia polymor... [more]
A0A2G2YYN1_CAPAN2.710e-754.17Uncharacterized protein n=2 Tax=Capsicum TaxID=407... [more]
A0A1U8HMS9_CAPAN2.730e-754.17LOW QUALITY PROTEIN: Fanconi anemia group D2 prote... [more]
A0A068UE66_COFCA3.740e-754.17Uncharacterized protein n=3 Tax=Coffea TaxID=13442... [more]
A0A166DXL2_DAUCS3.740e-756.25Uncharacterized protein n=4 Tax=Daucus carota subs... [more]
A0A8J5A1K2_9CHEL3.740e-752.08Fanconi anemia group D2 protein n=3 Tax=Nymphon st... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13846contigEcto-sp13_S_contig13846:823..981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score93.2
Seed ortholog evalue3.9e-17
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
Model size159
KEGG koko:K10891
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
Exons1
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
Cds size159
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.469838-CDS-Ecto-sp13_S_contig13846:822..9811681462738.469838-CDS-Ecto-sp13_S_contig13846:822..981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13846 823..981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13846.3005.1prot_Ecto-sp13_S_contig13846.3005.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13846 823..981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13846.3005.1

>prot_Ecto-sp13_S_contig13846.3005.1 ID=prot_Ecto-sp13_S_contig13846.3005.1|Name=mRNA_Ecto-sp13_S_contig13846.3005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
DLPRLVLNQVRFLDHLVDSTSLTRKILEVLTVLPVNLQREMISYLPEVCF
RF*
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mRNA from alignment at Ecto-sp13_S_contig13846:823..981-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13846.3005.1 ID=mRNA_Ecto-sp13_S_contig13846.3005.1|Name=mRNA_Ecto-sp13_S_contig13846.3005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13846:823..981- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTCCCTCGGCTGGTGCTGAACCAAGTCCGCTTTCTCGACCACCTCGT
CGACAGCACTTCCCTCACCAGGAAAATTCTGGAGGTGTTGACAGTGCTGC
CGGTAAACCTCCAGCGAGAGATGATCTCCTACCTGCCGGAGGTGTGTTTT
CGCTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13846:823..981-

>mRNA_Ecto-sp13_S_contig13846.3005.1 ID=mRNA_Ecto-sp13_S_contig13846.3005.1|Name=mRNA_Ecto-sp13_S_contig13846.3005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13846:823..981- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTCCCTCGGCTGGTGCTGAACCAAGTCCGCTTTCTCGACCACCTCGT
CGACAGCACTTCCCTCACCAGGAAAATTCTGGAGGTGTTGACAGTGCTGC
CGGTAAACCTCCAGCGAGAGATGATCTCCTACCTGCCGGAGGTGTGTTTT
CGCTTTTAG
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