prot_Ecto-sp13_S_contig13840.3003.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13840.3003.1
Unique Nameprot_Ecto-sp13_S_contig13840.3003.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length79
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: D8LER0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER0_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.380e-42
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 MNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAKPPGPAGIRP 78
            MNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQ+DADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAKPPGPAGIRP
Sbjct:  717 MNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQMDADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAKPPGPAGIRP 794
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BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A6H5JBQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.690e-15
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:    2 NIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVDT 56
             IGI TSF +PVVSRWGVTFVIVFY+R  +Q+DA+ K FIE  V  W+ DATVDT
Sbjct:  231 KIGIGTSFALPVVSRWGVTFVIVFYTRATIQLDAEKKVFIENMVRGWELDATVDT 285
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BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A835ZCD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.090e-14
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0 
Query:    4 GIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVD 55
            GIRT+FGVPVVSR GVTFVIVFYSR  V V+  ++AFIERTV +WKFDA VD
Sbjct:  573 GIRTTFGVPVVSRRGVTFVIVFYSRKTVHVNPALRAFIERTVRSWKFDANVD 624
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BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: D8LLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI8_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.700e-5
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 
Query:    2 NIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAF 40
             IGI TSF +PVVSRWGVTFVIVFY+R  +Q +    AF
Sbjct:  277 KIGIGTSFALPVVSRWGVTFVIVFYTRATIQGEKRESAF 315
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LER0_ECTSI2.380e-4298.72RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBQ8_9PHAE2.690e-1567.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCD8_9STRA1.090e-1475.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LLI8_ECTSI1.700e-564.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13840contigEcto-sp13_S_contig13840:2056..2778 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13840.3003.1mRNA_Ecto-sp13_S_contig13840.3003.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13840 661..2894 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13840.3003.1 ID=prot_Ecto-sp13_S_contig13840.3003.1|Name=mRNA_Ecto-sp13_S_contig13840.3003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKF
DATVDTDVCQGDAAPATAKPPGPAGIRP*
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