mRNA_Ecto-sp13_S_contig13831.2997.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13831.2997.1 vs. uniprot
Match: D8LIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG0_ECTSI) HSP 1 Score: 1113 bits (2878), Expect = 0.000e+0 Identity = 648/694 (93.37%), Postives = 659/694 (94.96%), Query Frame = 1
Query: 1 QASVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEEQXXXXQLQQPGLLHPSTPMMPALVLTSPHRQLSHETAAAQLSGDHRYGYGPSGKTVRRMPSDLQGNFAAVDIDGSGDVGMMPFIDGGFGGRGAGATDGRAGIATTVAEDMVLEGDCVDSAAYKRRRVMPGEGGGDPFDPSAGSFHFAQEGGDGEGHGHMPLLPPRHPGSGGTVDVLGHYDSSKAFGRRASGIRGPGPGKSLGGGTDGDGDFEGGSLGLTRDLHNMSLSRLSVPSFPDDGGAGGALADDLHLGRVPSEGIMDLSSSMGSFNLDMVGLDGGGGAVKSGKGLGSFITGPITTDIDEDGGXXXVGGNSLGNITFPAAXXXXXXXXXXXXTGKKRSFSSATSRPPRLASFTTYSASLCRTSSSSSMPRQRFSXXXXXXXXXXXXXEEGSIGQCGSDLGHDIIASAEDFMNEEGREDICGNILSVDAILGDIGSNAVGTLSTCQDSNTKSVGEGAASLDRPQIHAGTAGEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIITSLDEHKKSITPCTLADFYETGGTTPPLPA 2082
+ SVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEEQ QLQQPG LHPSTPMMPALVLTSPHRQLSHETAAAQLSGDHRYGYGP+GKTVRR+PSDLQGNFAAV IDGSGDVGMMPFIDGGFGGRGAGATDGRAGIATTVAEDMVLEGDCVDSAAYKRRR+MPG+GGGDPFDPSAGSF FAQEGGDGEGHGHMPLLPPRH GSGGTVD LGHYDSSKAFG+RA GIRG GPGKSLGGGTDGD DFEGGSLGLTRDLHNMSLSRLS+PSFPDDGGAGGALADDL+LGRVPSEGIMDLSSSMGSFNLDMVGLDGGGG VKS KGLGSFITGPITTD D XXX GNSLGNITFPAAXXXXXXXXXXXXTGKKRSFSSATSRP RLASFTTYS SLCRTSSSSSMPRQRFS XXXXXXXXXX EEGSIGQCGSDLGHDI+ASAEDFMNEEGREDICGNILSVDAILGDIGSNAVG LSTC+DSN KSVGEGAASLD+P IHA AGEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DI TSLDEHKKSITP TLADFYETGGTTPPLPA
Sbjct: 321 ETSVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEEQEQEQQLQQPGRLHPSTPMMPALVLTSPHRQLSHETAAAQLSGDHRYGYGPAGKTVRRLPSDLQGNFAAVGIDGSGDVGMMPFIDGGFGGRGAGATDGRAGIATTVAEDMVLEGDCVDSAAYKRRRMMPGQGGGDPFDPSAGSFCFAQEGGDGEGHGHMPLLPPRHSGSGGTVDALGHYDSSKAFGQRALGIRGTGPGKSLGGGTDGDEDFEGGSLGLTRDLHNMSLSRLSLPSFPDDGGAGGALADDLNLGRVPSEGIMDLSSSMGSFNLDMVGLDGGGGGVKSVKGLGSFITGPITTDTDXXXXXXXXXGNSLGNITFPAAXXXXXXXXXXXXTGKKRSFSSATSRPRRLASFTTYSTSLCRTSSSSSMPRQRFSGXXXXXXXXXX--EEGSIGQCGSDLGHDIVASAEDFMNEEGREDICGNILSVDAILGDIGSNAVGKLSTCKDSNAKSVGEGAASLDKPPIHAAIAGEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDISTSLDEHKKSITPDTLADFYETGGTTPPLPA 1012
BLAST of mRNA_Ecto-sp13_S_contig13831.2997.1 vs. uniprot
Match: A0A6H5JAW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW1_9PHAE) HSP 1 Score: 1078 bits (2788), Expect = 0.000e+0 Identity = 633/696 (90.95%), Postives = 646/696 (92.82%), Query Frame = 1
Query: 1 QASVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEEQXXXXQLQQPGLLHPSTPMMPALVLTSPHRQLSHETAAAQLSGDHRYGYGPSGKTVRRMPSDLQGNFAAVDIDGSGDVGMMPFIDGGFGGRGAGATDGRAGIATTVAEDMVLEGDCVDSAAYKRRRVMPGEGGGDPFDPSAGSFHFAQEGGDGEGHGHMPLLPPRHPGSGGTVDVLGHYDSSKAFGRRASGIRGPGPGKSLGGGTDGDGDFEGGSLGLTRDLHNMSLSRLSVPSFPDDGGAGGALADDLHLGRVPSEGIMDLSSSMGSFNLDMVGLDGGGGAVKSGKGLGSFITGPITTDIDEDGGXXXVGGNSLGNITFPAAXXXXXXXXXXXX--TGKKRSFSSATSRPPRLASFTTYSASLCRTSSSSSMPRQRFSXXXXXXXXXXXXXEEGSIGQCGSDLGHDIIASAEDFMNEEGREDICGNILSVDAILGDIGSNAVGTLSTCQDSNTKSVGEGAASLDRPQIHAGTAGEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIITSLDEHKKSITPCTLADFYETGGTTPPLPA 2082
Q SVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEEQXXXXQLQQPGLLHPSTPMMPALVL+S HRQLSHETAAAQ SGDHRYG GP+G+TVRRMPSDLQGNFAAV IDGSGDVG+MPFIDGGFGGRGAGATDGRAGIATTVAE++VLEGDCVDSAAYKRRR MPGE GDPFDPSAGSF FAQ GGDGEGHGH LLPPRHPGSGGTVD LGHYDSS+AFG+RA GIRG GPGKSLGGGTD DGDFEG SLGLTRDLHNMSLSRLSVPSFPDDGGAGGALADDLHLG VPSEGIMDLSSSMGSFNLDMVGLDGGGGAV SGKGLGSFI PITTDIDEDG XXXVGGNSLG+ITFPAA XXXXXXXX TGKKRSFSSATSRPPRLASF TYSASLCRTSSSSSMPRQRF XXXXXXXXXX EEGSIGQCGSDLGHDI+ASAEDFMNEEGREDICGNILSVDAILGDIGSNAVG LS C+DSN KSVGEG ASLDRP+ HA TAGEGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +I TSLDE KKSITP TLADFYETG T PPLPA
Sbjct: 254 QTSVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEEQXXXXQLQQPGLLHPSTPMMPALVLSSSHRQLSHETAAAQPSGDHRYGCGPAGETVRRMPSDLQGNFAAVGIDGSGDVGIMPFIDGGFGGRGAGATDGRAGIATTVAENVVLEGDCVDSAAYKRRRTMPGESSGDPFDPSAGSFCFAQHGGDGEGHGHKSLLPPRHPGSGGTVDALGHYDSSQAFGQRAFGIRGTGPGKSLGGGTDRDGDFEGDSLGLTRDLHNMSLSRLSVPSFPDDGGAGGALADDLHLGSVPSEGIMDLSSSMGSFNLDMVGLDGGGGAVMSGKGLGSFIIRPITTDIDEDGXXXXVGGNSLGSITFPAAAVGGXXXXXXXXXXTGKKRSFSSATSRPPRLASFMTYSASLCRTSSSSSMPRQRFGXXXXXXXXXX---EEGSIGQCGSDLGHDIVASAEDFMNEEGREDICGNILSVDAILGDIGSNAVGKLSNCKDSNAKSVGEGVASLDRPRRHASTAGEGGWEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGNIHTSLDEQKKSITPETLADFYETGDT-PPLPA 945
BLAST of mRNA_Ecto-sp13_S_contig13831.2997.1 vs. uniprot
Match: A0A835ZC43_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC43_9STRA) HSP 1 Score: 119 bits (298), Expect = 4.900e-24 Identity = 62/131 (47.33%), Postives = 80/131 (61.07%), Query Frame = 1
Query: 25 LLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFY 417
LLC +L + LL MLG+R A L +P ++D P RALPLSWDA LIA+ LSFLL ATY RL +AVE A + A +WT LP PG+ P Y+ H C S+SNIC+++C++ T G FY
Sbjct: 410 LLCAALHSFLLVMLGRRADAAAALSRVPDVLDAC----PDAPRALPLSWDAALIAATLSFLLRLEATYARLHAAVERAQNATAATQWTCRLPAPGAPPAQYLGHACRSTSNICSVICKVGHHTQCGMHSFY 536 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13831.2997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13831.2997.1 >prot_Ecto-sp13_S_contig13831.2997.1 ID=prot_Ecto-sp13_S_contig13831.2997.1|Name=mRNA_Ecto-sp13_S_contig13831.2997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=695bp QASVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVback to top mRNA from alignment at Ecto-sp13_S_contig13831:2277..4361- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13831.2997.1 ID=mRNA_Ecto-sp13_S_contig13831.2997.1|Name=mRNA_Ecto-sp13_S_contig13831.2997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13831:2277..4361- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13831:2277..4361- >mRNA_Ecto-sp13_S_contig13831.2997.1 ID=mRNA_Ecto-sp13_S_contig13831.2997.1|Name=mRNA_Ecto-sp13_S_contig13831.2997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13831:2277..4361- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |