mRNA_Ecto-sp13_S_contig13839.3001.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: D8LU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU46_ECTSI) HSP 1 Score: 264 bits (674), Expect = 2.060e-82 Identity = 144/226 (63.72%), Postives = 157/226 (69.47%), Query Frame = 1
Query: 1 AIFYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRYAHNQFH-----QV*SYNRNHTLP*LSPICDKLTLHVRLLISLRSTPCIPSVETT-SSIGVD 660
A+F AVNYPPQER TLQDKGVFWVDFASVVQ+FRHV +NWNPN FRFRNL HLRWPVEIGPKNDSFN+GDNPQLSLSVKSGAT A SGES SA TVWVLLTRHVT IESDP EGDFLTMHVY DTQGKRVYYPE G P TL R + H ++ +R P + + L H I++RS PCIPSVE T S+IGVD
Sbjct: 19 ALFDMAVNYPPQERQTLQDKGVFWVDFASVVQYFRHVFLNWNPNTFRFRNLTHLRWPVEIGPKNDSFNLGDNPQLSLSVKSGATSAGSGESGSAAA-----------TVWVLLTRHVTVIESDPAEGDFLTMHVYADTQGKRVYYPENQCLGGF---TPTTLTRSS-GMTHTTKPLRINVPSRVQVPPGVPVLRRVLPYHRYRAITVRSAPCIPSVEPTPSTIGVD 229
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A6H5KSF9_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF9_9PHAE) HSP 1 Score: 212 bits (540), Expect = 1.140e-63 Identity = 116/165 (70.30%), Postives = 130/165 (78.79%), Query Frame = 1
Query: 16 AVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXX-----TVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
AV Y E L+D GVFWVDFAS+ Q+F++V MNWNP++F FR +MHLRWPV +GPKNDSFN+GDNPQLSLSVKS A A SG XXXXXXXXXXX TVWVLL+RHVT IESDP EGDFLTMHVY TQGKRVYYP+ PMF GIYTNNP+TLVR+
Sbjct: 71 AVKYD-LETAMLKDNGVFWVDFASIFQYFKNVFMNWNPSVFSFRFVMHLRWPVNMGPKNDSFNLGDNPQLSLSVKSSAKSAVSGAXXXXXXXXXXXXXXXVARTQSPTVWVLLSRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRF 234
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: D8LU44_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU44_ECTSI) HSP 1 Score: 217 bits (552), Expect = 1.460e-63 Identity = 118/165 (71.52%), Postives = 132/165 (80.00%), Query Frame = 1
Query: 16 AVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXX-----TVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
AV Y E L+D GVFWVDFAS+ Q+F++V MNWNP++F FR +MHLRWPV +GPKNDSFN+GDNPQLSLSVKS A A SG S S XXXXXXXXXXX TVWVLL+RHVT IESDP EGDFLTMHVY TQGKRVYYP+ PMF GIYTNNP+TLVR+
Sbjct: 31 AVKYD-LETAMLKDNGVFWVDFASIFQYFKNVFMNWNPSVFSFRFVMHLRWPVNMGPKNDSFNLGDNPQLSLSVKSSAKNAVSGASGSXXXXXXXXXXXXVARTQSPTVWVLLSRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRF 194
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A835Z8N9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N9_9STRA) HSP 1 Score: 150 bits (379), Expect = 3.820e-38 Identity = 73/165 (44.24%), Postives = 105/165 (63.64%), Query Frame = 1
Query: 1 AIFYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
A RAV Y L+D GVFW+D+ S+ + F++V +NWNP +F++R+++H WPV GP D++N+G NPQ +L+V G A S+SA VWVLL+RHV +E+D GD+LT+HV+ ++ G RV+YP PM+ G YTNNP+TLVR+
Sbjct: 129 AAMKRAVGYD-LAAAQLEDNGVFWIDWPSICRFFKNVFINWNPALFKYRSVLHGEWPVTQGPPMDTYNLGLNPQYTLTVPYGNASA----SASAKPPI----------VWVLLSRHVMELETDEASGDYLTLHVFDNSDGARVWYPSTPMYKGTYTNNPHTLVRF 278
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A7S2R4L7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4L7_9STRA) HSP 1 Score: 146 bits (369), Expect = 2.800e-36 Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 1
Query: 55 DKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
D GVFW+DF S+ ++FR +NWNPN+F+ R ++H WP+ +GPKND + G NPQ ++ V +S+ TVWVLL+RHVT E D GDFLT+HV+ + QGKRV+YP PM G+YTNNP+ L+R+
Sbjct: 391 DNGVFWIDFTSMRRYFRSTHLNWNPNLFQHRKVLHYHWPLAVGPKNDQYTYGSNPQWTVVVDLPPA------ASTNSTGTPISKSSVSPTVWVLLSRHVTKKEDDEHPGDFLTVHVF-ENQGKRVFYPHAPMVKGVYTNNPHNLLRF 530
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A7R9YFX4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFX4_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.280e-35 Identity = 69/165 (41.82%), Postives = 94/165 (56.97%), Query Frame = 1
Query: 13 RAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEI-GPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIES---DPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
R + Y P L G+FWVDF +V +F V +NWNPN+F+ + + H WP GP+ND FNVG+NPQ +L V G T VW+LL+RHVT E+ D +EGDFL +HVYT +G R++YPEK + G+Y+NNP+ L R+
Sbjct: 263 RLLQYQPDIARQLDRMGIFWVDFETVQHYFNSVHLNWNPNLFQHQAVTHANWPTTSKGPRNDQFNVGENPQFTLEVTRGGT------------------------VWILLSRHVTKREAEIKDESEGDFLALHVYTKRKGARIFYPEKAVIRGLYSNNPHNLTRF 403
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A8J5IZA9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IZA9_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.280e-33 Identity = 73/164 (44.51%), Postives = 100/164 (60.98%), Query Frame = 1
Query: 7 FYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSV-KSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDP--TEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLV 489
FY + +E QD G+FW+DF SV Q+F + MNWNP +F ++ + H WPVE+GP NDS +G NPQ SL+ K+G++R G +++A TVWVLL+RHV+ IE D + FLT+HVY T GKRV+Y + G Y+NNP+TLV
Sbjct: 540 FYASEETESEEAGGQQDDGLFWIDFESVKQYFESLYMNWNPELFPYKGVCHEHWPVELGPVNDSLTLGFNPQYSLTFCKTGSSRE--GATAAAGSC----------TVWVLLSRHVSTIERDTDYSNQQFLTLHVYRGTPGKRVFYNHCAVSRGTYSNNPHTLV 691
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: W2QU61_PHYPN (Calpain catalytic domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QU61_PHYPN) HSP 1 Score: 138 bits (348), Expect = 1.950e-33 Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 1
Query: 7 FYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESDP--TEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLV 489
FY + +E +D G+FW+DF SV Q+F + MNWNP +F ++ + H WPVE+GP NDS +G NPQ SL+ A S E ++A TVWVLL+RHV+ IE D + FLT+HVY T GKRV+Y + + G+Y+NNP+TLV
Sbjct: 543 FYASEATESEEASGQKDDGLFWIDFESVKQYFESLYMNWNPELFPYKGVFHEHWPVELGPVNDSLTLGFNPQYSLTF---CKTAPSQEGATAAAGSC--------TVWVLLSRHVSLIERDTDYSNQQFLTLHVYRGTPGKRVFYNHRAVSRGMYSNNPHTLV 694
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A7S1UDV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDV7_9STRA) HSP 1 Score: 137 bits (346), Expect = 2.490e-33 Identity = 67/165 (40.61%), Postives = 93/165 (56.36%), Query Frame = 1
Query: 13 RAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVE-IGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIESD---PTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLVRY 495
RA+N+ P L GVFWVDF +V ++F + +NWNP +F + H WPV GP+ND +NVG+NPQ +L V GAT VW+LL+RHVT E D +GDFL++HVY G+R++YP++P G Y+NNP+ L R+
Sbjct: 354 RALNFEPDMARQLDQMGVFWVDFETVQRYFSSIHLNWNPALFANQATTHAHWPVSSAGPRNDRYNVGENPQFTLEVMRGAT------------------------VWILLSRHVTKREKDIQSEDDGDFLSLHVYAHRGGRRIFYPDQPAVKGYYSNNPHNLTRF 494
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Match: A0A0P1AK40_PLAHL (Calpain-like protease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AK40_PLAHL) HSP 1 Score: 137 bits (346), Expect = 3.590e-33 Identity = 66/163 (40.49%), Postives = 97/163 (59.51%), Query Frame = 1
Query: 7 FYRAVNYPPQERLTLQDKGVFWVDFASVVQHFRHVVMNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSGESSSAXXXXXXXXXXXXXTVWVLLTRHVTAIES--DPTEGDFLTMHVYTDTQGKRVYYPEKPMFTGIYTNNPNTLV 489
FY + P E + D+G+FW+DF SV ++F + +NWNP +F ++ + H W ++GP NDSF +G NPQ SLS + AT D + + TVW+LL+RHV+AIE D + FLT+H+Y T GKRV+Y + + G Y+NNP+TL+
Sbjct: 544 FYALKSTMPNEANSQPDEGLFWMDFESVKKYFESLYLNWNPELFPYKRVYHEHWSADVGPVNDSFTLGFNPQYSLSFRKIATSQDKATTFATSC-----------TVWILLSRHVSAIEREIDSSTQQFLTLHIYRGTPGKRVFYNHRAVSRGTYSNNPHTLM 695 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13839.3001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13839.3001.1 >prot_Ecto-sp13_S_contig13839.3001.1 ID=prot_Ecto-sp13_S_contig13839.3001.1|Name=mRNA_Ecto-sp13_S_contig13839.3001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp MNWNPNIFRFRNLMHLRWPVEIGPKNDSFNVGDNPQLSLSVKSGATRADSback to top mRNA from alignment at Ecto-sp13_S_contig13839:2279..4517+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13839.3001.1 ID=mRNA_Ecto-sp13_S_contig13839.3001.1|Name=mRNA_Ecto-sp13_S_contig13839.3001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13839:2279..4517+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13839:2279..4517+ >mRNA_Ecto-sp13_S_contig13839.3001.1 ID=mRNA_Ecto-sp13_S_contig13839.3001.1|Name=mRNA_Ecto-sp13_S_contig13839.3001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13839:2279..4517+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |