mRNA_Ecto-sp13_S_contig13839.3001.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13839.3001.1
Unique NamemRNA_Ecto-sp13_S_contig13839.3001.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: D8LU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU46_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 2.060e-82
Identity = 144/226 (63.72%), Postives = 157/226 (69.47%), Query Frame = 1
Query:    1 AIFYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRYAHNQFH-----QV*SYNRNHTLP*LSPICDKLTLHVRLLISLRSTPCIPSVETT-SSIGVD 660
            A+F  AVNYPPQER TLQDKGVFWVDFASVVQ+FRHV +NWNPN FRFRNL HLRWPVEIGPKNDSFN+GDNPQLSLSVKSGAT A SGES SA             TVWVLLTRHVT IESDP EGDFLTMHVY DTQGKRVYYPE     G     P TL R +    H     ++   +R    P +  +   L  H    I++RS PCIPSVE T S+IGVD
Sbjct:   19 ALFDMAVNYPPQERQTLQDKGVFWVDFASVVQYFRHVFLNWNPNTFRFRNLTHLRWPVEIGPKNDSFNLGDNPQLSLSVKSGATSAGSGESGSAAA-----------TVWVLLTRHVTVIESDPAEGDFLTMHVYADTQGKRVYYPENQCLGGF---TPTTLTRSS-GMTHTTKPLRINVPSRVQVPPGVPVLRRVLPYHRYRAITVRSAPCIPSVEPTPSTIGVD 229          
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A6H5KSF9_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF9_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 1.140e-63
Identity = 116/165 (70.30%), Postives = 130/165 (78.79%), Query Frame = 1
Query:   16 AVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXX-----TVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
            AV Y   E   L+D GVFWVDFAS+ Q+F++V MNWNP++F FR +MHLRWPV +GPKNDSFN+GDNPQLSLSVKS A  A SG     XXXXXXXXXXX       TVWVLL+RHVT IESDP EGDFLTMHVY  TQGKRVYYP+ PMF GIYTNNP+TLVR+
Sbjct:   71 AVKYD-LETAMLKDNGVFWVDFASIFQYFKNVFMNWNPSVFSFRFVMHLRWPVNMGPKNDSFNLGDNPQLSLSVKSSAKSAVSGAXXXXXXXXXXXXXXXVARTQSPTVWVLLSRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRF 234          
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: D8LU44_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU44_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 1.460e-63
Identity = 118/165 (71.52%), Postives = 132/165 (80.00%), Query Frame = 1
Query:   16 AVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXX-----TVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
            AV Y   E   L+D GVFWVDFAS+ Q+F++V MNWNP++F FR +MHLRWPV +GPKNDSFN+GDNPQLSLSVKS A  A SG S S XXXXXXXXXXX       TVWVLL+RHVT IESDP EGDFLTMHVY  TQGKRVYYP+ PMF GIYTNNP+TLVR+
Sbjct:   31 AVKYD-LETAMLKDNGVFWVDFASIFQYFKNVFMNWNPSVFSFRFVMHLRWPVNMGPKNDSFNLGDNPQLSLSVKSSAKNAVSGASGSXXXXXXXXXXXXVARTQSPTVWVLLSRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRF 194          
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A835Z8N9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N9_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.820e-38
Identity = 73/165 (44.24%), Postives = 105/165 (63.64%), Query Frame = 1
Query:    1 AIFYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
            A   RAV Y       L+D GVFW+D+ S+ + F++V +NWNP +F++R+++H  WPV  GP  D++N+G NPQ +L+V  G   A    S+SA              VWVLL+RHV  +E+D   GD+LT+HV+ ++ G RV+YP  PM+ G YTNNP+TLVR+
Sbjct:  129 AAMKRAVGYD-LAAAQLEDNGVFWIDWPSICRFFKNVFINWNPALFKYRSVLHGEWPVTQGPPMDTYNLGLNPQYTLTVPYGNASA----SASAKPPI----------VWVLLSRHVMELETDEASGDYLTLHVFDNSDGARVWYPSTPMYKGTYTNNPHTLVRF 278          
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A7S2R4L7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4L7_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.800e-36
Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 1
Query:   55 DKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
            D GVFW+DF S+ ++FR   +NWNPN+F+ R ++H  WP+ +GPKND +  G NPQ ++ V           +S+              TVWVLL+RHVT  E D   GDFLT+HV+ + QGKRV+YP  PM  G+YTNNP+ L+R+
Sbjct:  391 DNGVFWIDFTSMRRYFRSTHLNWNPNLFQHRKVLHYHWPLAVGPKNDQYTYGSNPQWTVVVDLPPA------ASTNSTGTPISKSSVSPTVWVLLSRHVTKKEDDEHPGDFLTVHVF-ENQGKRVFYPHAPMVKGVYTNNPHNLLRF 530          
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A7R9YFX4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFX4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.280e-35
Identity = 69/165 (41.82%), Postives = 94/165 (56.97%), Query Frame = 1
Query:   13 RAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEI-GPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIES---DPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
            R + Y P     L   G+FWVDF +V  +F  V +NWNPN+F+ + + H  WP    GP+ND FNVG+NPQ +L V  G T                        VW+LL+RHVT  E+   D +EGDFL +HVYT  +G R++YPEK +  G+Y+NNP+ L R+
Sbjct:  263 RLLQYQPDIARQLDRMGIFWVDFETVQHYFNSVHLNWNPNLFQHQAVTHANWPTTSKGPRNDQFNVGENPQFTLEVTRGGT------------------------VWILLSRHVTKREAEIKDESEGDFLALHVYTKRKGARIFYPEKAVIRGLYSNNPHNLTRF 403          
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A8J5IZA9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IZA9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.280e-33
Identity = 73/164 (44.51%), Postives = 100/164 (60.98%), Query Frame = 1
Query:    7 FYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSV-KSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDP--TEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLV 489
            FY +     +E    QD G+FW+DF SV Q+F  + MNWNP +F ++ + H  WPVE+GP NDS  +G NPQ SL+  K+G++R   G +++A             TVWVLL+RHV+ IE D   +   FLT+HVY  T GKRV+Y    +  G Y+NNP+TLV
Sbjct:  540 FYASEETESEEAGGQQDDGLFWIDFESVKQYFESLYMNWNPELFPYKGVCHEHWPVELGPVNDSLTLGFNPQYSLTFCKTGSSRE--GATAAAGSC----------TVWVLLSRHVSTIERDTDYSNQQFLTLHVYRGTPGKRVFYNHCAVSRGTYSNNPHTLV 691          
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: W2QU61_PHYPN (Calpain catalytic domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QU61_PHYPN)

HSP 1 Score: 138 bits (348), Expect = 1.950e-33
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    7 FYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDP--TEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLV 489
            FY +     +E    +D G+FW+DF SV Q+F  + MNWNP +F ++ + H  WPVE+GP NDS  +G NPQ SL+       A S E ++A             TVWVLL+RHV+ IE D   +   FLT+HVY  T GKRV+Y  + +  G+Y+NNP+TLV
Sbjct:  543 FYASEATESEEASGQKDDGLFWIDFESVKQYFESLYMNWNPELFPYKGVFHEHWPVELGPVNDSLTLGFNPQYSLTF---CKTAPSQEGATAAAGSC--------TVWVLLSRHVSLIERDTDYSNQQFLTLHVYRGTPGKRVFYNHRAVSRGMYSNNPHTLV 694          
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A7S1UDV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDV7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.490e-33
Identity = 67/165 (40.61%), Postives = 93/165 (56.36%), Query Frame = 1
Query:   13 RAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVE-IGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESD---PTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
            RA+N+ P     L   GVFWVDF +V ++F  + +NWNP +F  +   H  WPV   GP+ND +NVG+NPQ +L V  GAT                        VW+LL+RHVT  E D     +GDFL++HVY    G+R++YP++P   G Y+NNP+ L R+
Sbjct:  354 RALNFEPDMARQLDQMGVFWVDFETVQRYFSSIHLNWNPALFANQATTHAHWPVSSAGPRNDRYNVGENPQFTLEVMRGAT------------------------VWILLSRHVTKREKDIQSEDDGDFLSLHVYAHRGGRRIFYPDQPAVKGYYSNNPHNLTRF 494          
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A0P1AK40_PLAHL (Calpain-like protease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AK40_PLAHL)

HSP 1 Score: 137 bits (346), Expect = 3.590e-33
Identity = 66/163 (40.49%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    7 FYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIES--DPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLV 489
            FY   +  P E  +  D+G+FW+DF SV ++F  + +NWNP +F ++ + H  W  ++GP NDSF +G NPQ SLS +  AT  D   + +              TVW+LL+RHV+AIE   D +   FLT+H+Y  T GKRV+Y  + +  G Y+NNP+TL+
Sbjct:  544 FYALKSTMPNEANSQPDEGLFWMDFESVKKYFESLYLNWNPELFPYKRVYHEHWSADVGPVNDSFTLGFNPQYSLSFRKIATSQDKATTFATSC-----------TVWILLSRHVSAIEREIDSSTQQFLTLHIYRGTPGKRVFYNHRAVSRGTYSNNPHTLM 695          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU46_ECTSI2.060e-8263.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSF9_9PHAE1.140e-6370.30Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LU44_ECTSI1.460e-6371.52Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835Z8N9_9STRA3.820e-3844.24Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S2R4L7_9STRA2.800e-3645.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9YFX4_9STRA2.280e-3541.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J5IZA9_9STRA1.280e-3344.51Calpain catalytic domain-containing protein n=1 Ta... [more]
W2QU61_PHYPN1.950e-3343.56Calpain catalytic domain-containing protein n=10 T... [more]
A0A7S1UDV7_9STRA2.490e-3340.61Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0P1AK40_PLAHL3.590e-3340.49Calpain-like protease n=1 Tax=Plasmopara halstedii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13839contigEcto-sp13_S_contig13839:2279..4517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score182.6
Seed ortholog evalue1.3e-43
Seed eggNOG ortholog2880.D8LU44
Model size788
KEGG koko:K08582
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Cds size408
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13839.3001.1prot_Ecto-sp13_S_contig13839.3001.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13839 2393..4220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.1691663-UTR-Ecto-sp13_S_contig13839:2278..23921681462738.1691663-UTR-Ecto-sp13_S_contig13839:2278..2392Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13839 2279..2392 +
1681462738.2154374-UTR-Ecto-sp13_S_contig13839:4220..42221681462738.2154374-UTR-Ecto-sp13_S_contig13839:4220..4222Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13839 4221..4222 +
1681462738.2252922-UTR-Ecto-sp13_S_contig13839:4253..45171681462738.2252922-UTR-Ecto-sp13_S_contig13839:4253..4517Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13839 4254..4517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.183627-CDS-Ecto-sp13_S_contig13839:2392..24241681462738.183627-CDS-Ecto-sp13_S_contig13839:2392..2424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13839 2393..2424 +
1681462738.1954153-CDS-Ecto-sp13_S_contig13839:3267..34651681462738.1954153-CDS-Ecto-sp13_S_contig13839:3267..3465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13839 3268..3465 +
1681462738.2051313-CDS-Ecto-sp13_S_contig13839:4042..42201681462738.2051313-CDS-Ecto-sp13_S_contig13839:4042..4220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13839 4043..4220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13839.3001.1

>prot_Ecto-sp13_S_contig13839.3001.1 ID=prot_Ecto-sp13_S_contig13839.3001.1|Name=mRNA_Ecto-sp13_S_contig13839.3001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADS
GESSSATDAAAGGAAAAAATVWVLLTRHVTAIESDPTEGDFLTMHVYTDT
QGKRVYYPEKPMFTGIYTNNPNTLVRYAHNQFHQV*
back to top

mRNA from alignment at Ecto-sp13_S_contig13839:2279..4517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13839.3001.1 ID=mRNA_Ecto-sp13_S_contig13839.3001.1|Name=mRNA_Ecto-sp13_S_contig13839.3001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13839:2279..4517+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATTTTTTACAGGGCCGTCAACTACCCCCCCCAGGAGAGGCTAACCCT GCAGGACAAAGGCGTCTTTTGGGTGGACTTTGCTTCCGTCGTACAGCACT TCAGACACGTCGTCATGAACTGGAATCCCAACATCTTCCGCTTCAGGTGA GTTTTGGACACCCTATCTAACCTCAGCAACAACGTGAACCCTATACCCCT GGCCCGCCGAGTCCATCAAGCGGGACCCCAAAAGATAGAAGATTCTGGTT TCTTGCTGCTGCTGTAGCCGTCATACAATCATTGAGGCCAGCCCTATTCA CACGTACGTCTTCGTGACGACGAACGTTCAACACGATAGCGACGTTTCTT TTGGCTCACCTCCCACAACAACCTGTACGTCACGCGCTTTCTTTTGGGTC TTGCGACGTGGCTTTTCACGCCGCGTACGAAAAAATTAGACTTCTATCTC TACTGCCATGTACCTTAACAGCCAAGTGCTCGTTAATCTGAATGTCAGTC ACAACATGTTCGTTTTTTTTCCCAATGCTAACCCTGCTGGGCCTAGCCCA ATATCCTCACAAAGTTGCACCCCAAGTTCTTCAGATTTTGGTGATCTGGG TACCCTGGTCAAAATAACTTCATGTTGACCTTCATCTCAACGTTTACTCC GTGGCAAGTCCAATATCCATGAGGTTGAACTCCGATATCTTCCGATTCAG GAGGTTTGAGTGCGCATACCTTATCAATATCCTCAGCCCTGGCTCCATGA CAATAGGAGCGGCAACCGTAGCCCTCTAAACTTGAGAGGTTTTGAGGTAC ACCGAATTATAGATACATTGCGTGTATGCTTTGCATGCTATCGTTAAGTT GGCGGTGCACTTGCAGCAGCTGGCTAAAAAAGACTTGGCCGATACACGTT TGCTCCCCTACCCTCGATCCCAGCCATTTTATTTCCCCCTGAACTCGAAA CGTGTTGCGTGCGTTCTGCTCGCTGGTATGATACAACAGGAACTTGATGC ACCTGCGGTGGCCCGTGGAGATCGGTCCCAAGAACGACTCCTTCAACGTC GGGGACAACCCGCAGCTTTCGCTCTCCGTCAAGAGCGGCGCGACACGTGC CGATTCGGGAGAATCTAGCTCGGCGACAGATGCCGCGGCGGGAGGGGCGG CAGCGGCGGCGGCCACGGTGTGGGTGCTGTTAACCAGGTGAACGTGGACA CCATCATGAATCACGTGCAAGTTCTTCACGTTGGTTTGTCAAATTTTATT TCGGTTCTGCATGGTTTCAACTACTTCAAAGTAGTAGTTTTCTTTGCTGG AAATTGCGACAAAAAATTCGCTCCTCTGGGGTAGAATTACTTGCAGCAGA GAACCAAAAAGTATGGCACTTCAATGTCGTTTGCAGTGTTGGTGTGCAGG AATCACTTGCGTCATGCTTGTTTTTGCCATTCACCTTTGTTCGCTTGTTG GTCGCGTCGTTTTGGGGACCGTCTTGGGACAGGACCATTTCAGATCTGGC GCGTGCTGTGTGCGATTCAACTAACTTCTTGTTTTGATTCTACGTACAAG GAGCAATGTTTTTGCGATCGATGTTTTTGCACTACTTTCGCCAGTGACCC ACAAGACATTCCTCCAGTTTTCAAGTGCAACGCAACACCGGTTGATTTGG CTCCCACGTGGTTTTGTTGAGGATTTACTAAGGTTGACAAGACAGACCCT ATCTAGTATTAATGGAAGAGTAGTGAAAATGATCTTGTATCCGTCTCTTC TCCTTATTTTGCAGACACGTGACGGCGATCGAGTCCGACCCGACAGAGGG CGACTTTCTGACGATGCACGTCTACACGGACACGCAGGGGAAGCGGGTCT ACTACCCGGAAAAACCAATGTTTACGGGGATTTATACCAACAACCCTAAC ACGCTCGTCAGGTATGCGCACAACCAATTCCATCAGGTTTGATCGTGCCA TCAAGTAGCACCAACAGTCAGTTAGGTATAACCGTAACCACACCTTGCCG TAACTTTCTCCTATCTGCGACAAACTAACTTTGCACGTTCGTCTGTTGAT ATCCCTCCGTAGCACACCGTGTATTCCGTCCGTCGAAACGACTTCATCCA TCGGGGTGGATCATTTTCTTTTGAATTTTCCATGATTTGATGATGCAGAT TCGACTTGCCGGAGAATACGGGTACCACGGACAAGTGGGTCGATTACACG CTCGTGGTCAGCCAGTACGAGAAGAAGAGAGAAGTCAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13839:2279..4517+

>mRNA_Ecto-sp13_S_contig13839.3001.1 ID=mRNA_Ecto-sp13_S_contig13839.3001.1|Name=mRNA_Ecto-sp13_S_contig13839.3001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13839:2279..4517+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTGGAATCCCAACATCTTCCGCTTCAGGAACTTGATGCACCTGCG
GTGGCCCGTGGAGATCGGTCCCAAGAACGACTCCTTCAACGTCGGGGACA
ACCCGCAGCTTTCGCTCTCCGTCAAGAGCGGCGCGACACGTGCCGATTCG
GGAGAATCTAGCTCGGCGACAGATGCCGCGGCGGGAGGGGCGGCAGCGGC
GGCGGCCACGGTGTGGGTGCTGTTAACCAGACACGTGACGGCGATCGAGT
CCGACCCGACAGAGGGCGACTTTCTGACGATGCACGTCTACACGGACACG
CAGGGGAAGCGGGTCTACTACCCGGAAAAACCAATGTTTACGGGGATTTA
TACCAACAACCCTAACACGCTCGTCAGGTATGCGCACAACCAATTCCATC
AGGTTTGA
back to top