mRNA_Ecto-sp13_S_contig13790.2976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13790.2976.1
Unique NamemRNA_Ecto-sp13_S_contig13790.2976.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13790.2976.1 vs. uniprot
Match: D7FJM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM6_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.310e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 TALQGLGLQWEHRRHALTAERARAYYAGVATG 96
            TALQGLGLQWEHRRHALTAERARAYYAGVATG
Sbjct:  375 TALQGLGLQWEHRRHALTAERARAYYAGVATG 406
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13790.2976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJM6_ECTSI3.310e-11100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13790contigEcto-sp13_S_contig13790:3..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score69.3
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog2880.D7FJM6
Model size330
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs28JR9@1,2QS4P@2759
Cds size150
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.3593976-CDS-Ecto-sp13_S_contig13790:2..1521681462736.3593976-CDS-Ecto-sp13_S_contig13790:2..152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13790 3..152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.3689806-UTR-Ecto-sp13_S_contig13790:152..3311681462736.3689806-UTR-Ecto-sp13_S_contig13790:152..331Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13790 153..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13790.2976.1prot_Ecto-sp13_S_contig13790.2976.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13790 3..152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13790.2976.1

>prot_Ecto-sp13_S_contig13790.2976.1 ID=prot_Ecto-sp13_S_contig13790.2976.1|Name=mRNA_Ecto-sp13_S_contig13790.2976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
TALQGLGLQWEHRRHALTAERARAYYAGVATGEAPYLFPLGARNTHVLA*
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mRNA from alignment at Ecto-sp13_S_contig13790:3..331+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13790.2976.1 ID=mRNA_Ecto-sp13_S_contig13790.2976.1|Name=mRNA_Ecto-sp13_S_contig13790.2976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=329bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13790:3..331+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCACTGCAAGGGCTGGGGTTGCAATGGGAACACCGGCGGCATGCGTT
GACAGCCGAGAGGGCTAGAGCGTACTACGCAGGGGTAGCGACCGGTGAGG
CTCCCTACCTCTTCCCGCTTGGTGCCCGAAACACGCACGTCCTGGCGTGA
TCACCGTGGCCTCAATTCGAAGCACCAACTCACGGCACAGCTCAGGAATT
TGCTGCAAACAGCTCAATATTTTTCCTCTTGGTATCGCGACTAGGTTTGA
CCTCTTGAAGGATTCTGACGAAAACACACGTGTTGCAGTTCTTGAGTGGC
CCTACTCTTGGGATTTGACGTGACGGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13790:3..331+

>mRNA_Ecto-sp13_S_contig13790.2976.1 ID=mRNA_Ecto-sp13_S_contig13790.2976.1|Name=mRNA_Ecto-sp13_S_contig13790.2976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13790:3..331+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCACTGCAAGGGCTGGGGTTGCAATGGGAACACCGGCGGCATGCGTT
GACAGCCGAGAGGGCTAGAGCGTACTACGCAGGGGTAGCGACCGGTGAGG
CTCCCTACCTCTTCCCGCTTGGTGCCCGAAACACGCACGTCCTGGCGTGA
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