mRNA_Ecto-sp13_S_contig13789.2973.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: D7G2P0_ECTSI (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P0_ECTSI) HSP 1 Score: 486 bits (1251), Expect = 5.610e-167 Identity = 343/407 (84.28%), Postives = 349/407 (85.75%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSVIKPTDVRIRVRGTTAIVQCNEEVTSRQNAAAXXXXXXXXXXXXTDPTLRSFSPAPSALSSFGSYSKADDGDGGSS-FGDNPKHKDPAAWLAHVISENPYEPGSEKSIVSNPTTPEDRARIKKAVGKHGAASIKKAVAAAFAQSDEETRLANLAKRSKKGGPSLSGGRGGSERKSKVKPRVLNVTNIYRKAGGKWLMVHHHASLPPTGRSGSSRRVAMGIDGMKDGLEGMPRIINLSDQGGGFGVGGGSSKDNRLEEMLXXXXXXXXXXXXXXXGGTGAGRTPSGGMIIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGKGSRWRREELPLTEDLTKKTIQ 1218
WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSVIKPTDVRIRVRGTTAIVQCNEEVTSRQNA XXXXXXXXXXXX RSFS FGD+PKHKDPAAWLAHVISENPYEPGSEKSIVSNPTTPEDRARIKKAVGKHGAASIKKAVAAAFAQSDEETRLANLAKRSKKGG LS SER+SK+KPRVLNVTNIYRKAGGKWLMVHHHASLPPTG+SGSSRRVAMGIDG+KDGLEGMPRIINLS+QGGGF KDNRLEEML XXXXXXXXXXXXGGTGAGRTPSGGMIII XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGKGSRWRREELPLTEDLTKKTIQ
Sbjct: 16 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSVIKPTDVRIRVRGTTAIVQCNEEVTSRQNAXXXXXXXXXXXXXXXXXXXRSFSXXXXXXXXXXXXXXXXXXXXXXXXFGDDPKHKDPAAWLAHVISENPYEPGSEKSIVSNPTTPEDRARIKKAVGKHGAASIKKAVAAAFAQSDEETRLANLAKRSKKGGAFLSXXXXXSERRSKIKPRVLNVTNIYRKAGGKWLMVHHHASLPPTGKSGSSRRVAMGIDGLKDGLEGMPRIINLSEQGGGFXXXXXXXKDNRLEEMLEALXXXXXXXXXXXXGGTGAGRTPSGGMIIIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------EGKGSRWRREELPLTEDLTKKTIQ 414
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: A0A6H5L954_9PHAE (UVR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L954_9PHAE) HSP 1 Score: 480 bits (1235), Expect = 5.550e-162 Identity = 341/413 (82.57%), Postives = 344/413 (83.29%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSVIKPTDVRIRVRGTTAIVQCNEEVTSRQNAAAXXXXXXXXXXXXTDPTLRSFSPAPSALSSFGSYSKADDGDGGSSFGDNPKHKDPAAWLAHVISENPYEPGSEKSIVSNPTTPEDRARIKKAVGKHGAASIKKAVAAAFAQSDEETRLANLAKRSKKGGPSLSGGRGGSERKSKVKPRVLNVTNIYRKAGGKWLMVHHHASLPPTGRSGSSRRVAMGIDGMKD-------GLEGMPRIINLSDQGGGFGVGGGSSKDNRLEEMLXXXXXXXXXXXXXXXGGTGAGRTPSGGMIIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGKGSRWRREELPLTEDLTKKTIQ 1218
WMPSNDVMCIHPGDEPVLGQQAV RSWRSLFRSGDGRFSSSVIK CNEEVTSRQNAAA TDPTLRSFSPAPSALSSFGS SKA D DG SSFGDNPKHKDPAAWLAHVISENPYEPGSEKSIVSNPTTPEDRARIKKAVGKHGAASIKKAVAAAFAQSDEETRLANLAKRSKKGG LSGGRGGSER+SKVKPRVLNVTNIYRKAGGKWLMVHHHASLPP G+SGSSRRVAMGIDG+KD LEGMPRIINLSDQGGGF XXXXXXXXXXXXXXXGGTGAGRTPSGGMIII XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G SRWRREELPLTEDLTKKTIQ
Sbjct: 211 WMPSNDVMCIHPGDEPVLGQQAVDRSWRSLFRSGDGRFSSSVIK----------------CNEEVTSRQNAAAAAAA--------TDPTLRSFSPAPSALSSFGSSSKAADDDGSSSFGDNPKHKDPAAWLAHVISENPYEPGSEKSIVSNPTTPEDRARIKKAVGKHGAASIKKAVAAAFAQSDEETRLANLAKRSKKGGAFLSGGRGGSERRSKVKPRVLNVTNIYRKAGGKWLMVHHHASLPPMGKSGSSRRVAMGIDGLKDVRAGAVVALEGMPRIINLSDQGGGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTGAGRTPSGGMIIIGGGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--SRWRREELPLTEDLTKKTIQ 597
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: A0A836CFM1_9STRA (SnoaL-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM1_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.230e-15 Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSVIKPTDVRIRVRGTTAIVQCNEEVTS 201
W+ S+ V+C+HPG EP++G +AV ++WR +F SGD F SSV++P VR+ VRGT+A V C EEV++
Sbjct: 77 WLASDAVLCVHPGQEPLVGHEAVTKAWRGMFASGDAAFKSSVVQPKGVRVSVRGTSAWVTCTEEVSA 143
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: A0A7S2SU46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU46_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.490e-11 Identity = 30/66 (45.45%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSVIKPTDVRIRVRGTTAIVQCNEEVT 198
W+ S CIHPG EP+LG +++ +W ++ RS D RF +++IKPT+V++ V+G+TA + C EEV+
Sbjct: 92 WLDSPQTCCIHPGQEPLLGHRSIMNTWDAMLRSQDTRFRNNMIKPTNVQLSVKGSTAWISCVEEVS 157
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: A0A7S4MBM1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBM1_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 9.800e-10 Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGR--FSSSVIKPTDVRIRVRGTTAIVQCNEEVTSRQ 207
W+ V+C+HP P++G AV SWR +F +G+G F +V++P+ VR+ +RG+TAI+ C+EEV +R+
Sbjct: 275 WLHDASVLCVHPSHAPLVGASAVLGSWRRMFDTGEGAPAFRRNVVEPSRVRLSMRGSTAILTCDEEVYTRR 345
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: A0A7R9ZCZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZCZ2_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 6.110e-8 Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLF-----RSGD-----------GRFSSSVIKPTDVRIRVRGTTAIVQCNEEVTSRQ 207
W+ +C+HPG P++G AV W+ +F SG G + SV++P+ VR+ VRGTTA+V C+E V R+
Sbjct: 3 WLHDAGALCVHPGHSPLVGASAVLGCWKRMFGRAATNSGSTXXXXXXXXXXGGYRRSVVEPSHVRLSVRGTTAVVTCDESVYVRR 87
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: A0A7S0LVY3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LVY3_9CRYP) HSP 1 Score: 61.2 bits (147), Expect = 1.040e-7 Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSV-IKPTDVRIRVRGTTAIVQCNEEVTSRQN 210
W+ S+ V I PG +P++G + + W++ F D +FSSSV I+P++VRI VRG +A V CNE++ ++++
Sbjct: 41 WLKSSTVQFIFPGGKPLIGYRDIMAMWQNSFHLRD-KFSSSVEIRPSNVRISVRGLSAFVVCNEDMVTQKS 110
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: A0A7S3VB37_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VB37_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.040e-7 Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSVIKPTDVRIRVRGTTAIVQCNEEVTSRQ 207
W+ +CIHP ++G + V S++ +F G+ F + ++P+++R+ V+GTTAIV C+EEV +R+
Sbjct: 196 WLHDASALCIHPSSTTIIGSKNVLSSFKEMFAGGNVAFQKNKMEPSNIRMSVKGTTAIVTCDEEVYTRR 264
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: A0A7S0YXZ8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YXZ8_9CRYP) HSP 1 Score: 61.2 bits (147), Expect = 2.390e-7 Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSVIKPTDVRIRVRGTTAIVQCNEE 192
W + V CIHPG PV+G + V + ++FR+ +++ ++PT VR+ VRGT+A V C EE
Sbjct: 67 WDDCDTVQCIHPGLRPVVGHRQVVDMFDNMFRTKQAAAANTRVRPTKVRVHVRGTSAFVLCTEE 130
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Match: A0A7S1XPG9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPG9_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 4.620e-7 Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query: 1 WMPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSS-VIKPTDVRIRVRGTTAIVQCNEEV 195
W ++DV CIHPG +G +AV R+W +F+ R +I+ DVR+ VRGTTA+V C E +
Sbjct: 106 WEHADDVSCIHPGSPIKVGHKAVVRAWERMFKEDRSRQPEPHIIRAGDVRVFVRGTTAVVTCTENI 171 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13789.2973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13789.2973.1 >prot_Ecto-sp13_S_contig13789.2973.1 ID=prot_Ecto-sp13_S_contig13789.2973.1|Name=mRNA_Ecto-sp13_S_contig13789.2973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=405bp MPSNDVMCIHPGDEPVLGQQAVARSWRSLFRSGDGRFSSSVIKPTDVRIRback to top mRNA from alignment at Ecto-sp13_S_contig13789:1030..4611- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13789.2973.1 ID=mRNA_Ecto-sp13_S_contig13789.2973.1|Name=mRNA_Ecto-sp13_S_contig13789.2973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13789:1030..4611- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13789:1030..4611- >mRNA_Ecto-sp13_S_contig13789.2973.1 ID=mRNA_Ecto-sp13_S_contig13789.2973.1|Name=mRNA_Ecto-sp13_S_contig13789.2973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13789:1030..4611- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |