mRNA_Ecto-sp13_S_contig13825.2995.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13825.2995.1
Unique NamemRNA_Ecto-sp13_S_contig13825.2995.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: D7FXU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU1_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.210e-26
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 TLEMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFELA 162
            TLEMTAQPGSYL+KTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFELA
Sbjct:  944 TLEMTAQPGSYLRKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFELA 997
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: A0A6H5LB88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB88_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.210e-26
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 TLEMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFELA 162
            TLEMTAQPGSYL+KTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFELA
Sbjct:  868 TLEMTAQPGSYLRKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFELA 921
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: A0A835Z961_9STRA (ATP-grasp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z961_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-13
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 LEMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDS--GMFEL 159
            +EMTAQPGSY+  TVDCFTRPGAVQLV+ED E L  DY R+R LE    G+FEL
Sbjct:  933 MEMTAQPGSYVYPTVDCFTRPGAVQLVHEDGEALAEDYERIRALEQEQGGLFEL 986
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: A0A7S1XUG5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUG5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.190e-13
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    7 EMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFEL 159
            E+  QPGS + KT+DCFTRPGAVQL + D EQ+  DY R+RELE  G+F++
Sbjct:   92 ELVVQPGSQMVKTIDCFTRPGAVQLTHPDAEQVARDYRRIRELEREGLFKM 142
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: A0A7S3HD13_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HD13_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.690e-12
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 LEMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFEL 159
            +EM  QPGS L +TVDCFTRPG+VQLVN +  QL  DY  +R LE  GMFEL
Sbjct:  922 MEMLTQPGSTLHRTVDCFTRPGSVQLVNANAHQLHTDYQIIRSLEKGGMFEL 973
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: A0A7S0XE07_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE07_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.560e-10
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 LEMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFELA 162
            +EM  QPG+ +  T+DCFTRPG+VQLVNED  QL  DY  +R LE  G+F L+
Sbjct:  902 IEMLTQPGATIYPTIDCFTRPGSVQLVNEDLNQLEEDYNAIRLLEKDGLFLLS 954
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: A0A7R9YF27_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF27_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.880e-10
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    7 EMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMF 153
            EM  QPG+ + KT+DCF+RPG+VQL +ED   +  DY R+RELE  G+F
Sbjct:  274 EMVVQPGASIMKTIDCFSRPGSVQLTHEDPSVVARDYERIRELEQEGLF 322
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: A0A482T3N5_9ARCH (LAL_C2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3N5_9ARCH)

HSP 1 Score: 60.1 bits (144), Expect = 2.000e-9
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 LEMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFEL 159
            LEM  QPG+ ++ T+DCFTRPG+VQ+VN+  + L  DY  +R+LE  G+  L
Sbjct:  185 LEMLTQPGASIRPTIDCFTRPGSVQMVNKSADALQRDYDAIRKLEHDGLLVL 236
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: A0A7R9YE89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE89_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.630e-9
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    4 LEMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADY--LRVRELEDSGMFELA 162
            LEM  +PG ++ KT+DCFTRPGA QL++ D E +  DY  LR  EL   G+F+L+
Sbjct:  502 LEMMVKPGDFIAKTIDCFTRPGAAQLLHTDAEVVAKDYEMLRALELPGGGLFDLS 556
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BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Match: A0A7S3JRM9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRM9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.650e-9
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 LEMTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSG 147
            +E+  QPGS LK T+DCFTRPGAVQL++ D   ++AD   +R+LE  G
Sbjct:  749 MELQVQPGSKLKPTIDCFTRPGAVQLIHPDPNVVLADCETIRQLESEG 796
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13825.2995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FXU1_ECTSI4.210e-2698.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LB88_9PHAE4.210e-2698.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z961_9STRA1.180e-1368.52ATP-grasp domain-containing protein n=1 Tax=Tribon... [more]
A0A7S1XUG5_9STRA3.190e-1358.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HD13_9STRA2.690e-1263.46Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0XE07_9STRA1.560e-1056.60Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
A0A7R9YF27_9STRA1.880e-1055.10Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A482T3N5_9ARCH2.000e-950.00LAL_C2 domain-containing protein n=1 Tax=archaeon ... [more]
A0A7R9YE89_9STRA6.630e-950.91Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3JRM9_9STRA6.650e-954.17Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13825contigEcto-sp13_S_contig13825:36..748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score103.6
Seed ortholog evalue2.8e-20
Seed eggNOG ortholog2880.D7FXU1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.ATP-grasp domain
EggNOG OGs2QUGS@2759,COG0439@1
Cds size153
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462737.7128222-UTR-Ecto-sp13_S_contig13825:35..441681462737.7128222-UTR-Ecto-sp13_S_contig13825:35..44Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13825 36..44 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462737.7223272-CDS-Ecto-sp13_S_contig13825:44..1571681462737.7223272-CDS-Ecto-sp13_S_contig13825:44..157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13825 45..157 +
1681462737.7306232-CDS-Ecto-sp13_S_contig13825:708..7481681462737.7306232-CDS-Ecto-sp13_S_contig13825:708..748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13825 709..748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13825.2995.1prot_Ecto-sp13_S_contig13825.2995.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13825 45..748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13825.2995.1

>prot_Ecto-sp13_S_contig13825.2995.1 ID=prot_Ecto-sp13_S_contig13825.2995.1|Name=mRNA_Ecto-sp13_S_contig13825.2995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MTAQPGSYLKKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFEL
A
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mRNA from alignment at Ecto-sp13_S_contig13825:36..748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13825.2995.1 ID=mRNA_Ecto-sp13_S_contig13825.2995.1|Name=mRNA_Ecto-sp13_S_contig13825.2995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=713bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13825:36..748+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTTGGAAATGACCGCACAGCCGGGGTCCTACCTGAAGAAGACGGTGGA
CTGCTTCACTAGGCCGGGGGCAGTTCAGCTCGTCAACGAGGATAAGGAGC
AGCTGATGGCCGACTATCTCAGGTATTCAACCCCCACTCCCTCGACTCAC
AGTCTTGAAGAGCCAAAACGGCGAGAAGGTTTTCCGTCGTGTCTTTACGC
ACGTATTTCGAAGCATGTTCTTTTTCACGTTATCTTCAAATCGAATGGAC
AGGCACAAATCGGCTTGAGTCGCCGCTTGTGGTCTGTGGCTGTCTGCCGT
ATATCCGTGAGCGTCTTTTTGGCCCGGCGCAGTCGTTTTCACCACCCCGC
CGCCGCACGAGCATAGAACATTCCACCGCAGGGCTCCGAGGGTGTGTCTA
TCTCACGGCATGCTCTCGCCACGCTGCACGACGGGCAAAGCCCCCCCTAC
CTGTAGAGTGGTCAATGGCCCAGCCGCAAAGGCCACGCAAAATACAAGTA
CCCCCCCCCCCCCCCGCCCCCCCCGAGCCCCCTCAAGCTGTTGAAGTAGG
CAATGGTCCAACCGCTAAGGCACGCAAAACATGAGTACCCCAGCCGAAGC
TCGATGATCATGATCCACCTTCGCCACACCACACCTTACCACACACGTTA
CCATCACGCCACACCTCCCGCAGGGTCCGCGAGCTGGAAGACTCCGGCAT
GTTCGAGCTCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13825:36..748+

>mRNA_Ecto-sp13_S_contig13825.2995.1 ID=mRNA_Ecto-sp13_S_contig13825.2995.1|Name=mRNA_Ecto-sp13_S_contig13825.2995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13825:36..748+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGCACAGCCGGGGTCCTACCTGAAGAAGACGGTGGACTGCTTCAC
TAGGCCGGGGGCAGTTCAGCTCGTCAACGAGGATAAGGAGCAGCTGATGG
CCGACTATCTCAGGGTCCGCGAGCTGGAAGACTCCGGCATGTTCGAGCTC
GCT
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