mRNA_Ecto-sp13_S_contig13811.2984.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13811.2984.1
Unique NamemRNA_Ecto-sp13_S_contig13811.2984.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13811.2984.1 vs. uniprot
Match: A0A6H5JE26_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE26_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 1.540e-69
Identity = 183/277 (66.06%), Postives = 189/277 (68.23%), Query Frame = 2 
Query:    5 YIPSQLGATTPTGGGNSGRGGEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GSGMHLPSPSQGAXXXXXXXXXXXVHGLYSTPRHRVAAQASGXXXXXXXXVGLHGYPQQAPMTGXXXXXXXXRQRGAPPARRGGHDGFYMLPRQPGAAPEGTHRIGGGEFYVRHQQHGATQEGVHGGVYIXXXXXXXXXXXXXXGGRRAGGVCISPEREGRASXXXXXXXXXXXXGDGAGAGVGGVRDDYVMVSPDRPPPVPQPHYGPYSSR 823
            Y+PSQ GATTPT GGNS RG EYXXXXXXXXXXXXX                             GSGMHLPSP QGA   XXXXXXXXV GLYSTPRH VAA ASG        VGLH Y QQAPMTG        +QRGAPPARRGGHD FYMLP+QPGAAP+GTHRIGGGE Y R     ATQEGV+GGVYI               GRRAGGVCISPE EG+A XXXXXXXXXXXX    GAGVGGVRDDYVMVSPDRPPPVPQP YGPYSSR
Sbjct:  688 YLPSQQGATTPTNGGNSVRGDEYXXXXXXXXXXXXXGSGEASGVDVSHLPLQQVRITSPSTSHSGGSGMHLPSPLQGAPARXXXXXXXXVDGLYSTPRHHVAALASGGGG-----VGLHAYTQQAPMTGGSGFGFPMQQRGAPPARRGGHDSFYMLPQQPGAAPKGTHRIGGGELYFRXXXXXATQEGVYGGVYIPRQPQGAAPEGVRGSGRRAGGVCISPELEGQAXXXXXXXXXXXXXX--VGAGVGGVRDDYVMVSPDRPPPVPQPDYGPYSSR 957
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BLAST of mRNA_Ecto-sp13_S_contig13811.2984.1 vs. uniprot
Match: D8LBM4_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM4_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 1.600e-59
Identity = 147/278 (52.88%), Postives = 152/278 (54.68%), Query Frame = 2 
Query:    5 YIPSQLGATTPTGGGNSGRGGEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSG----MHLPSPSQGAXXXXXXXXXXXVHGLYSTPRHRVAAQASGXXXXXXXXVGLHGYPQQAPMTGXXXXXXXXRQRGAPPARRGGHDGFYMLPRQPGAAPEGTHRIGGGEFYVRHQQHGATQEGVHGGVYIXXXXXXXXXXXXXXGGRRAGGVCISPEREGRASXXXXXXXXXXXXGDG-AGAGVGGVRDDYVMVSPDRPPPVPQPHYGPYSSR 823
            Y PSQ GATT T GGNSG GG +                                             MHLPSP QGA  XXXX     V GLYSTPRH VAA            VGLH Y QQAPMTG        +Q GAPPARRGGHDGFYMLP+QPGAAPEGTHRIGG + YVR +QHGAT     GGV I               G RA GVCISPEREGRAS              G AGAGVG VRDDYVMVSPDRPPPVPQPHYGPYSSR
Sbjct:  726 YSPSQQGATTRTSGGNSGPGGVHLPSRIPGAAPTSSGSGEASGVDVSHLPLQQVRITSPRASXXXXXXMHLPSPLQGAPAXXXXGDASGVDGLYSTPRHDVAALGRSPGGV----VGLHAYTQQAPMTGSGVGFPG-QQWGAPPARRGGHDGFYMLPQQPGAAPEGTHRIGGEKLYVRPRQHGATXXXXXGGVSISRQPQGVAPEGVRGVGSRARGVCISPEREGRASPVGRRGDGHRGSDGGVAGAGVGRVRDDYVMVSPDRPPPVPQPHYGPYSSR 998
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13811.2984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE26_9PHAE1.540e-6966.06SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LBM4_ECTSI1.600e-5952.88TPR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13811contigEcto-sp13_S_contig13811:983..2885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score233.4
Seed ortholog evalue9.6e-59
Seed eggNOG ortholog2880.D8LBM4
Model size1832
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Src homology 2 domains
EggNOG OGs2E8DT@1,2SEWF@2759
Ec32 ortholog descriptionSH2 and tetratricopeptide-like domain protein
Ec32 orthologEc-27_003420.1
Cds size630
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.805739-UTR-Ecto-sp13_S_contig13811:982..11781681462736.805739-UTR-Ecto-sp13_S_contig13811:982..1178Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13811 983..1178 +
1681462736.8375516-UTR-Ecto-sp13_S_contig13811:1823..21611681462736.8375516-UTR-Ecto-sp13_S_contig13811:1823..2161Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13811 1824..2161 +
1681462736.847376-UTR-Ecto-sp13_S_contig13811:2217..28851681462736.847376-UTR-Ecto-sp13_S_contig13811:2217..2885Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13811 2218..2885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.817822-CDS-Ecto-sp13_S_contig13811:1178..12901681462736.817822-CDS-Ecto-sp13_S_contig13811:1178..1290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13811 1179..1290 +
1681462736.827468-CDS-Ecto-sp13_S_contig13811:1305..18231681462736.827468-CDS-Ecto-sp13_S_contig13811:1305..1823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13811 1306..1823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13811.2984.1prot_Ecto-sp13_S_contig13811.2984.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13811 1179..1823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13811.2984.1

>prot_Ecto-sp13_S_contig13811.2984.1 ID=prot_Ecto-sp13_S_contig13811.2984.1|Name=mRNA_Ecto-sp13_S_contig13811.2984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MHLPSPSQGAPVSDGSGDASGVHGLYSTPRHRVAAQASGGGGGGGGGVGL
HGYPQQAPMTGGSGFGFPGRQRGAPPARRGGHDGFYMLPRQPGAAPEGTH
RIGGGEFYVRHQQHGATQEGVHGGVYIPRQPQGATPEGVRGGGRRAGGVC
ISPEREGRASPVGRRGDGHRGGGDGAGAGVGGVRDDYVMVSPDRPPPVPQ
PHYGPYSSR*
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mRNA from alignment at Ecto-sp13_S_contig13811:983..2885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13811.2984.1 ID=mRNA_Ecto-sp13_S_contig13811.2984.1|Name=mRNA_Ecto-sp13_S_contig13811.2984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13811:983..2885+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGTACATACCCTCGCAGCTAGGAGCGACCACACCGACTGGCGGCGGCA
ACAGTGGTCGCGGCGGCGAGTACTTGCCCTCGCGGATACCTGGGGCTGCA
CCGACTAGCAGCGGTAGCGGTGAAGCGAGCGGTGTCGATGCGCAGCAACA
GGTAAGTGTCACATCGCCGAGCGCCAGCAGCAGCGGTGGCAGCGGCATGC
ACTTACCCTCGCCGTCGCAAGGAGCGCCGGTTAGCGACGGTAGCGGTGAC
GCGAGTGGTGTCCATGGTCTGTACTCAACACCGCGACATCGCGTGGCGGC
ACAGGCTAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GTGTTGGTTTACATGGCTACCCTCAGCAAGCACCCATGACAGGCGGCAGC
GGTTTTGGTTTCCCCGGGCGGCAACGGGGAGCCCCGCCAGCAAGAAGAGG
CGGCCACGACGGCTTTTATATGCTACCCCGGCAGCCAGGGGCAGCGCCGG
AGGGGACCCATCGCATCGGTGGCGGAGAGTTCTACGTCCGCCACCAGCAG
CACGGGGCCACGCAGGAGGGGGTCCACGGTGGCGTGTATATACCCCGCCA
GCCGCAAGGGGCCACACCGGAGGGGGTCCGTGGCGGTGGCCGCAGGGCCG
GAGGCGTGTGTATCAGCCCGGAACGAGAAGGACGGGCCTCGCCGGTCGGG
AGGCGGGGCGATGGCCACCGCGGCGGCGGCGACGGTGCCGGTGCCGGTGT
TGGCGGGGTCAGGGACGACTACGTGATGGTGTCGCCGGATCGCCCGCCCC
CGGTTCCTCAGCCTCATTACGGTCCATACAGCAGCCGATGACAGGGCACT
CGAGAGTAGGTGTCAAAGACGACGAGATATACCGGCGGAGGGGGTGGAGT
GGCATTGGGGCTTGTTTCGGTAGAGGTCTTATTACTTTTTTTTAGCTCTA
GTGGAGGGTGCGCGCGCGTGGTGGGTGGGTTGTACTCTCTAACGCTTTCA
AGTGACCGGGGACGCGAGCAGTCGGAAGGGCGCTGGGGAGGCGGCGTACG
CTTGAAATCCCTGCGCGAAAACAGAGGGGCTGTGGGTCGGTCGCCGCACT
ACGAACACCGACTGCTGCACGGATTCGGTCTAGGAGGCGGTTTACATGAT
GTTCTGGCTACGTTTTTTTTTTTGTGAGCGCCATCCACGTCTTTTGTGTA
ATTTTGGGCTCCCTTGTCGGCCGTGTTCTATAAAGTTTTGTTTTCGCCAG
GCGTCCGTGTGCTGTTAATACATTATACATGAATCATTGTTTTTCTCGGC
GAAGGTAGCGTGGTTGCCTGTTATTGTTGTAGATTTTTCCGGCGCATTGG
TGGTAGGTTGGAACGCGCCTGCCGGCGGTTCCCCCCGTGTGCGTGTACGA
CGTTTGTTTTCGTTTGGGATTTTCGTTTTCGTTTGGGATTTTCGTTTTCG
TTTTCGTTTTCGTTTTCTTAGGTTTTTCGTGTTTGATGGACTTACTCGCA
GTAACAAGGTTTGTTTGTGTATGACAGGCCCCATAGTAGTGCGGGGCAAC
CTCCGCTTGTCGTGCGCTACCTTTTTGGATTTTGTGCTTGCCCTGCAAGC
ATCCATGTACTGTAGTAGGTGGCTGGTTCTTTCGCGGCTAACCGTGCATC
TTGGTGTGCTTGCCGGCCGGGAGGTAATCAGCTAAGTATACAGCGGCTGG
AAGAGGAAGACCAGGCGATTATTCTGTGAGGTCGATACGATGATGATAAA
TTTTCAGTATGAGAGAGGGGTTCGTTGCTCTACACCCGTAGCCCGTAGAG
TCGTCTGCGTTGACCTACTTCGTAACACCCACCTACATTATATAGATTGT
TTTGTGATTTGTTTTGCGGTCATCTGCCGTCGCCCAGGAGATAAATCGAG
AGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13811:983..2885+

>mRNA_Ecto-sp13_S_contig13811.2984.1 ID=mRNA_Ecto-sp13_S_contig13811.2984.1|Name=mRNA_Ecto-sp13_S_contig13811.2984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13811:983..2885+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTTACCCTCGCCGTCGCAAGGAGCGCCGGTTAGCGACGGTAGCGG
TGACGCGAGTGGTGTCCATGGTCTGTACTCAACACCGCGACATCGCGTGG
CGGCACAGGCTAGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGTTGGTTTA
CATGGCTACCCTCAGCAAGCACCCATGACAGGCGGCAGCGGTTTTGGTTT
CCCCGGGCGGCAACGGGGAGCCCCGCCAGCAAGAAGAGGCGGCCACGACG
GCTTTTATATGCTACCCCGGCAGCCAGGGGCAGCGCCGGAGGGGACCCAT
CGCATCGGTGGCGGAGAGTTCTACGTCCGCCACCAGCAGCACGGGGCCAC
GCAGGAGGGGGTCCACGGTGGCGTGTATATACCCCGCCAGCCGCAAGGGG
CCACACCGGAGGGGGTCCGTGGCGGTGGCCGCAGGGCCGGAGGCGTGTGT
ATCAGCCCGGAACGAGAAGGACGGGCCTCGCCGGTCGGGAGGCGGGGCGA
TGGCCACCGCGGCGGCGGCGACGGTGCCGGTGCCGGTGTTGGCGGGGTCA
GGGACGACTACGTGATGGTGTCGCCGGATCGCCCGCCCCCGGTTCCTCAG
CCTCATTACGGTCCATACAGCAGCCGATGA
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