mRNA_Ecto-sp13_S_contig13807.2983.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13807.2983.1
Unique NamemRNA_Ecto-sp13_S_contig13807.2983.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13807.2983.1 vs. uniprot
Match: D8LB78_ECTSI (Centrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB78_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.060e-73
Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 MQPRSARTYVRVGNLQCAARRPCANFVPRRVLFLIEIEWSLVDPVGSISLGNLKKVANEFGHTISDAELMEMISTANYVEGLADEDEQLSNEVTFPDFYNLMTKGRSAASTAEASPKTPGGG 366
            MQPR ART+VRVGNLQC ARRPCANFVPRRVL LIEIEWSL+DPVGSISLGNLKKVANEFGHTISDAELMEMISTANYVEGLAD DEQLSNEV+FPDFYNLMTKGRS+AS AEASPKTPGGG
Sbjct:    1 MQPRPARTHVRVGNLQCVARRPCANFVPRRVLSLIEIEWSLLDPVGSISLGNLKKVANEFGHTISDAELMEMISTANYVEGLADADEQLSNEVSFPDFYNLMTKGRSSASAAEASPKTPGGG 122
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BLAST of mRNA_Ecto-sp13_S_contig13807.2983.1 vs. uniprot
Match: A0A023B8U4_GRENI (Centrin, caltractin n=2 Tax=Gregarina niphandrodes TaxID=110365 RepID=A0A023B8U4_GRENI)

HSP 1 Score: 51.2 bits (121), Expect = 1.840e-5
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:  127 DPVGSISLGNLKKVANEFGHTISDAELMEMISTANYVEGLADEDEQLSNEVTFPDFYNLMTK 312
            D  GSIS  NLK+VA E G T++D EL EMI  A         D     E++F DFY +MTK
Sbjct:  104 DRTGSISFKNLKRVAQELGETMTDEELKEMIERA---------DSNGDGEISFEDFYAIMTK 156
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BLAST of mRNA_Ecto-sp13_S_contig13807.2983.1 vs. uniprot
Match: A0A4D9DEJ2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEJ2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.820e-5
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:  136 GSISLGNLKKVANEFGHTISDAELMEMISTANYVEGLADEDEQLSNEVTFPDFYNLMTK 312
            GSIS  +LK+VA E G  +SDAEL EMI  A+     AD+D     EV+F DFY +MT+
Sbjct:  166 GSISFKDLKRVAKELGENMSDAELKEMIQRAD-----ADQD----GEVSFEDFYTIMTR 215
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BLAST of mRNA_Ecto-sp13_S_contig13807.2983.1 vs. uniprot
Match: A0A086PT87_TOXGO (Putative centrin n=1 Tax=Toxoplasma gondii MAS TaxID=943118 RepID=A0A086PT87_TOXGO)

HSP 1 Score: 48.9 bits (115), Expect = 5.730e-5
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:  127 DPVGSISLGNLKKVANEFGHTISDAELMEMISTANYVEGLADEDEQLSNEVTFPDFYNLMTK 312
            D  G+I+L NLK+VA E G T+S+ EL EM+  A         D     E++F DFY +MTK
Sbjct:   53 DRTGTITLKNLKRVAKELGETMSEDELREMLERA---------DSNGDGEISFEDFYAIMTK 105
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BLAST of mRNA_Ecto-sp13_S_contig13807.2983.1 vs. uniprot
Match: A0A086M5N1_TOXGO (EF hand protein (Fragment) n=3 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A086M5N1_TOXGO)

HSP 1 Score: 48.9 bits (115), Expect = 8.790e-5
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:  127 DPVGSISLGNLKKVANEFGHTISDAELMEMISTANYVEGLADEDEQLSNEVTFPDFYNLMTK 312
            D  G+I+L NLK+VA E G T+S+ EL EM+  A         D     E++F DFY +MTK
Sbjct:   76 DRTGTITLKNLKRVAKELGETMSEDELREMLERA---------DSNGDGEISFEDFYAIMTK 128
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13807.2983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LB78_ECTSI1.060e-7392.62Centrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A023B8U4_GRENI1.840e-546.77Centrin, caltractin n=2 Tax=Gregarina niphandrodes... [more]
A0A4D9DEJ2_9STRA4.820e-550.85Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A086PT87_TOXGO5.730e-543.55Putative centrin n=1 Tax=Toxoplasma gondii MAS Tax... [more]
A0A086M5N1_TOXGO8.790e-543.55EF hand protein (Fragment) n=3 Tax=Toxoplasma gond... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13807contigEcto-sp13_S_contig13807:3520..4602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size366
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-27_004890.1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.7544653-CDS-Ecto-sp13_S_contig13807:3519..37151681462736.7544653-CDS-Ecto-sp13_S_contig13807:3519..3715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13807 3520..3715 +
1681462736.767903-CDS-Ecto-sp13_S_contig13807:4049..41291681462736.767903-CDS-Ecto-sp13_S_contig13807:4049..4129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13807 4050..4129 +
1681462736.7769315-CDS-Ecto-sp13_S_contig13807:4512..46021681462736.7769315-CDS-Ecto-sp13_S_contig13807:4512..4602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13807 4513..4602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13807.2983.1prot_Ecto-sp13_S_contig13807.2983.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13807 3520..4602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13807.2983.1

>prot_Ecto-sp13_S_contig13807.2983.1 ID=prot_Ecto-sp13_S_contig13807.2983.1|Name=mRNA_Ecto-sp13_S_contig13807.2983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MQPRSARTYVRVGNLQCAARRPCANFVPRRVLFLIEIEWSLVDPVGSISL
GNLKKVANEFGHTISDAELMEMISTANYVEGLADEDEQLSNEVTFPDFYN
LMTKGRSAASTAEASPKTPGGG
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mRNA from alignment at Ecto-sp13_S_contig13807:3520..4602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13807.2983.1 ID=mRNA_Ecto-sp13_S_contig13807.2983.1|Name=mRNA_Ecto-sp13_S_contig13807.2983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13807:3520..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACCAAGGTCCGCACGCACGTACGTACGTGTGGGTAACCTACAATG
TGCCGCGCGGAGACCATGCGCAAATTTTGTGCCGCGACGGGTTCTATTTC
TCATCGAGATTGAATGGTCGTTGGTTGATCCGGTAGGGAGTATTAGCCTG
GGGAATCTCAAGAAGGTGGCGAACGAGTTCGGACATACGATCAGCGGTGA
GAGGAAGGAGAGAGGGGAGAAGTGAATGTACATATAGAGAACGGCGAAGA
GGTACGACGAGTGATGATATTTTGGCGGCATCCCCCCCTCCCATCGTTGA
TGGAACACACTCACACGAAGAAACGGACGAGAGGTGTGGGTGTCATGCGG
TGCCATTTCATGAACTTTCGCGTCTGTATTCTCTCACCCTCCCTTCCTTG
TGTTTTCATATTAGAAGCCCTTCATATGCAATCTGCCGACACACGCTGCT
GCTGTCGTTGCACACCTGACTGCAAAATCTTGTTCACTACGCCGCCGATG
CGCTTTCGACCTCCTCGCCGCACATGGTAGATGCCGAGCTCATGGAAATG
ATTTCCACCGCAAATTACGTAGAGGGCTTGGCGGACGAAGACGAGCAACT
CTCCAATGAGGTTTGGAAAACGACGCAACGGTCATGTAGTAAGTACGCTT
GTTCACGCACGGGCTGAATGTGCTGCGTGCTTTATCTCAAGGGTACGCAT
GGGGGAAACAGTAACATTGTGTCGGCTATTGTACGTTCGGGTGCATGCAT
GCGTAGGAGAGAGTGGGCACGTTTGATTTCGTTGTGACCACAGTCAGTCT
ACGCCTTCTCCTGGACGCCACCGCCCTATCAGATTGCGAAGCCGATATCC
ATCGTGCACATCCCTTTTCTTGCCCATGTGCTGTGCCCGACATTTTAGGT
TGTTTGCCGACGATGCACCCTCCCGCCCCCTTCTTCACTTCAACTGTGCT
CATCCCCGTGTCTGAAACACTGCCCCCATCGATCAATAATCAGGTAACCT
TCCCCGACTTCTACAACCTCATGACCAAGGGCCGTTCAGCAGCATCAACC
GCCGAGGCCTCGCCCAAAACCCCTGGGGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13807:3520..4602+

>mRNA_Ecto-sp13_S_contig13807.2983.1 ID=mRNA_Ecto-sp13_S_contig13807.2983.1|Name=mRNA_Ecto-sp13_S_contig13807.2983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13807:3520..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACCAAGGTCCGCACGCACGTACGTACGTGTGGGTAACCTACAATG
TGCCGCGCGGAGACCATGCGCAAATTTTGTGCCGCGACGGGTTCTATTTC
TCATCGAGATTGAATGGTCGTTGGTTGATCCGGTAGGGAGTATTAGCCTG
GGGAATCTCAAGAAGGTGGCGAACGAGTTCGGACATACGATCAGCGATGC
CGAGCTCATGGAAATGATTTCCACCGCAAATTACGTAGAGGGCTTGGCGG
ACGAAGACGAGCAACTCTCCAATGAGGTAACCTTCCCCGACTTCTACAAC
CTCATGACCAAGGGCCGTTCAGCAGCATCAACCGCCGAGGCCTCGCCCAA
AACCCCTGGGGGGGGC
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