mRNA_Ecto-sp13_S_contig1380.2980.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1380.2980.1
Unique NamemRNA_Ecto-sp13_S_contig1380.2980.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: A0A6H5JQP9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP9_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 6.230e-51
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:   55 TELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIKKENQSLRQEREAAEASMFDIQQKALRAQEDMA 372
            TELEKEKTRKDGGDS WIERTR TEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVA+K    SLRQEREAAEASMF+IQQKALRAQEDMA
Sbjct:  328 TELEKEKTRKDGGDSAWIERTRRTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAVK----SLRQEREAAEASMFEIQQKALRAQEDMA 429
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: D8LK70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK70_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 3.150e-42
Identity = 79/92 (85.87%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    1 RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIK 276
            +DLL      RAR    QTELEKEKTRKDGGDS WIERTR TEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIK
Sbjct:   40 KDLL---RAFRARLFDVQTELEKEKTRKDGGDSAWIERTRRTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIK 128
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: A0A836C814_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C814_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.670e-33
Identity = 67/92 (72.83%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIK 276
            RDLL      RAR    QTELEKEK +KD G SVWIERTR  EAEL+WAKE ADRLDRVNQGL REN RLK  FKSQE+DR FLIKQLVA+K
Sbjct:   38 RDLL---RAFRARLFDVQTELEKEKQKKDDGASVWIERTRRIEAELEWAKETADRLDRVNQGLGRENARLKGHFKSQEEDRAFLIKQLVAVK 126
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: A0A7S1CCY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCY3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.250e-32
Identity = 68/101 (67.33%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIKKENQSLRQE 303
            RDLL      RAR    QTELEKEK R + G +VWIE+ R  E ELDWAKEMADRLDR NQ L+REN RLK+QFK+QEDDR +LI QLVA KK+NQ LRQE
Sbjct:   32 RDLL---RAFRARLFDVQTELEKEKARAEDGAAVWIEKNRQLEKELDWAKEMADRLDRHNQALTRENGRLKTQFKTQEDDRNYLIHQLVAAKKDNQRLRQE 129
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: A0A482S3B0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3B0_9ARCH)

HSP 1 Score: 117 bits (292), Expect = 1.090e-29
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    1 RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIKKENQSLRQE 303
            RDLL      RAR    QTELEKEK +KD G + WIER+R  EAE++WAKE+ADRL+RVNQ L +EN RLKSQF SQE+DR FLIKQLVA+KK+N  LR E
Sbjct:  139 RDLL---RAFRARLFDVQTELEKEKGKKDDGAAAWIERSRQLEAEVEWAKEVADRLERVNQTLLQENNRLKSQFTSQEEDRNFLIKQLVAVKKDNARLRAE 236
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: A0A2R5G3R2_9STRA (WD repeat protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3R2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.180e-27
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIKKENQSLRQE 303
            RDLL      RAR    Q+ELE EK++ D G S WIE+ R  E  LDWAKEMADRL+RVNQ L +EN RLKSQFK+QEDDR+FLI+QLV +KK+N  LRQE
Sbjct:  129 RDLL---RAFRARLFDIQSELEVEKSKADVGASSWIEKNRQLERGLDWAKEMADRLERVNQSLQKENTRLKSQFKTQEDDREFLIRQLVTVKKDNVQLRQE 226
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: A0A7S2RLZ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLZ3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.770e-27
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIKKENQSLRQEREAAEASMFDIQQK 345
            RDLL      RAR    QTEL++EK +KD   + WI+R +  EAELDWA+EMA RL R+NQ LS EN   K +FK+ E+DR +LIKQLVA+KK+N  L+QE +     + D++ K
Sbjct:   12 RDLL---RAFRARLFDVQTELDREKAKKDESAATWIQRAKQLEAELDWAREMAGRLKRINQQLSTENKGFKEKFKAGEEDRDYLIKQLVAVKKDNAKLQQETDRISRELLDLEDK 123
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: G5AA54_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AA54_PHYSP)

HSP 1 Score: 109 bits (273), Expect = 2.940e-26
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:    1 RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIKKENQSLRQEREAAEASMFDIQQKA 348
            +DLL      RAR    Q ELE EK + D G S WIE+++  E E++W KE+ADRLDR+NQ L+REN RLK+QF +QE+DR+FL+KQLV +KK+N SLR E +A    +  +++ A
Sbjct:   35 KDLL---RAFRARLYSVQEELESEKNKTDDGASAWIEKSKQLETEVEWTKELADRLDRLNQSLTRENQRLKTQFSTQENDREFLVKQLVTVKKDNVSLRTEIDALRQQLDQLKEAA 147
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: D0N953_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N953_PHYIT)

HSP 1 Score: 108 bits (271), Expect = 3.270e-26
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 1 
Query:    1 RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIKKENQSLRQEREAAEASMFDIQQ 342
            +DLL      RAR    Q ELE EK + D G S WIE+++  E E++W KE+ADRLDR+NQ L+REN RLK+QF +QE+DR+FL+KQLV +KK+N SLR E E     +  +++
Sbjct:   35 KDLL---RAFRARLYSVQEELESEKNKTDDGASAWIEKSKQLETEVEWTKELADRLDRLNQSLTRENQRLKTQFSTQENDREFLVKQLVTVKKDNVSLRTELEGLRQQLDQLRE 145
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BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Match: A0A225W820_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W820_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.530e-26
Identity = 58/103 (56.31%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    1 RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAKEMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIKKENQSLRQERE 309
            +DLL      RAR    Q ELE EK + D G S WIE+++  E E++W KE+ADRLDR+NQ L+REN RLK+QF +QE+DR+FL+KQLV +KK+N SLR E E
Sbjct:   35 KDLL---RAFRARLYSVQEELESEKNKTDDGASAWIEKSKQLETEVEWTKELADRLDRLNQSLTRENQRLKTQFSTQENDREFLVKQLVTVKKDNVSLRAELE 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1380.2980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQP9_9PHAE6.230e-5192.45Reverse transcriptase domain-containing protein n=... [more]
D8LK70_ECTSI3.150e-4285.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C814_9STRA4.670e-3372.83Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S1CCY3_9STRA2.250e-3267.33Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A482S3B0_9ARCH1.090e-2965.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2R5G3R2_9STRA5.180e-2763.37WD repeat protein n=1 Tax=Hondaea fermentalgiana T... [more]
A0A7S2RLZ3_9STRA5.770e-2750.43Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
G5AA54_PHYSP2.940e-2650.86Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D0N953_PHYIT3.270e-2650.88Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A225W820_9STRA3.530e-2656.31Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1380contigEcto-sp13_S_contig1380:610..1377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score146.0
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D8LK70
Model size372
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28KWK@1,2QTD7@2759
Cds size372
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.6036053-CDS-Ecto-sp13_S_contig1380:609..8851681462736.6036053-CDS-Ecto-sp13_S_contig1380:609..885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1380 610..885 +
1681462736.6125062-CDS-Ecto-sp13_S_contig1380:1281..13771681462736.6125062-CDS-Ecto-sp13_S_contig1380:1281..1377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1380 1282..1377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1380.2980.1prot_Ecto-sp13_S_contig1380.2980.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1380 610..1377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1380.2980.1

>prot_Ecto-sp13_S_contig1380.2980.1 ID=prot_Ecto-sp13_S_contig1380.2980.1|Name=mRNA_Ecto-sp13_S_contig1380.2980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
RDLLPYSHGTRARFVHPQTELEKEKTRKDGGDSVWIERTRTTEAELDWAK
EMADRLDRVNQGLSRENLRLKSQFKSQEDDRKFLIKQLVAIKKENQSLRQ
EREAAEASMFDIQQKALRAQEDMA
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mRNA from alignment at Ecto-sp13_S_contig1380:610..1377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1380.2980.1 ID=mRNA_Ecto-sp13_S_contig1380.2980.1|Name=mRNA_Ecto-sp13_S_contig1380.2980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1380:610..1377+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGACCTCCTTCCCTATTCGCATGGTACCCGTGCACGATTTGTGCATCC
GCAGACAGAGCTGGAGAAAGAAAAGACCCGCAAGGACGGCGGGGACAGCG
TCTGGATCGAGCGTACGCGGACGACGGAGGCGGAGCTGGACTGGGCGAAG
GAGATGGCGGACCGCCTCGACAGAGTCAACCAGGGGCTCAGCAGGGAGAA
CTTGAGGCTGAAGAGCCAGTTCAAGAGCCAGGAGGACGACCGCAAGTTCC
TCATAAAGCAGCTAGTGGCCATCAAGGTAAGAAAAAACGTACCGCAATGT
TGGTCTCTCACCCCATAAAAAATGTTTAAGAACAACCCTCACCAGCACCT
GTATGCCCCCCCCTCTTCTCGCAATTGAGAAATAACTTCTCCCAACACCA
ATCCCGTTCCTGGCTCCCCTGGGGTCATCACGCACGAGTGATCCAAACGA
TAGTTTCCCAATCTTCACCTTTTGGGAGGCCATACTATATATAATAGGGT
AGCGCACTACCCCCCAAAAAACACACACACACTGAAAGCTCAGGGCAACT
CGCTTCTTTGCCCCCCCCCACCCTTCTTTCCACATACATACACTTTTCCA
CCTTGCACAAAGGCCGGCCCTTTCTCCATTCTCCATCCCCCCCCTTCCCC
ACCCTCGCTTCCCTCCTTCAAGAAAGAAAACCAGTCCCTGCGGCAAGAGA
GGGAGGCGGCGGAAGCTTCCATGTTTGATATTCAGCAAAAGGCGCTTCGC
GCCCAGGAGGACATGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1380:610..1377+

>mRNA_Ecto-sp13_S_contig1380.2980.1 ID=mRNA_Ecto-sp13_S_contig1380.2980.1|Name=mRNA_Ecto-sp13_S_contig1380.2980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1380:610..1377+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGACCTCCTTCCCTATTCGCATGGTACCCGTGCACGATTTGTGCATCC
GCAGACAGAGCTGGAGAAAGAAAAGACCCGCAAGGACGGCGGGGACAGCG
TCTGGATCGAGCGTACGCGGACGACGGAGGCGGAGCTGGACTGGGCGAAG
GAGATGGCGGACCGCCTCGACAGAGTCAACCAGGGGCTCAGCAGGGAGAA
CTTGAGGCTGAAGAGCCAGTTCAAGAGCCAGGAGGACGACCGCAAGTTCC
TCATAAAGCAGCTAGTGGCCATCAAGAAAGAAAACCAGTCCCTGCGGCAA
GAGAGGGAGGCGGCGGAAGCTTCCATGTTTGATATTCAGCAAAAGGCGCT
TCGCGCCCAGGAGGACATGGCC
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